Classes

Class	Line #	Total Statements	Complexity	Uncovered Elements	TOTAL Coverage	Actions
JpredServiceLocator	25	39	23	65	0.00%	Show methods

Class JpredServiceLocator

Class JpredServiceLocator	Line # 25	Total Statements 39	Complexity 23	Uncovered Elements 65	TOTAL Coverage 0.00%
JpredServiceLocator()   JpredServiceLocator()	2929	0.00	1.01	0.00	-1.0 -1.0 -
JpredServiceLocator(org.apache.axis.EngineConfiguration)   JpredServiceLocator(org.apache.axis.EngineConfiguration)	3333	1.01	1.01	1.01	0.0 0.00%
getjpredAddress() : java.lang.String   getjpredAddress() : java.lang.String	4141	1.01	1.01	1.01	0.0 0.00%
getjpredWSDDServiceName() : java.lang.String   getjpredWSDDServiceName() : java.lang.String	4949	1.01	1.01	1.01	0.0 0.00%
setjpredWSDDServiceName(java.lang.String) : void   setjpredWSDDServiceName(java.lang.String) : void	5454	1.01	1.01	1.01	0.0 0.00%
getjpred() : ext.vamsas.Jpred   getjpred() : ext.vamsas.Jpred	5959	5.05	2.02	5.05	0.0 0.00%
getjpred(java.net.URL) : ext.vamsas.Jpred   getjpred(java.net.URL) : ext.vamsas.Jpred	7272	5.05	2.02	5.05	0.0 0.00%
setjpredEndpointAddress(java.lang.String) : void   setjpredEndpointAddress(java.lang.String) : void	8787	1.01	1.01	1.01	0.0 0.00%
getPort(Class) : java.rmi.Remote   getPort(Class) : java.rmi.Remote	9696	7.07	4.04	11.011	0.0 0.00%
getPort(javax.xml.namespace.QName,Class) : java.rmi.Remote   getPort(javax.xml.namespace.QName,Class) : java.rmi.Remote	122122	8.08	3.03	12.012	0.0 0.00%
getServiceName() : javax.xml.namespace.QName   getServiceName() : javax.xml.namespace.QName	143143	1.01	1.01	1.01	0.0 0.00%
getPorts() : java.util.Iterator   getPorts() : java.util.Iterator	150150	4.04	2.02	6.06	0.0 0.00%
setEndpointAddress(java.lang.String,java.lang.String) : void   setEndpointAddress(java.lang.String,java.lang.String) : void	163163	3.03	2.02	5.05	0.0 0.00%
setEndpointAddress(javax.xml.namespace.QName,java.lang.String) : void   setEndpointAddress(javax.xml.namespace.QName,java.lang.String) : void	182182	1.01	1.01	1.01	0.0 0.00%

 

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1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package ext.vamsas;
22
23		import jalview.util.MessageManager;
24
		0% Uncovered Elements: 65 (65) Complexity: 23 Complexity Density: 0.59
25		public class JpredServiceLocator extends org.apache.axis.client.Service
26		implements ext.vamsas.JpredService
27		{
28
		- Uncovered Elements: 0 (0) Complexity: 1 Complexity Density: -
29	0	public JpredServiceLocator()...
30		{
31		}
32
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
33	0	public JpredServiceLocator(org.apache.axis.EngineConfiguration config)...
34		{
35	0	super(config);
36		}
37
38		// Use to get a proxy class for jpred
39		private java.lang.String jpred_address = "http://www.compbio.dundee.ac.uk/JalviewWS/services/jpred";
40
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
41	0	public java.lang.String getjpredAddress()...
42		{
43	0	return jpred_address;
44		}
45
46		// The WSDD service name defaults to the port name.
47		private java.lang.String jpredWSDDServiceName = "jpred";
48
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
49	0	public java.lang.String getjpredWSDDServiceName()...
50		{
51	0	return jpredWSDDServiceName;
52		}
53
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
54	0	public void setjpredWSDDServiceName(java.lang.String name)...
55		{
56	0	jpredWSDDServiceName = name;
57		}
58
		0% Uncovered Elements: 5 (5) Complexity: 2 Complexity Density: 0.4
59	0	public ext.vamsas.Jpred getjpred() throws javax.xml.rpc.ServiceException...
60		{
61	0	java.net.URL endpoint;
62	0	try
63		{
64	0	endpoint = new java.net.URL(jpred_address);
65		} catch (java.net.MalformedURLException e)
66		{
67	0	throw new javax.xml.rpc.ServiceException(e);
68		}
69	0	return getjpred(endpoint);
70		}
71
		0% Uncovered Elements: 5 (5) Complexity: 2 Complexity Density: 0.4
72	0	public ext.vamsas.Jpred getjpred(java.net.URL portAddress)...
73		throws javax.xml.rpc.ServiceException
74		{
75	0	try
76		{
77	0	ext.vamsas.JpredSoapBindingStub _stub = new ext.vamsas.JpredSoapBindingStub(
78		portAddress, this);
79	0	_stub.setPortName(getjpredWSDDServiceName());
80	0	return _stub;
81		} catch (org.apache.axis.AxisFault e)
82		{
83	0	return null;
84		}
85		}
86
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
87	0	public void setjpredEndpointAddress(java.lang.String address)...
88		{
89	0	jpred_address = address;
90		}
91
92		/**
93		* For the given interface, get the stub implementation. If this service has
94		* no port for the given interface, then ServiceException is thrown.
95		*/
		0% Uncovered Elements: 11 (11) Complexity: 4 Complexity Density: 0.57
96	0	public java.rmi.Remote getPort(Class serviceEndpointInterface)...
97		throws javax.xml.rpc.ServiceException
98		{
99	0	try
100		{
101	0	if (ext.vamsas.Jpred.class.isAssignableFrom(serviceEndpointInterface))
102		{
103	0	ext.vamsas.JpredSoapBindingStub _stub = new ext.vamsas.JpredSoapBindingStub(
104		new java.net.URL(jpred_address), this);
105	0	_stub.setPortName(getjpredWSDDServiceName());
106	0	return _stub;
107		}
108		} catch (java.lang.Throwable t)
109		{
110	0	throw new javax.xml.rpc.ServiceException(t);
111		}
112	0	throw new javax.xml.rpc.ServiceException(MessageManager.formatMessage(
113		"exception.no_stub_implementation_for_interface",
114	0	new String[] { (serviceEndpointInterface == null ? "null"
115		: serviceEndpointInterface.getName()) }));
116		}
117
118		/**
119		* For the given interface, get the stub implementation. If this service has
120		* no port for the given interface, then ServiceException is thrown.
121		*/
		0% Uncovered Elements: 12 (12) Complexity: 3 Complexity Density: 0.38
122	0	public java.rmi.Remote getPort(javax.xml.namespace.QName portName,...
123		Class serviceEndpointInterface)
124		throws javax.xml.rpc.ServiceException
125		{
126	0	if (portName == null)
127		{
128	0	return getPort(serviceEndpointInterface);
129		}
130	0	java.lang.String inputPortName = portName.getLocalPart();
131	0	if ("jpred".equals(inputPortName))
132		{
133	0	return getjpred();
134		}
135		else
136		{
137	0	java.rmi.Remote _stub = getPort(serviceEndpointInterface);
138	0	((org.apache.axis.client.Stub) _stub).setPortName(portName);
139	0	return _stub;
140		}
141		}
142
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
143	0	public javax.xml.namespace.QName getServiceName()...
144		{
145	0	return new javax.xml.namespace.QName("vamsas", "jpredService");
146		}
147
148		private java.util.HashSet ports = null;
149
		0% Uncovered Elements: 6 (6) Complexity: 2 Complexity Density: 0.5
150	0	public java.util.Iterator getPorts()...
151		{
152	0	if (ports == null)
153		{
154	0	ports = new java.util.HashSet();
155	0	ports.add(new javax.xml.namespace.QName("vamsas", "jpred"));
156		}
157	0	return ports.iterator();
158		}
159
160		/**
161		* Set the endpoint address for the specified port name.
162		*/
		0% Uncovered Elements: 5 (5) Complexity: 2 Complexity Density: 0.67
163	0	public void setEndpointAddress(java.lang.String portName,...
164		java.lang.String address) throws javax.xml.rpc.ServiceException
165		{
166	0	if ("jpred".equals(portName))
167		{
168	0	setjpredEndpointAddress(address);
169		}
170		else
171		{ // Unknown Port Name
172	0	throw new javax.xml.rpc.ServiceException(
173		MessageManager.formatMessage(
174		"exception.cannot_set_endpoint_address_unknown_port",
175		new String[] { portName }));
176		}
177		}
178
179		/**
180		* Set the endpoint address for the specified port name.
181		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
182	0	public void setEndpointAddress(javax.xml.namespace.QName portName,...
183		java.lang.String address) throws javax.xml.rpc.ServiceException
184		{
185	0	setEndpointAddress(portName.getLocalPart(), address);
186		}
187
188		}