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  1. Project Clover database Wed Oct 31 2018 15:13:58 GMT
  2. Package ext.vamsas

File JpredSoapBindingStub.java

 

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56% of files have more coverage

Code metrics

36
177
10
1
414
338
33
0.19
17.7
10
3.3

Classes

Class Line # Actions
JpredSoapBindingStub 23 177 33 223
0.00%
 

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1    /*
2    * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3    * Copyright (C) $$Year-Rel$$ The Jalview Authors
4    *
5    * This file is part of Jalview.
6    *
7    * Jalview is free software: you can redistribute it and/or
8    * modify it under the terms of the GNU General Public License
9    * as published by the Free Software Foundation, either version 3
10    * of the License, or (at your option) any later version.
11    *
12    * Jalview is distributed in the hope that it will be useful, but
13    * WITHOUT ANY WARRANTY; without even the implied warranty
14    * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15    * PURPOSE. See the GNU General Public License for more details.
16    *
17    * You should have received a copy of the GNU General Public License
18    * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19    * The Jalview Authors are detailed in the 'AUTHORS' file.
20    */
21    package ext.vamsas;
22   
 
23    public class JpredSoapBindingStub extends org.apache.axis.client.Stub
24    implements ext.vamsas.Jpred
25    {
26    private java.util.Vector cachedSerClasses = new java.util.Vector();
27   
28    private java.util.Vector cachedSerQNames = new java.util.Vector();
29   
30    private java.util.Vector cachedSerFactories = new java.util.Vector();
31   
32    private java.util.Vector cachedDeserFactories = new java.util.Vector();
33   
34    static org.apache.axis.description.OperationDesc[] _operations;
35   
 
36  0 toggle static
37    {
38  0 _operations = new org.apache.axis.description.OperationDesc[4];
39  0 _initOperationDesc1();
40    }
41   
 
42  0 toggle private static void _initOperationDesc1()
43    {
44  0 org.apache.axis.description.OperationDesc oper;
45  0 oper = new org.apache.axis.description.OperationDesc();
46  0 oper.setName("predict");
47  0 oper.addParameter(new javax.xml.namespace.QName("", "seq"),
48    new javax.xml.namespace.QName("simple.objects.vamsas",
49    "Sequence"), vamsas.objects.simple.Sequence.class,
50    org.apache.axis.description.ParameterDesc.IN, false, false);
51  0 oper.setReturnType(new javax.xml.namespace.QName(
52    "http://www.w3.org/2001/XMLSchema", "string"));
53  0 oper.setReturnClass(java.lang.String.class);
54  0 oper.setReturnQName(new javax.xml.namespace.QName("", "predictReturn"));
55  0 oper.setStyle(org.apache.axis.constants.Style.RPC);
56  0 oper.setUse(org.apache.axis.constants.Use.ENCODED);
57  0 _operations[0] = oper;
58   
59  0 oper = new org.apache.axis.description.OperationDesc();
60  0 oper.setName("predictOnMsa");
61  0 oper.addParameter(new javax.xml.namespace.QName("", "msf"),
62    new javax.xml.namespace.QName("http://simple.objects.vamsas",
63    "Msfalignment"),
64    vamsas.objects.simple.Msfalignment.class,
65    org.apache.axis.description.ParameterDesc.IN, false, false);
66  0 oper.setReturnType(new javax.xml.namespace.QName(
67    "http://www.w3.org/2001/XMLSchema", "string"));
68  0 oper.setReturnClass(java.lang.String.class);
69  0 oper.setReturnQName(new javax.xml.namespace.QName("",
70    "predictOnMsaReturn"));
71  0 oper.setStyle(org.apache.axis.constants.Style.RPC);
72  0 oper.setUse(org.apache.axis.constants.Use.ENCODED);
73  0 _operations[1] = oper;
74   
75  0 oper = new org.apache.axis.description.OperationDesc();
76  0 oper.setName("getpredict");
77  0 oper.addParameter(new javax.xml.namespace.QName("", "job_id"),
78    new javax.xml.namespace.QName(
79    "http://www.w3.org/2001/XMLSchema", "string"),
80    java.lang.String.class,
81    org.apache.axis.description.ParameterDesc.IN, false, false);
82  0 oper.setReturnType(new javax.xml.namespace.QName(
83    "http://simple.objects.vamsas", "Secstructpred"));
84  0 oper.setReturnClass(vamsas.objects.simple.Secstructpred.class);
85  0 oper.setReturnQName(new javax.xml.namespace.QName("",
86    "getpredictReturn"));
87  0 oper.setStyle(org.apache.axis.constants.Style.RPC);
88  0 oper.setUse(org.apache.axis.constants.Use.ENCODED);
89  0 _operations[2] = oper;
90   
91  0 oper = new org.apache.axis.description.OperationDesc();
92  0 oper.setName("getresult");
93  0 oper.addParameter(new javax.xml.namespace.QName("", "job_id"),
94    new javax.xml.namespace.QName(
95    "http://www.w3.org/2001/XMLSchema", "string"),
96    java.lang.String.class,
97    org.apache.axis.description.ParameterDesc.IN, false, false);
98  0 oper.setReturnType(new javax.xml.namespace.QName(
99    "http://simple.objects.vamsas", "JpredResult"));
100  0 oper.setReturnClass(vamsas.objects.simple.JpredResult.class);
101  0 oper.setReturnQName(new javax.xml.namespace.QName("", "getresultReturn"));
102  0 oper.setStyle(org.apache.axis.constants.Style.RPC);
103  0 oper.setUse(org.apache.axis.constants.Use.ENCODED);
104  0 _operations[3] = oper;
105   
106    }
107   
 
108  0 toggle public JpredSoapBindingStub() throws org.apache.axis.AxisFault
109    {
110  0 this(null);
111    }
112   
 
113  0 toggle public JpredSoapBindingStub(java.net.URL endpointURL,
114    javax.xml.rpc.Service service) throws org.apache.axis.AxisFault
115    {
116  0 this(service);
117  0 super.cachedEndpoint = endpointURL;
118    }
119   
 
120  0 toggle public JpredSoapBindingStub(javax.xml.rpc.Service service)
121    throws org.apache.axis.AxisFault
122    {
123  0 if (service == null)
124    {
125  0 super.service = new org.apache.axis.client.Service();
126    }
127    else
128    {
129  0 super.service = service;
130    }
131  0 java.lang.Class cls;
132  0 javax.xml.namespace.QName qName;
133  0 java.lang.Class beansf = org.apache.axis.encoding.ser.BeanSerializerFactory.class;
134  0 java.lang.Class beandf = org.apache.axis.encoding.ser.BeanDeserializerFactory.class;
135    /*
136    * java.lang.Class enumsf =
137    * org.apache.axis.encoding.ser.EnumSerializerFactory.class; java.lang.Class
138    * enumdf = org.apache.axis.encoding.ser.EnumDeserializerFactory.class;
139    * java.lang.Class arraysf =
140    * org.apache.axis.encoding.ser.ArraySerializerFactory.class;
141    * java.lang.Class arraydf =
142    * org.apache.axis.encoding.ser.ArrayDeserializerFactory.class;
143    * java.lang.Class simplesf =
144    * org.apache.axis.encoding.ser.SimpleSerializerFactory.class;
145    * java.lang.Class simpledf =
146    * org.apache.axis.encoding.ser.SimpleDeserializerFactory.class;
147    * java.lang.Class simplelistsf =
148    * org.apache.axis.encoding.ser.SimpleListSerializerFactory.class;
149    * java.lang.Class simplelistdf =
150    * org.apache.axis.encoding.ser.SimpleListDeserializerFactory.class;
151    */
152  0 qName = new javax.xml.namespace.QName("http://simple.objects.vamsas",
153    "JpredResult");
154  0 cachedSerQNames.add(qName);
155  0 cls = vamsas.objects.simple.JpredResult.class;
156  0 cachedSerClasses.add(cls);
157  0 cachedSerFactories.add(beansf);
158  0 cachedDeserFactories.add(beandf);
159   
160  0 qName = new javax.xml.namespace.QName("simple.objects.vamsas", "Result");
161  0 cachedSerQNames.add(qName);
162  0 cls = vamsas.objects.simple.Result.class;
163  0 cachedSerClasses.add(cls);
164  0 cachedSerFactories.add(beansf);
165  0 cachedDeserFactories.add(beandf);
166   
167  0 qName = new javax.xml.namespace.QName("http://simple.objects.vamsas",
168    "Secstructpred");
169  0 cachedSerQNames.add(qName);
170  0 cls = vamsas.objects.simple.Secstructpred.class;
171  0 cachedSerClasses.add(cls);
172  0 cachedSerFactories.add(beansf);
173  0 cachedDeserFactories.add(beandf);
174   
175  0 qName = new javax.xml.namespace.QName("http://simple.objects.vamsas",
176    "Msfalignment");
177  0 cachedSerQNames.add(qName);
178  0 cls = vamsas.objects.simple.Msfalignment.class;
179  0 cachedSerClasses.add(cls);
180  0 cachedSerFactories.add(beansf);
181  0 cachedDeserFactories.add(beandf);
182   
183  0 qName = new javax.xml.namespace.QName("simple.objects.vamsas",
184    "Sequence");
185  0 cachedSerQNames.add(qName);
186  0 cls = vamsas.objects.simple.Sequence.class;
187  0 cachedSerClasses.add(cls);
188  0 cachedSerFactories.add(beansf);
189  0 cachedDeserFactories.add(beandf);
190   
191    }
192   
 
193  0 toggle protected org.apache.axis.client.Call createCall()
194    throws java.rmi.RemoteException
195    {
196  0 try
197    {
198  0 org.apache.axis.client.Call _call = (org.apache.axis.client.Call) super.service
199    .createCall();
200  0 if (super.maintainSessionSet)
201    {
202  0 _call.setMaintainSession(super.maintainSession);
203    }
204  0 if (super.cachedUsername != null)
205    {
206  0 _call.setUsername(super.cachedUsername);
207    }
208  0 if (super.cachedPassword != null)
209    {
210  0 _call.setPassword(super.cachedPassword);
211    }
212  0 if (super.cachedEndpoint != null)
213    {
214  0 _call.setTargetEndpointAddress(super.cachedEndpoint);
215    }
216  0 if (super.cachedTimeout != null)
217    {
218  0 _call.setTimeout(super.cachedTimeout);
219    }
220  0 if (super.cachedPortName != null)
221    {
222  0 _call.setPortName(super.cachedPortName);
223    }
224  0 java.util.Enumeration keys = super.cachedProperties.keys();
225  0 while (keys.hasMoreElements())
226    {
227  0 java.lang.String key = (java.lang.String) keys.nextElement();
228  0 _call.setProperty(key, super.cachedProperties.get(key));
229    }
230    // All the type mapping information is registered
231    // when the first call is made.
232    // The type mapping information is actually registered in
233    // the TypeMappingRegistry of the service, which
234    // is the reason why registration is only needed for the first call.
235  0 synchronized (this)
236    {
237  0 if (firstCall())
238    {
239    // must set encoding style before registering serializers
240  0 _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
241  0 _call.setEncodingStyle(org.apache.axis.Constants.URI_SOAP11_ENC);
242  0 for (int i = 0; i < cachedSerFactories.size(); ++i)
243    {
244  0 java.lang.Class cls = (java.lang.Class) cachedSerClasses.get(i);
245  0 javax.xml.namespace.QName qName = (javax.xml.namespace.QName) cachedSerQNames
246    .get(i);
247  0 java.lang.Class sf = (java.lang.Class) cachedSerFactories
248    .get(i);
249  0 java.lang.Class df = (java.lang.Class) cachedDeserFactories
250    .get(i);
251  0 _call.registerTypeMapping(cls, qName, sf, df, false);
252    }
253    }
254    }
255  0 return _call;
256    } catch (java.lang.Throwable _t)
257    {
258  0 throw new org.apache.axis.AxisFault(
259    "Failure trying to get the Call object", _t);
260    }
261    }
262   
 
263  0 toggle public java.lang.String predict(vamsas.objects.simple.Sequence seq)
264    throws java.rmi.RemoteException
265    {
266  0 if (super.cachedEndpoint == null)
267    {
268  0 throw new org.apache.axis.NoEndPointException();
269    }
270  0 org.apache.axis.client.Call _call = createCall();
271  0 _call.setOperation(_operations[0]);
272  0 _call.setUseSOAPAction(true);
273  0 _call.setSOAPActionURI("");
274  0 _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
275  0 _call.setOperationName(new javax.xml.namespace.QName("vamsas",
276    "predict"));
277   
278  0 setRequestHeaders(_call);
279  0 setAttachments(_call);
280  0 java.lang.Object _resp = _call.invoke(new java.lang.Object[] { seq });
281   
282  0 if (_resp instanceof java.rmi.RemoteException)
283    {
284  0 throw (java.rmi.RemoteException) _resp;
285    }
286    else
287    {
288  0 extractAttachments(_call);
289  0 try
290    {
291  0 return (java.lang.String) _resp;
292    } catch (java.lang.Exception _exception)
293    {
294  0 return (java.lang.String) org.apache.axis.utils.JavaUtils.convert(
295    _resp, java.lang.String.class);
296    }
297    }
298    }
299   
 
300  0 toggle public java.lang.String predictOnMsa(
301    vamsas.objects.simple.Msfalignment msf)
302    throws java.rmi.RemoteException
303    {
304  0 if (super.cachedEndpoint == null)
305    {
306  0 throw new org.apache.axis.NoEndPointException();
307    }
308  0 org.apache.axis.client.Call _call = createCall();
309  0 _call.setOperation(_operations[1]);
310  0 _call.setUseSOAPAction(true);
311  0 _call.setSOAPActionURI("");
312  0 _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
313  0 _call.setOperationName(new javax.xml.namespace.QName("vamsas",
314    "predictOnMsa"));
315   
316  0 setRequestHeaders(_call);
317  0 setAttachments(_call);
318  0 java.lang.Object _resp = _call.invoke(new java.lang.Object[] { msf });
319   
320  0 if (_resp instanceof java.rmi.RemoteException)
321    {
322  0 throw (java.rmi.RemoteException) _resp;
323    }
324    else
325    {
326  0 extractAttachments(_call);
327  0 try
328    {
329  0 return (java.lang.String) _resp;
330    } catch (java.lang.Exception _exception)
331    {
332  0 return (java.lang.String) org.apache.axis.utils.JavaUtils.convert(
333    _resp, java.lang.String.class);
334    }
335    }
336    }
337   
 
338  0 toggle public vamsas.objects.simple.Secstructpred getpredict(
339    java.lang.String job_id) throws java.rmi.RemoteException
340    {
341  0 if (super.cachedEndpoint == null)
342    {
343  0 throw new org.apache.axis.NoEndPointException();
344    }
345  0 org.apache.axis.client.Call _call = createCall();
346  0 _call.setOperation(_operations[2]);
347  0 _call.setUseSOAPAction(true);
348  0 _call.setSOAPActionURI("");
349  0 _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
350  0 _call.setOperationName(new javax.xml.namespace.QName("vamsas",
351    "getpredict"));
352   
353  0 setRequestHeaders(_call);
354  0 setAttachments(_call);
355  0 java.lang.Object _resp = _call
356    .invoke(new java.lang.Object[] { job_id });
357   
358  0 if (_resp instanceof java.rmi.RemoteException)
359    {
360  0 throw (java.rmi.RemoteException) _resp;
361    }
362    else
363    {
364  0 extractAttachments(_call);
365  0 try
366    {
367  0 return (vamsas.objects.simple.Secstructpred) _resp;
368    } catch (java.lang.Exception _exception)
369    {
370  0 return (vamsas.objects.simple.Secstructpred) org.apache.axis.utils.JavaUtils
371    .convert(_resp, vamsas.objects.simple.Secstructpred.class);
372    }
373    }
374    }
375   
 
376  0 toggle public vamsas.objects.simple.JpredResult getresult(java.lang.String job_id)
377    throws java.rmi.RemoteException
378    {
379  0 if (super.cachedEndpoint == null)
380    {
381  0 throw new org.apache.axis.NoEndPointException();
382    }
383  0 org.apache.axis.client.Call _call = createCall();
384  0 _call.setOperation(_operations[3]);
385  0 _call.setUseSOAPAction(true);
386  0 _call.setSOAPActionURI("");
387  0 _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
388  0 _call.setOperationName(new javax.xml.namespace.QName("vamsas",
389    "getresult"));
390   
391  0 setRequestHeaders(_call);
392  0 setAttachments(_call);
393  0 java.lang.Object _resp = _call
394    .invoke(new java.lang.Object[] { job_id });
395   
396  0 if (_resp instanceof java.rmi.RemoteException)
397    {
398  0 throw (java.rmi.RemoteException) _resp;
399    }
400    else
401    {
402  0 extractAttachments(_call);
403  0 try
404    {
405  0 return (vamsas.objects.simple.JpredResult) _resp;
406    } catch (java.lang.Exception _exception)
407    {
408  0 return (vamsas.objects.simple.JpredResult) org.apache.axis.utils.JavaUtils
409    .convert(_resp, vamsas.objects.simple.JpredResult.class);
410    }
411    }
412    }
413   
414    }
  • Report generated by OpenClover v 4.2.1 on Wed Oct 31 2018 15:15:54 GMT using coverage data from Wed Oct 31 2018 15:15:47 GMT.
  • Clover free edition.