Classes

Class	Line #	Total Statements	Complexity	Uncovered Elements	TOTAL Coverage	Actions
AlignmentViewPanel	32	0	0	0	-1.0 -	Show methods

Class AlignmentViewPanel

Class AlignmentViewPanel	Line # 32	Total Statements 0	Complexity 0	Uncovered Elements 0	TOTAL Coverage -1.0 -

 

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1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.api;
22
23		import jalview.datamodel.AlignmentI;
24		import jalview.structure.StructureSelectionManager;
25
26		/**
27		* abstract interface implemented by alignment panels holding an alignment view
28		*
29		* @author JimP
30		*
31		*/
		- Uncovered Elements: 0 (0) Complexity: 0 Complexity Density: -
32		public interface AlignmentViewPanel extends OOMHandlerI
33		{
34
35		AlignViewportI getAlignViewport();
36
37		AlignmentI getAlignment();
38
39		StructureSelectionManager getStructureSelectionManager();
40
41		/**
42		* repaint the alignment view after a datamodel update.
43		*
44		* @param updateOverview
45		* - if true, the overview panel will also be updated and repainted
46		* @param updateStructures
47		* - if true then any linked structure views will also be updated
48		*/
49		void paintAlignment(boolean updateOverview, boolean updateStructures);
50
51		/**
52		* automatically adjust annotation panel height for new annotation whilst
53		* ensuring the alignment is still visible.
54		*/
55		void adjustAnnotationHeight();
56
57		FeatureRenderer getFeatureRenderer();
58
59		FeatureRenderer cloneFeatureRenderer();
60
61		/**
62		*
63		* @return displayed name for the view
64		*/
65		String getViewName();
66		}