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  1. Project Clover database Wed Oct 31 2018 15:13:58 GMT
  2. Package jalview.api

File AlignmentRowsCollectionI.java

 

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Classes

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AlignmentRowsCollectionI 25 0 0 0
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1    /*
2    * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3    * Copyright (C) $$Year-Rel$$ The Jalview Authors
4    *
5    * This file is part of Jalview.
6    *
7    * Jalview is free software: you can redistribute it and/or
8    * modify it under the terms of the GNU General Public License
9    * as published by the Free Software Foundation, either version 3
10    * of the License, or (at your option) any later version.
11    *
12    * Jalview is distributed in the hope that it will be useful, but
13    * WITHOUT ANY WARRANTY; without even the implied warranty
14    * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15    * PURPOSE. See the GNU General Public License for more details.
16    *
17    * You should have received a copy of the GNU General Public License
18    * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19    * The Jalview Authors are detailed in the 'AUTHORS' file.
20    */
21    package jalview.api;
22   
23    import jalview.datamodel.SequenceI;
24   
 
25    public interface AlignmentRowsCollectionI extends Iterable<Integer>
26    {
27    /**
28    * Answers if the sequence at the given position is hidden.
29    *
30    * @param r
31    * the row index to check
32    * @return true if the sequence at r is hidden
33    */
34    public boolean isHidden(int r);
35   
36    /**
37    * Answers if any row in this collection is hidden
38    *
39    * @return true if there is at least 1 hidden row
40    */
41    public boolean hasHidden();
42   
43    /**
44    * Answers the sequence at the given position in the alignment
45    *
46    * @param r
47    * the row index to locate
48    * @return the sequence
49    */
50    public SequenceI getSequence(int r);
51    }