Classes

Class	Line #	Total Statements	Complexity	Uncovered Elements	TOTAL Coverage	Actions
Qualifier	29	18	10	18	0.440%	Show methods

Class Qualifier

Class Qualifier	Line # 29	Total Statements 18	Complexity 10	Uncovered Elements 18	TOTAL Coverage 0.440%
getName() : String   getName() : String	4040	1.01	1.01	0.00	1.0 1.0100%
setName(String) : void   setName(String) : void	4949	1.01	1.01	0.00	1.0 1.0100%
getValues() : String[]   getValues() : String[]	5757	1.01	1.01	0.00	1.0 1.0100%
setValues(String[]) : void   setValues(String[]) : void	6666	1.01	1.01	0.00	1.0 1.0100%
addEvidence(String) : void   addEvidence(String) : void	7171	6.06	2.02	8.08	0.0 0.00%
addValues(String) : void   addValues(String) : void	8787	6.06	2.02	8.08	0.0 0.00%
getEvidence() : String[]   getEvidence() : String[]	106106	1.01	1.01	0.00	1.0 1.0100%
setEvidence(String[]) : void   setEvidence(String[]) : void	115115	1.01	1.01	0.00	1.0 1.0100%

 

Contributing tests

Contributing tests

Select all

	Test contribution	Test	Result	Actions
	0.4	jalview.datamodel.xdb.embl.EmblEntryTest.testParseCodingFeaturejalview.datamodel.xdb.embl.EmblEntryTest.testParseCodingFeature	1PASS
	0.4	jalview.datamodel.xdb.embl.EmblFileTest.testGetEmblFilejalview.datamodel.xdb.embl.EmblFileTest.testGetEmblFile	1PASS

 

Source view

1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.datamodel.xdb.embl;
22
23		/**
24		* Data model for a &lt;qualifier&gt; child element of a &lt;feature&gt; read
25		* from an EMBL query reply
26		*
27		* @see embl_mapping.xml
28		*/
		40% Uncovered Elements: 18 (30) Complexity: 10 Complexity Density: 0.56
29		public class Qualifier
30		{
31		String name;
32
33		String[] values;
34
35		String[] evidence;
36
37		/**
38		* @return the name
39		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
40	28	public String getName()...
41		{
42	28	return name;
43		}
44
45		/**
46		* @param name
47		* the name to set
48		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
49	14	public void setName(String name)...
50		{
51	14	this.name = name;
52		}
53
54		/**
55		* @return the values
56		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
57	52	public String[] getValues()...
58		{
59	52	return values;
60		}
61
62		/**
63		* @param values
64		* the values to set
65		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
66	16	public void setValues(String[] values)...
67		{
68	16	this.values = values;
69		}
70
		0% Uncovered Elements: 8 (8) Complexity: 2 Complexity Density: 0.33
71	0	public void addEvidence(String qevidence)...
72		{
73		// TODO - not used? can remove?
74	0	if (evidence == null)
75		{
76	0	evidence = new String[1];
77		}
78		else
79		{
80	0	String[] temp = new String[evidence.length + 1];
81	0	System.arraycopy(evidence, 0, temp, 0, evidence.length);
82	0	evidence = temp;
83		}
84	0	evidence[evidence.length - 1] = qevidence;
85		}
86
		0% Uncovered Elements: 8 (8) Complexity: 2 Complexity Density: 0.33
87	0	public void addValues(String value)...
88		{
89		// TODO - not used? can remove?
90	0	if (values == null)
91		{
92	0	values = new String[1];
93		}
94		else
95		{
96	0	String[] temp = new String[values.length + 1];
97	0	System.arraycopy(values, 0, temp, 0, values.length);
98	0	values = temp;
99		}
100	0	values[values.length - 1] = value;
101		}
102
103		/**
104		* @return the evidence
105		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
106	19	public String[] getEvidence()...
107		{
108	19	return evidence;
109		}
110
111		/**
112		* @param evidence
113		* the evidence to set
114		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
115	2	public void setEvidence(String[] evidence)...
116		{
117	2	this.evidence = evidence;
118		}
119		}