Classes

Class	Line #	Total Statements	Complexity	Uncovered Elements	TOTAL Coverage	Actions
ChimeraConnect	34	8	2	3	0.770%	Show methods

Class ChimeraConnect

Class ChimeraConnect	Line # 34	Total Statements 8	Complexity 2	Uncovered Elements 3	TOTAL Coverage 0.770%
setUpJvOptionPane() : void   setUpJvOptionPane() : void	3737	2.02	1.01	0.00	1.0 1.0100%
testLaunchAndExit() : void   testLaunchAndExit() : void	4444	6.06	1.01	3.03	0.5 0.550%

 

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1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.ext.rbvi.chimera;
22
23		import static org.testng.AssertJUnit.assertFalse;
24		import static org.testng.AssertJUnit.assertTrue;
25
26		import jalview.gui.JvOptionPane;
27
28		import org.testng.annotations.BeforeClass;
29		import org.testng.annotations.Test;
30
31		import ext.edu.ucsf.rbvi.strucviz2.ChimeraManager;
32		import ext.edu.ucsf.rbvi.strucviz2.StructureManager;
33
		70% Uncovered Elements: 3 (10) Complexity: 2 Complexity Density: 0.25
34		public class ChimeraConnect
35		{
36
		100% Uncovered Elements: 0 (2) Complexity: 1 Complexity Density: 0.5
37	1	@BeforeClass(alwaysRun = true)...
38		public void setUpJvOptionPane()
39		{
40	1	JvOptionPane.setInteractiveMode(false);
41	1	JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
42		}
43
		50% Uncovered Elements: 3 (6) Complexity: 1 Complexity Density: 0.17
44	1	@Test(groups = { "Functional" })...
45		public void testLaunchAndExit()
46		{
47	1	final StructureManager structureManager = new StructureManager(true);
48	1	ChimeraManager cm = new ChimeraManager(structureManager);
49	1	assertTrue("Couldn't launch chimera",
50		cm.launchChimera(StructureManager.getChimeraPaths()));
51	0	assertTrue(cm.isChimeraLaunched()); // Chimera process is alive
52		// int n=0;
53		// not sure of the point of this is unless the tester is loading models
54		// manually?
55		// while (n++ < 100)
56		// {
57		// try {
58		// Thread.sleep(1000);
59		// } catch (Exception q)
60		// {
61		//
62		// }
63		// Collection<ChimeraModel> cms = cm.getChimeraModels();
64		// for (ChimeraModel cmod :cms) {
65		// System.out.println(cmod.getModelName());
66		// }
67		// }
68	0	cm.exitChimera();
69	0	assertFalse(cm.isChimeraLaunched()); // Chimera process has ended
70		}
71
72		}