Classes

Class	Line #	Total Statements	Complexity	Uncovered Elements	TOTAL Coverage	Actions
FileFormatsTest	16	62	9	0	1.0100%	Show methods

Class FileFormatsTest

Class FileFormatsTest	Line # 16	Total Statements 62	Complexity 9	Uncovered Elements 0	TOTAL Coverage 1.0100%
tearDown() : void   tearDown() : void	1818	1.01	1.01	0.00	1.0 1.0100%
setUp() : void   setUp() : void	2424	1.01	1.01	0.00	1.0 1.0100%
testIsIdentifiable() : void   testIsIdentifiable() : void	3030	11.011	1.01	0.00	1.0 1.0100%
testGetReadableFormats() : void   testGetReadableFormats() : void	5555	3.03	1.01	0.00	1.0 1.0100%
testGetWritableFormats() : void   testGetWritableFormats() : void	6363	5.05	1.01	0.00	1.0 1.0100%
testDeregisterFileFormat() : void   testDeregisterFileFormat() : void	7373	15.015	1.01	0.00	1.0 1.0100%
testForName() : void   testForName() : void	9898	7.07	1.01	0.00	1.0 1.0100%
testRegisterFileFormat() : void   testRegisterFileFormat() : void	112112	10.010	1.01	0.00	1.0 1.0100%
testGetFormats() : void   testGetFormats() : void	140140	9.09	1.01	0.00	1.0 1.0100%

 

Contributing tests

Contributing tests

Select all

	Test contribution	Test	Result	Actions
	0.22535211	jalview.io.FileFormatsTest.testDeregisterFileFormatjalview.io.FileFormatsTest.testDeregisterFileFormat	1PASS
	0.16901408	jalview.io.FileFormatsTest.testIsIdentifiablejalview.io.FileFormatsTest.testIsIdentifiable	1PASS
	0.15492958	jalview.io.FileFormatsTest.testRegisterFileFormatjalview.io.FileFormatsTest.testRegisterFileFormat	1PASS
	0.14084508	jalview.io.FileFormatsTest.testGetFormatsjalview.io.FileFormatsTest.testGetFormats	1PASS
	0.112676054	jalview.io.FileFormatsTest.testForNamejalview.io.FileFormatsTest.testForName	1PASS
	0.08450704	jalview.io.FileFormatsTest.testGetWritableFormatsjalview.io.FileFormatsTest.testGetWritableFormats	1PASS
	0.056338027	jalview.io.FileFormatsTest.testGetReadableFormatsjalview.io.FileFormatsTest.testGetReadableFormats	1PASS

 

Source view

1		package jalview.io;
2
3		import static org.testng.Assert.assertEquals;
4		import static org.testng.Assert.assertFalse;
5		import static org.testng.Assert.assertNotEquals;
6		import static org.testng.Assert.assertNull;
7		import static org.testng.Assert.assertSame;
8		import static org.testng.Assert.assertTrue;
9
10		import java.util.Iterator;
11
12		import org.testng.annotations.AfterMethod;
13		import org.testng.annotations.BeforeMethod;
14		import org.testng.annotations.Test;
15
		100% Uncovered Elements: 0 (71) Complexity: 9 Complexity Density: 0.15
16		public class FileFormatsTest
17		{
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
18	7	@AfterMethod(alwaysRun = true)...
19		public void tearDown()
20		{
21	7	FileFormats.getInstance().reset();
22		}
23
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
24	7	@BeforeMethod(alwaysRun = true)...
25		public void setUp()
26		{
27	7	FileFormats.getInstance().reset();
28		}
29
		100% Uncovered Elements: 0 (11) Complexity: 1 Complexity Density: 0.09 1PASS
30	1	@Test(groups = "Functional")...
31		public void testIsIdentifiable()
32		{
33	1	FileFormats formats = FileFormats.getInstance();
34	1	assertTrue(formats.isIdentifiable(formats.forName(FileFormat.Fasta
35		.getName())));
36	1	assertTrue(formats.isIdentifiable(formats.forName(FileFormat.MMCif
37		.getName())));
38	1	assertTrue(formats.isIdentifiable(formats.forName(FileFormat.Jnet
39		.getName())));
40	1	assertFalse(formats.isIdentifiable(formats.forName(FileFormat.Jalview
41		.getName())));
42	1	assertFalse(formats.isIdentifiable(null));
43
44		/*
45		* remove and re-add a format: it is still 'identifiable'
46		*/
47	1	formats.deregisterFileFormat(FileFormat.Fasta.getName());
48	1	assertNull(formats.forName(FileFormat.Fasta.getName()));
49	1	formats.registerFileFormat(FileFormat.Fasta);
50	1	assertSame(FileFormat.Fasta,
51		formats.forName(FileFormat.Fasta.getName()));
52	1	assertTrue(formats.isIdentifiable(FileFormat.Fasta));
53		}
54
		100% Uncovered Elements: 0 (3) Complexity: 1 Complexity Density: 0.33 1PASS
55	1	@Test(groups = "Functional")...
56		public void testGetReadableFormats()
57		{
58	1	String expected = "[Fasta, PFAM, Stockholm, PIR, BLC, AMSA, HTML, RNAML, JSON, PileUp, MSF, Clustal, PHYLIP, GFF or Jalview features, PDB, mmCIF, Jalview]";
59	1	FileFormats formats = FileFormats.getInstance();
60	1	assertEquals(formats.getReadableFormats().toString(), expected);
61		}
62
		100% Uncovered Elements: 0 (5) Complexity: 1 Complexity Density: 0.2 1PASS
63	1	@Test(groups = "Functional")...
64		public void testGetWritableFormats()
65		{
66	1	String expected = "[Fasta, PFAM, Stockholm, PIR, BLC, AMSA, JSON, PileUp, MSF, Clustal, PHYLIP]";
67	1	FileFormats formats = FileFormats.getInstance();
68	1	assertEquals(formats.getWritableFormats(true).toString(), expected);
69	1	expected = "[Fasta, PFAM, Stockholm, PIR, BLC, AMSA, JSON, PileUp, MSF, Clustal, PHYLIP, Jalview]";
70	1	assertEquals(formats.getWritableFormats(false).toString(), expected);
71		}
72
		100% Uncovered Elements: 0 (15) Complexity: 1 Complexity Density: 0.07 1PASS
73	1	@Test(groups = "Functional")...
74		public void testDeregisterFileFormat()
75		{
76	1	String writable = "[Fasta, PFAM, Stockholm, PIR, BLC, AMSA, JSON, PileUp, MSF, Clustal, PHYLIP]";
77	1	String readable = "[Fasta, PFAM, Stockholm, PIR, BLC, AMSA, HTML, RNAML, JSON, PileUp, MSF, Clustal, PHYLIP, GFF or Jalview features, PDB, mmCIF, Jalview]";
78	1	FileFormats formats = FileFormats.getInstance();
79	1	assertEquals(formats.getWritableFormats(true).toString(), writable);
80	1	assertEquals(formats.getReadableFormats().toString(), readable);
81
82	1	formats.deregisterFileFormat(FileFormat.Fasta.getName());
83	1	writable = "[PFAM, Stockholm, PIR, BLC, AMSA, JSON, PileUp, MSF, Clustal, PHYLIP]";
84	1	readable = "[PFAM, Stockholm, PIR, BLC, AMSA, HTML, RNAML, JSON, PileUp, MSF, Clustal, PHYLIP, GFF or Jalview features, PDB, mmCIF, Jalview]";
85	1	assertEquals(formats.getWritableFormats(true).toString(), writable);
86	1	assertEquals(formats.getReadableFormats().toString(), readable);
87
88		/*
89		* re-register the format: it gets added to the end of the list
90		*/
91	1	formats.registerFileFormat(FileFormat.Fasta);
92	1	writable = "[PFAM, Stockholm, PIR, BLC, AMSA, JSON, PileUp, MSF, Clustal, PHYLIP, Fasta]";
93	1	readable = "[PFAM, Stockholm, PIR, BLC, AMSA, HTML, RNAML, JSON, PileUp, MSF, Clustal, PHYLIP, GFF or Jalview features, PDB, mmCIF, Jalview, Fasta]";
94	1	assertEquals(formats.getWritableFormats(true).toString(), writable);
95	1	assertEquals(formats.getReadableFormats().toString(), readable);
96		}
97
		100% Uncovered Elements: 0 (7) Complexity: 1 Complexity Density: 0.14 1PASS
98	1	@Test(groups = "Functional")...
99		public void testForName()
100		{
101	1	FileFormats formats = FileFormats.getInstance();
102	1	for (FileFormatI ff : FileFormat.values())
103		{
104	19	assertSame(ff, formats.forName(ff.getName()));
105	19	assertSame(ff, formats.forName(ff.getName().toUpperCase()));
106	19	assertSame(ff, formats.forName(ff.getName().toLowerCase()));
107		}
108	1	assertNull(formats.forName(null));
109	1	assertNull(formats.forName("rubbish"));
110		}
111
		100% Uncovered Elements: 0 (10) Complexity: 1 Complexity Density: 0.1 1PASS
112	1	@Test(groups = "Functional")...
113		public void testRegisterFileFormat()
114		{
115	1	FileFormats formats = FileFormats.getInstance();
116	1	assertSame(FileFormat.MMCif,
117		formats.forName(FileFormat.MMCif.getName()));
118	1	assertTrue(formats.isIdentifiable(FileFormat.MMCif));
119
120		/*
121		* deregister mmCIF format
122		*/
123	1	formats.deregisterFileFormat(FileFormat.MMCif.getName());
124	1	assertNull(formats.forName(FileFormat.MMCif.getName()));
125
126		/*
127		* re-register mmCIF format
128		* it is reinstated (still 'identifiable')
129		*/
130	1	formats.registerFileFormat(FileFormat.MMCif);
131	1	assertSame(FileFormat.MMCif,
132		formats.forName(FileFormat.MMCif.getName()));
133	1	assertTrue(formats.isIdentifiable(FileFormat.MMCif));
134		// repeating does nothing
135	1	formats.registerFileFormat(FileFormat.MMCif);
136	1	assertSame(FileFormat.MMCif,
137		formats.forName(FileFormat.MMCif.getName()));
138		}
139
		100% Uncovered Elements: 0 (9) Complexity: 1 Complexity Density: 0.11 1PASS
140	1	@Test(groups = "Functional")...
141		public void testGetFormats()
142		{
143		/*
144		* verify the list of file formats registered matches the enum values
145		*/
146	1	FileFormats instance = FileFormats.getInstance();
147	1	Iterator<FileFormatI> formats = instance.getFormats()
148		.iterator();
149	1	FileFormatI[] builtIn = FileFormat.values();
150
151	1	for (FileFormatI ff : builtIn)
152		{
153	19	assertSame(ff, formats.next());
154		}
155	1	assertFalse(formats.hasNext());
156
157		/*
158		* remove the first format, check it is no longer in
159		* the list of formats
160		*/
161	1	String firstFormatName = instance.getFormats().iterator().next()
162		.getName();
163	1	instance.deregisterFileFormat(firstFormatName);
164	1	assertNotEquals(instance.getFormats().iterator().next().getName(),
165		firstFormatName);
166		}
167		}