Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
XfamFetcherTest	30	17	3	0.00%	Show methods

Class XfamFetcherTest

Class XfamFetcherTest	Line # 30	Total Statements 17	Complexity 3	TOTAL Coverage 0.00%
setUpJvOptionPane() : void   setUpJvOptionPane() : void	3333	2.02	1.01	0.0 0.00%
testRfamSeed() : void   testRfamSeed() : void	4040	5.05	1.01	0.0 0.00%
testPfamFullAndSeed() : void   testPfamFullAndSeed() : void	5858	10.010	1.01	0.0 0.00%

 

Contributing tests

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1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.ws.dbsources;
22
23		import jalview.datamodel.AlignmentI;
24		import jalview.gui.JvOptionPane;
25
26		import org.testng.Assert;
27		import org.testng.annotations.BeforeClass;
28		import org.testng.annotations.Test;
29
		0% Uncovered Elements: 20 (20) Complexity: 3 Complexity Density: 0.18
30		public class XfamFetcherTest
31		{
32
		0% Uncovered Elements: 2 (2) Complexity: 1 Complexity Density: 0.5
33	0	@BeforeClass(alwaysRun = true)...
34		public void setUpJvOptionPane()
35		{
36	0	JvOptionPane.setInteractiveMode(false);
37	0	JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
38		}
39
		0% Uncovered Elements: 5 (5) Complexity: 1 Complexity Density: 0.2 4-
40	0	@Test(groups = { "External" })...
41		public void testRfamSeed() throws Exception
42		{
43		// RfamFull rff = new RfamFull();
44	0	RfamSeed rfs = new RfamSeed();
45
46	0	AlignmentI seedrf = rfs.getSequenceRecords(rfs.getTestQuery());
47	0	Assert.assertNotNull(seedrf, "Seed Alignment for " + rfs.getTestQuery()
48		+ " didn't retrieve.");
49	0	Assert.assertTrue(seedrf.getHeight() > 1,
50		"Seed Alignment for " + rfs.getTestQuery()
51		+ " didn't contain more than one sequence.");
52	0	Assert.assertTrue(seedrf.getProperties().size() > 0,
53		"Seed Alignment for " + rfs.getTestQuery()
54		+ " didn't have any properties.");
55
56		}
57
		0% Uncovered Elements: 10 (10) Complexity: 1 Complexity Density: 0.1 4-
58	0	@Test(groups = { "External" })...
59		public void testPfamFullAndSeed() throws Exception
60		{
61	0	Pfam pff = new PfamFull();
62	0	PfamSeed pfseed = new PfamSeed();
63
64	0	AlignmentI fullpf = pff.getSequenceRecords(pff.getTestQuery());
65	0	Assert.assertNotNull(fullpf, "Full Alignment for " + pff.getTestQuery()
66		+ " didn't retrieve.");
67	0	Assert.assertTrue(fullpf.getHeight() > 1,
68		"Full Alignment for " + pff.getTestQuery()
69		+ " didn't have more than one sequence.");
70	0	AlignmentI seedpf = pfseed.getSequenceRecords(pff.getTestQuery());
71	0	Assert.assertNotNull(seedpf, "Seed Alignment for " + pff.getTestQuery()
72		+ " didn't retrieve.");
73	0	Assert.assertTrue(seedpf.getProperties().size() > 0,
74		"Seed Alignment for " + pfseed.getTestQuery()
75		+ " didn't have any properties.");
76
77	0	Assert.assertTrue(seedpf.getHeight() < fullpf.getHeight(),
78		"Expected Full alignment to have more sequences than seed for "
79		+ pff.getTestQuery());
80	0	Assert.assertTrue(fullpf.getProperties().size() > 0,
81		"Full Alignment for " + pff.getTestQuery()
82		+ " didn't have any properties.");
83
84		}
85		}