jalviewX
File MappingType.java
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Classes
| Class | Line # | Actions | ||||
|---|---|---|---|---|---|---|
| MappingType | 27 | 8 | 7 | 0 |
Contributing tests
This file is covered by 16 tests.
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| 1 | /* | |
| 2 | * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) | |
| 3 | * Copyright (C) $$Year-Rel$$ The Jalview Authors | |
| 4 | * | |
| 5 | * This file is part of Jalview. | |
| 6 | * | |
| 7 | * Jalview is free software: you can redistribute it and/or | |
| 8 | * modify it under the terms of the GNU General Public License | |
| 9 | * as published by the Free Software Foundation, either version 3 | |
| 10 | * of the License, or (at your option) any later version. | |
| 11 | * | |
| 12 | * Jalview is distributed in the hope that it will be useful, but | |
| 13 | * WITHOUT ANY WARRANTY; without even the implied warranty | |
| 14 | * of MERCHANTABILITY or FITNESS FOR A PARTICULAR | |
| 15 | * PURPOSE. See the GNU General Public License for more details. | |
| 16 | * | |
| 17 | * You should have received a copy of the GNU General Public License | |
| 18 | * along with Jalview. If not, see <http://www.gnu.org/licenses/>. | |
| 19 | * The Jalview Authors are detailed in the 'AUTHORS' file. | |
| 20 | */ | |
| 21 | package jalview.datamodel; | |
| 22 | ||
| 23 | /** | |
| 24 | * An enumeration of the kinds of mapping (from nucleotide or peptide, to | |
| 25 | * nucleotide or peptide), and the corresponding word lengths | |
| 26 | */ | |
| 27 | public enum MappingType | |
| 28 | { | |
| 29 | NucleotideToPeptide(3, 1) | |
| 30 | { | |
| 31 | 1 |  @Override |
| 32 | public MappingType getInverse() | |
| 33 | { | |
| 34 | 1 | return PeptideToNucleotide; |
| 35 | } | |
| 36 | }, | |
| 37 | PeptideToNucleotide(1, 3) | |
| 38 | { | |
| 39 | 16 | @Override |
| 40 | public MappingType getInverse() | |
| 41 | { | |
| 42 | 16 | return NucleotideToPeptide; |
| 43 | } | |
| 44 | }, | |
| 45 | NucleotideToNucleotide(1, 1) | |
| 46 | { | |
| 47 | 1 | @Override |
| 48 | public MappingType getInverse() | |
| 49 | { | |
| 50 | 1 | return NucleotideToNucleotide; |
| 51 | } | |
| 52 | }, | |
| 53 | PeptideToPeptide(1, 1) | |
| 54 | { | |
| 55 | 1 | @Override |
| 56 | public MappingType getInverse() | |
| 57 | { | |
| 58 | 1 | return PeptideToPeptide; |
| 59 | } | |
| 60 | }; | |
| 61 | ||
| 62 | private int fromRatio; | |
| 63 | ||
| 64 | private int toRatio; | |
| 65 | ||
| 66 | 4 | private MappingType(int fromSize, int toSize) |
| 67 | { | |
| 68 | 4 | fromRatio = fromSize; |
| 69 | 4 | toRatio = toSize; |
| 70 | } | |
| 71 | ||
| 72 | public abstract MappingType getInverse(); | |
| 73 | ||
| 74 | 38 | public int getFromRatio() |
| 75 | { | |
| 76 | 38 | return fromRatio; |
| 77 | } | |
| 78 | ||
| 79 | 38 | public int getToRatio() |
| 80 | { | |
| 81 | 38 | return toRatio; |
| 82 | } | |
| 83 | } |