Classes

Class	Line #	Total Statements	Complexity	Uncovered Elements	TOTAL Coverage	Actions
GeneLociI	8	0	0	0	-1.0 -	Show methods

Class GeneLociI

Class GeneLociI	Line # 8	Total Statements 0	Complexity 0	Uncovered Elements 0	TOTAL Coverage -1.0 -

 

Contributing tests

Source view

1		package jalview.datamodel;
2
3		import jalview.util.MapList;
4
5		/**
6		* An interface to model one or more contiguous regions on one chromosome
7		*/
		- Uncovered Elements: 0 (0) Complexity: 0 Complexity Density: -
8		public interface GeneLociI
9		{
10		/**
11		* Answers the species identifier
12		*
13		* @return
14		*/
15		String getSpeciesId();
16
17		/**
18		* Answers the reference assembly identifier
19		*
20		* @return
21		*/
22		String getAssemblyId();
23
24		/**
25		* Answers the chromosome identifier e.g. "2", "Y", "II"
26		*
27		* @return
28		*/
29		String getChromosomeId();
30
31		/**
32		* Answers the mapping from sequence to chromosome loci. For a reverse strand
33		* mapping, the chromosomal ranges will have start > end.
34		*
35		* @return
36		*/
37		MapList getMap();
38		}