Classes

Class	Line #	Total Statements	Complexity	Uncovered Elements	TOTAL Coverage	Actions
JalviewAppender	33	5	4	1	0.990%	Show methods

Class JalviewAppender

Class JalviewAppender	Line # 33	Total Statements 5	Complexity 4	Uncovered Elements 1	TOTAL Coverage 0.990%
setTextArea(JTextArea) : void   setTextArea(JTextArea) : void	3939	1.01	1.01	0.00	1.0 1.0100%
run() : void   run() : void	5454	2.02	2.02	1.01	0.75 0.7575%
append(LoggingEvent) : void   append(LoggingEvent) : void	4747	2.02	1.01	0.00	1.0 1.0100%

 

Contributing tests

Contributing tests

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	Test contribution	Test	Result	Actions
	0.7	jalview.io.Jalview2xmlTests.testColourByAnnotScoresjalview.io.Jalview2xmlTests.testColourByAnnotScores	1PASS

 

Source view

1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.gui;
22
23		import javax.swing.JTextArea;
24		import javax.swing.SwingUtilities;
25
26		import org.apache.log4j.WriterAppender;
27		import org.apache.log4j.spi.LoggingEvent;
28
29		/**
30		* From http://textareaappender.zcage.com/ the means to capture the logs, too.
31		* Simple example of creating a Log4j appender that will write to a JTextArea.
32		*/
		90% Uncovered Elements: 1 (10) Complexity: 4 Complexity Density: 0.8
33		public class JalviewAppender extends WriterAppender
34		{
35
36		static private JTextArea jTextArea = null;
37
38		/** Set the target JTextArea for the logging information to appear. */
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
39	11	static public void setTextArea(JTextArea jTextArea)...
40		{
41	11	JalviewAppender.jTextArea = jTextArea;
42		}
43
44		/**
45		* Format and then append the loggingEvent to the stored JTextArea.
46		*/
		100% Uncovered Elements: 0 (2) Complexity: 1 Complexity Density: 0.5
47	2128	public void append(LoggingEvent loggingEvent)...
48		{
49	2128	final String message = this.layout.format(loggingEvent);
50
51		// Append formatted message to textarea using the Swing Thread.
52	2128	SwingUtilities.invokeLater(new Runnable()
53		{
		75% Uncovered Elements: 1 (4) Complexity: 2 Complexity Density: 1
54	2128	public void run()...
55		{
56	2128	if (jTextArea != null)
57		{
58	2128	jTextArea.append(message);
59		}
60		}
61		});
62		}
63		}