Classes

Class	Line #	Total Statements	Complexity	Uncovered Elements	TOTAL Coverage	Actions
SlideSequencesCommand	25	26	11	45	0.00%	Show methods

Class SlideSequencesCommand

Class SlideSequencesCommand	Line # 25	Total Statements 26	Complexity 11	Uncovered Elements 45	TOTAL Coverage 0.00%
SlideSequencesCommand(String,SequenceI[],SequenceI[],int,char)   SlideSequencesCommand(String,SequenceI[],SequenceI[],int,char)	2929	16.016	5.05	24.024	0.0 0.00%
getGapsInsertedBegin() : boolean   getGapsInsertedBegin() : boolean	6565	1.01	1.01	1.01	0.0 0.00%
appendSlideCommand(SlideSequencesCommand) : boolean   appendSlideCommand(SlideSequencesCommand) : boolean	7070	9.09	5.05	17.017	0.0 0.00%

 

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1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.commands;
22
23		import jalview.datamodel.SequenceI;
24
		0% Uncovered Elements: 45 (45) Complexity: 11 Complexity Density: 0.42
25		public class SlideSequencesCommand extends EditCommand
26		{
27		boolean gapsInsertedBegin = false;
28
		0% Uncovered Elements: 24 (24) Complexity: 5 Complexity Density: 0.31
29	0	public SlideSequencesCommand(String description, SequenceI[] seqsLeft,...
30		SequenceI[] seqsRight, int slideSize, char gapChar)
31		{
32	0	this.description = description;
33
34	0	int lSize = seqsLeft.length;
35	0	gapsInsertedBegin = false;
36	0	int i, j;
37	0	for (i = 0; i < lSize; i++)
38		{
39	0	for (j = 0; j < slideSize; j++)
40		{
41	0	if (!jalview.util.Comparison.isGap(seqsLeft[i].getCharAt(j)))
42		{
43	0	gapsInsertedBegin = true;
44	0	break;
45		}
46		}
47		}
48
49	0	Edit e = null;
50
51	0	if (!gapsInsertedBegin)
52		{
53	0	e = new Edit(Action.DELETE_GAP, seqsLeft, 0, slideSize, gapChar);
54	0	setEdit(e);
55		}
56		else
57		{
58	0	e = new Edit(Action.INSERT_GAP, seqsRight, 0, slideSize, gapChar);
59	0	setEdit(e);
60		}
61
62	0	performEdit(e, null);
63		}
64
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
65	0	public boolean getGapsInsertedBegin()...
66		{
67	0	return gapsInsertedBegin;
68		}
69
		0% Uncovered Elements: 17 (17) Complexity: 5 Complexity Density: 0.56
70	0	public boolean appendSlideCommand(SlideSequencesCommand command)...
71		{
72	0	boolean same = false;
73
74	0	if (command.getEdit(0).seqs.length == getEdit(0).seqs.length)
75		{
76	0	same = true;
77	0	for (int i = 0; i < command.getEdit(0).seqs.length; i++)
78		{
79	0	if (getEdit(0).seqs[i] != command.getEdit(0).seqs[i])
80		{
81	0	same = false;
82		}
83		}
84		}
85
86	0	if (same)
87		{
88	0	command.addEdit(getEdit(0));
89		}
90
91	0	return same;
92		}
93		}