Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
RfamSeed	29	7	7	0.571428657.1%	Show methods

Class RfamSeed

Class RfamSeed	Line # 29	Total Statements 7	Complexity 7	TOTAL Coverage 0.571428657.1%
RfamSeed()   RfamSeed()	3131	1.01	1.01	1.0 1.0100%
getURLSuffix() : String   getURLSuffix() : String	3636	1.01	1.01	1.0 1.0100%
getDbName() : String   getDbName() : String	4747	1.01	1.01	1.0 1.0100%
getDbSource() : String   getDbSource() : String	5353	1.01	1.01	1.0 1.0100%
getTestQuery() : String   getTestQuery() : String	5959	1.01	1.01	0.0 0.00%
getDbVersion() : String   getDbVersion() : String	6565	1.01	1.01	0.0 0.00%
getTier() : int   getTier() : int	7171	1.01	1.01	0.0 0.00%

 

Contributing tests

Contributing tests

Select all

	Test contribution	Test	Result	Actions
	0.42857143	jalview.ws.SequenceFetcherTest.testNoDuplicatesInFetchDbRefsjalview.ws.SequenceFetcherTest.testNoDuplicatesInFetchDbRefs	1PASS
	0.42857143	jalview.ws.seqfetcher.DbRefFetcherTest.testStandardProtDbsjalview.ws.seqfetcher.DbRefFetcherTest.testStandardProtDbs	1PASS
	0.42857143	jalview.project.Jalview2xmlTests.gatherViewsHerejalview.project.Jalview2xmlTests.gatherViewsHere	1PASS
	0.42857143	jalview.io.CrossRef2xmlTests.openCrossrefsForEnsemblTwicejalview.io.CrossRef2xmlTests.openCrossrefsForEnsemblTwice	1PASS
	0.2857143	jalview.ws.dbsources.RfamSeedTest.testGetURLjalview.ws.dbsources.RfamSeedTest.testGetURL	1PASS

 

Source view

1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.ws.dbsources;
22
23		/**
24		* Flyweight class specifying retrieval of Seed family alignments from RFAM
25		*
26		* @author Lauren Michelle Lui
27		*
28		*/
		57.1% Uncovered Elements: 6 (14) Complexity: 7 Complexity Density: 1
29		public class RfamSeed extends Rfam
30		{
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
31	10	public RfamSeed()...
32		{
33	10	super();
34		}
35
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
36	2	@Override...
37		public String getURLSuffix()
38		{
39	2	return "/alignment/stockholm" + GZIPPED;
40		}
41
42		/*
43		* (non-Javadoc)
44		*
45		* @see jalview.ws.seqfetcher.DbSourceProxy#getDbName()
46		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
47	24	@Override...
48		public String getDbName()
49		{
50	24	return "RFAM (Seed)";
51		}
52
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
53	16	@Override...
54		public String getDbSource()
55		{
56	16	return getDbName(); // so we have unique DbSource string.
57		}
58
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
59	0	@Override...
60		public String getTestQuery()
61		{
62	0	return "RF00014";
63		} // http://rfam.janelia.org/cgi-bin/getdesc?acc=RF00014
64
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
65	0	@Override...
66		public String getDbVersion()
67		{
68	0	return null;
69		}
70
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
71	0	@Override...
72		public int getTier()
73		{
74	0	return 0;
75		}
76		}