Classes

Class	Line #	Total Statements	Complexity	Uncovered Elements	TOTAL Coverage	Actions
NCNodeTest	17	62	6	0	1.0100%	Show methods

Class NCNodeTest

Class NCNodeTest	Line # 17	Total Statements 62	Complexity 6	Uncovered Elements 0	TOTAL Coverage 1.0100%
testAdd() : void   testAdd() : void	1919	10.010	1.01	0.00	1.0 1.0100%
testAdd_invalidRangeStart() : void   testAdd_invalidRangeStart() : void	3535	5.05	1.01	0.00	1.0 1.0100%
testAdd_invalidRangeEnd() : void   testAdd_invalidRangeEnd() : void	4747	5.05	1.01	0.00	1.0 1.0100%
testGetEntries() : void   testGetEntries() : void	5959	17.017	1.01	0.00	1.0 1.0100%
testContains() : void   testContains() : void	8888	8.08	1.01	0.00	1.0 1.0100%
testIsValid() : void   testIsValid() : void	110110	17.017	1.01	0.00	1.0 1.0100%

 

Contributing tests

Contributing tests

Select all

	Test contribution	Test	Result	Actions
	0.2647059	jalview.datamodel.features.NCNodeTest.testIsValidjalview.datamodel.features.NCNodeTest.testIsValid	1PASS
	0.2647059	jalview.datamodel.features.NCNodeTest.testGetEntriesjalview.datamodel.features.NCNodeTest.testGetEntries	1PASS
	0.16176471	jalview.datamodel.features.NCNodeTest.testAddjalview.datamodel.features.NCNodeTest.testAdd	1PASS
	0.13235295	jalview.datamodel.features.NCNodeTest.testContainsjalview.datamodel.features.NCNodeTest.testContains	1PASS
	0.0882353	jalview.datamodel.features.NCNodeTest.testAdd_invalidRangeStartjalview.datamodel.features.NCNodeTest.testAdd_invalidRangeStart	1PASS
	0.0882353	jalview.datamodel.features.NCNodeTest.testAdd_invalidRangeEndjalview.datamodel.features.NCNodeTest.testAdd_invalidRangeEnd	1PASS

 

Source view

1		package jalview.datamodel.features;
2
3		import static org.testng.Assert.assertEquals;
4		import static org.testng.Assert.assertFalse;
5		import static org.testng.Assert.assertTrue;
6
7		import jalview.datamodel.Range;
8		import jalview.datamodel.SequenceFeature;
9
10		import java.util.ArrayList;
11		import java.util.List;
12
13		import junit.extensions.PA;
14
15		import org.testng.annotations.Test;
16
		100% Uncovered Elements: 0 (68) Complexity: 6 Complexity Density: 0.1
17		public class NCNodeTest
18		{
		100% Uncovered Elements: 0 (10) Complexity: 1 Complexity Density: 0.1 1PASS
19	1	@Test(groups = "Functional")...
20		public void testAdd()
21		{
22	1	Range r1 = new Range(10, 20);
23	1	NCNode<Range> node = new NCNode<Range>(r1);
24	1	assertEquals(node.getBegin(), 10);
25	1	Range r2 = new Range(10, 15);
26	1	node.add(r2);
27
28	1	List<Range> contents = new ArrayList<Range>();
29	1	node.getEntries(contents);
30	1	assertEquals(contents.size(), 2);
31	1	assertTrue(contents.contains(r1));
32	1	assertTrue(contents.contains(r2));
33		}
34
		100% Uncovered Elements: 0 (5) Complexity: 1 Complexity Density: 0.2 1PASS
35	1	@Test(...
36		groups = "Functional",
37		expectedExceptions = { IllegalArgumentException.class })
38		public void testAdd_invalidRangeStart()
39		{
40	1	Range r1 = new Range(10, 20);
41	1	NCNode<Range> node = new NCNode<Range>(r1);
42	1	assertEquals(node.getBegin(), 10);
43	1	Range r2 = new Range(9, 15);
44	1	node.add(r2);
45		}
46
		100% Uncovered Elements: 0 (5) Complexity: 1 Complexity Density: 0.2 1PASS
47	1	@Test(...
48		groups = "Functional",
49		expectedExceptions = { IllegalArgumentException.class })
50		public void testAdd_invalidRangeEnd()
51		{
52	1	Range r1 = new Range(10, 20);
53	1	NCNode<Range> node = new NCNode<Range>(r1);
54	1	assertEquals(node.getBegin(), 10);
55	1	Range r2 = new Range(12, 21);
56	1	node.add(r2);
57		}
58
		100% Uncovered Elements: 0 (17) Complexity: 1 Complexity Density: 0.06 1PASS
59	1	@Test(groups = "Functional")...
60		public void testGetEntries()
61		{
62	1	Range r1 = new Range(10, 20);
63	1	NCNode<Range> node = new NCNode<Range>(r1);
64	1	List<Range> entries = new ArrayList<Range>();
65
66	1	node.getEntries(entries);
67	1	assertEquals(entries.size(), 1);
68	1	assertTrue(entries.contains(r1));
69
70		// clearing the returned list does not affect the NCNode
71	1	entries.clear();
72	1	node.getEntries(entries);
73	1	assertEquals(entries.size(), 1);
74	1	assertTrue(entries.contains(r1));
75
76	1	Range r2 = new Range(15, 18);
77	1	node.add(r2);
78	1	entries.clear();
79	1	node.getEntries(entries);
80	1	assertEquals(entries.size(), 2);
81	1	assertTrue(entries.contains(r1));
82	1	assertTrue(entries.contains(r2));
83		}
84
85		/**
86		* Tests for the contains method (uses entry.equals() test)
87		*/
		100% Uncovered Elements: 0 (8) Complexity: 1 Complexity Density: 0.12 1PASS
88	1	@Test(groups = "Functional")...
89		public void testContains()
90		{
91	1	SequenceFeature sf1 = new SequenceFeature("type", "desc", 1, 10, 2f,
92		"group");
93	1	SequenceFeature sf2 = new SequenceFeature("type", "desc", 1, 10, 2f,
94		"group");
95	1	SequenceFeature sf3 = new SequenceFeature("type", "desc", 1, 10, 2f,
96		"anothergroup");
97	1	NCNode<SequenceFeature> node = new NCNode<SequenceFeature>(sf1);
98
99	1	assertFalse(node.contains(null));
100	1	assertTrue(node.contains(sf1));
101	1	assertTrue(node.contains(sf2)); // sf1.equals(sf2)
102	1	assertFalse(node.contains(sf3)); // !sf1.equals(sf3)
103		}
104
105		/**
106		* Test method that checks for valid structure. Valid means that all
107		* subregions (if any) lie within the root range, and that all subregions have
108		* valid structure.
109		*/
		100% Uncovered Elements: 0 (17) Complexity: 1 Complexity Density: 0.06 1PASS
110	1	@Test(groups = "Functional")...
111		public void testIsValid()
112		{
113	1	Range r1 = new Range(10, 20);
114	1	Range r2 = new Range(14, 15);
115	1	Range r3 = new Range(16, 17);
116	1	NCNode<Range> node = new NCNode<Range>(r1);
117	1	node.add(r2);
118	1	node.add(r3);
119
120		/*
121		* node has root range [10-20] and contains an
122		* NCList of [14-15, 16-17]
123		*/
124	1	assertTrue(node.isValid());
125	1	PA.setValue(r1, "start", 15);
126	1	assertFalse(node.isValid()); // r2 not within r1
127	1	PA.setValue(r1, "start", 10);
128	1	assertTrue(node.isValid());
129	1	PA.setValue(r1, "end", 16);
130	1	assertFalse(node.isValid()); // r3 not within r1
131	1	PA.setValue(r1, "end", 20);
132	1	assertTrue(node.isValid());
133	1	PA.setValue(r3, "start", 12);
134	1	assertFalse(node.isValid()); // r3 should precede r2
135		}
136		}