| Class | Line # | Actions | |||
|---|---|---|---|---|---|
| StringWrap | 17 | 8 | 8 | 0.87587.5% |
|
Class StringWrap |
Line # 17 |
8 |
8 |
0.87587.5% |
|---|---|---|---|---|
| StringWrap(String) StringWrap(String) | 2121 | 1.01 | 1.01 | 1.0 1.0100% |
| toString() : String toString() : String | 2626 | 1.01 | 1.01 | 1.0 1.0100% |
| charAt(int) : char charAt(int) : char | 3131 | 1.01 | 1.01 | 1.0 1.0100% |
| length() : int length() : int | 3636 | 1.01 | 1.01 | 1.0 1.0100% |
| substring(int,int) : String substring(int,int) : String | 4141 | 1.01 | 1.01 | 1.0 1.0100% |
| unwrap() : Object unwrap() : Object | 4646 | 1.01 | 1.01 | 1.0 1.0100% |
| newStringBufferLike() : BasicStringBufferLike newStringBufferLike() : BasicStringBufferLike | 5151 | 1.01 | 1.01 | 1.0 1.0100% |
| indexOf(char) : int indexOf(char) : int | 5656 | 1.01 | 1.01 | 0.0 0.00% |
|
0.875
|
jalview.io.NewickFileTests.testTreeIOjalview.io.NewickFileTests.testTreeIO | 1PASS | ||
|
0.75
|
jalview.io.NewickFileTests.testTreeIOjalview.io.NewickFileTests.testTreeIO | 1PASS | ||
|
0.75
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverReferenceSeqSettingsjalview.project.Jalview2xmlTests.testStoreAndRecoverReferenceSeqSettings | 1PASS | ||
|
0.75
|
jalview.io.NewickFileTests.testTreeIOjalview.io.NewickFileTests.testTreeIO | 1PASS | ||
|
0.75
|
jalview.project.Jalview2xmlTests.testStoreAndRestoreIDwidthAndAnnotationHeightjalview.project.Jalview2xmlTests.testStoreAndRestoreIDwidthAndAnnotationHeight | 1PASS | ||
|
0.75
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverExpandedviewsjalview.project.Jalview2xmlTests.testStoreAndRecoverExpandedviews | 1PASS | ||
|
0.75
|
jalview.project.Jalview2xmlTests.testSaveAndLoadAnnotationBasedTreejalview.project.Jalview2xmlTests.testSaveAndLoadAnnotationBasedTree | 1PASS | ||
|
0.75
|
jalview.project.Jalview2xmlTests.testSaveAndLoadAnnotationsPropertiesjalview.project.Jalview2xmlTests.testSaveAndLoadAnnotationsProperties | 1PASS | ||
|
0.625
|
jalview.io.StockholmFileTest.rfamFileIOjalview.io.StockholmFileTest.rfamFileIO | 1PASS | ||
|
0.625
|
jalview.io.StockholmFileTest.secondaryStructureForRNASequencejalview.io.StockholmFileTest.secondaryStructureForRNASequence | 1PASS | ||
|
0.625
|
jalview.io.StockholmFileTest.pfamFileDataExtractionjalview.io.StockholmFileTest.pfamFileDataExtraction | 1PASS | ||
|
0.625
|
jalview.analysis.AverageDistanceEngineTest.testUPGMAEnginejalview.analysis.AverageDistanceEngineTest.testUPGMAEngine | 1PASS | ||
|
0.625
|
jalview.analysis.ParsePropertiesTest.testGetScoresFromDescription_wordBoundariesjalview.analysis.ParsePropertiesTest.testGetScoresFromDescription_wordBoundaries | 1PASS | ||
|
0.625
|
jalview.util.DBRefUtilsTest.testParseToDbRef_PDBjalview.util.DBRefUtilsTest.testParseToDbRef_PDB | 1PASS | ||
|
0.625
|
jalview.project.Jalview2xmlTests.testPAEsaveRestorejalview.project.Jalview2xmlTests.testPAEsaveRestore | 1PASS | ||
|
0.625
|
jalview.io.RNAMLfileTest.testRnamlSeqImportjalview.io.RNAMLfileTest.testRnamlSeqImport | 1PASS | ||
|
0.625
|
jalview.project.Jalview2xmlTests.viewRefPdbAnnotationjalview.project.Jalview2xmlTests.viewRefPdbAnnotation | 1PASS | ||
|
0.625
|
jalview.project.Jalview2xmlTests.gatherViewsHerejalview.project.Jalview2xmlTests.gatherViewsHere | 1PASS | ||
|
0.625
|
jalview.io.StockholmFileTest.curlyWUSSsecondaryStructureForRNASequencejalview.io.StockholmFileTest.curlyWUSSsecondaryStructureForRNASequence | 1PASS | ||
|
0.625
|
jalview.io.StockholmFileTest.fullWUSSsecondaryStructureForRNASequencejalview.io.StockholmFileTest.fullWUSSsecondaryStructureForRNASequence | 1PASS | ||
|
0.625
|
jalview.project.Jalview2xmlTests.testCopyViewSettingsjalview.project.Jalview2xmlTests.testCopyViewSettings | 1PASS | ||
|
0.625
|
jalview.io.RNAMLfileTest.testRnamlToStockholmIOjalview.io.RNAMLfileTest.testRnamlToStockholmIO | 1PASS | ||
|
0.625
|
jalview.io.FormatAdapterTest.testRoundTripjalview.io.FormatAdapterTest.testRoundTrip | 1PASS | ||
|
0.625
|
jalview.project.Jalview2xmlTests.noDuplicatePdbMappingsMadejalview.project.Jalview2xmlTests.noDuplicatePdbMappingsMade | 1PASS | ||
|
0.625
|
jalview.io.StockholmFileTest.dbrefOutputjalview.io.StockholmFileTest.dbrefOutput | 1PASS | ||
|
0.625
|
jalview.util.UrlLinkTest.testMakeUrlWithRegexjalview.util.UrlLinkTest.testMakeUrlWithRegex | 1PASS | ||
|
0.625
|
jalview.project.Jalview2xmlTests.testRNAStructureRecoveryjalview.project.Jalview2xmlTests.testRNAStructureRecovery | 1PASS | ||
|
0.625
|
jalview.analysis.ParsePropertiesTest.testGetScoresFromDescription_twoScoresjalview.analysis.ParsePropertiesTest.testGetScoresFromDescription_twoScores | 1PASS | ||
|
0.625
|
jalview.io.StockholmFileTest.descriptionLineOutputjalview.io.StockholmFileTest.descriptionLineOutput | 1PASS | ||
|
0.625
|
jalview.project.Jalview2xmlTests.testAutoShowOverviewForLegacyProjectsjalview.project.Jalview2xmlTests.testAutoShowOverviewForLegacyProjects | 1PASS | ||
|
0.625
|
jalview.datamodel.PAEContactMatrixTest.testSeqAssociatedPAEMatrixjalview.datamodel.PAEContactMatrixTest.testSeqAssociatedPAEMatrix | 1PASS | ||
|
0.625
|
jalview.analysis.ParsePropertiesTest.testGetScoresFromDescriptionjalview.analysis.ParsePropertiesTest.testGetScoresFromDescription | 1PASS | ||
|
0.625
|
jalview.io.StockholmFileTest.stockholmFileRnaSSAlphaCharsjalview.io.StockholmFileTest.stockholmFileRnaSSAlphaChars | 1PASS | ||
|
0.625
|
jalview.io.StockholmFileTest.pfamFileIOjalview.io.StockholmFileTest.pfamFileIO | 1PASS | ||
|
0.5
|
jalview.gui.StructureChooserTest.openStructureFileForSequenceTestjalview.gui.StructureChooserTest.openStructureFileForSequenceTest | 1PASS | ||
|
0.5
|
jalview.ext.jmol.JmolParserTest.testAlignmentLoaderjalview.ext.jmol.JmolParserTest.testAlignmentLoader | 1PASS | ||
|
0.5
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.5
|
jalview.controller.AlignViewControllerTest.testSelectColumnsWithHighlightjalview.controller.AlignViewControllerTest.testSelectColumnsWithHighlight | 1PASS | ||
|
0.5
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.5
|
jalview.io.LayeredDBNParserTest.testParsejalview.io.LayeredDBNParserTest.testParse | 1PASS | ||
|
0.5
|
jalview.ws.dbsources.EBIAlphaFoldTest.testAlphafoldDBRegexjalview.ws.dbsources.EBIAlphaFoldTest.testAlphafoldDBRegex | 1PASS | ||
|
0.5
|
jalview.gui.AssociatePDBFileTest.testAssociatePDBFilejalview.gui.AssociatePDBFileTest.testAssociatePDBFile | 1PASS | ||
|
0.5
|
jalview.ext.ensembl.EnsemblProteinTest.testIsValidReferencejalview.ext.ensembl.EnsemblProteinTest.testIsValidReference | 1PASS | ||
|
0.5
|
jalview.ext.ensembl.EnsemblCdnaTest.testIsValidReferencejalview.ext.ensembl.EnsemblCdnaTest.testIsValidReference | 1PASS | ||
|
0.5
|
jalview.gui.StructureChooserTest.openStructureFileForSequenceTestjalview.gui.StructureChooserTest.openStructureFileForSequenceTest | 1PASS | ||
|
0.5
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.5
|
jalview.analysis.FinderTest.testFindAlljalview.analysis.FinderTest.testFindAll | 1PASS | ||
|
0.5
|
jalview.ext.ensembl.EnsemblCdsTest.testIsValidReferencejalview.ext.ensembl.EnsemblCdsTest.testIsValidReference | 1PASS | ||
|
0.5
|
jalview.ext.jmol.JmolParserTest.testParse_alternativeResiduesjalview.ext.jmol.JmolParserTest.testParse_alternativeResidues | 1PASS | ||
|
0.5
|
jalview.gui.structurechooser.StructureChooserQuerySourceTest.cascadingThreeDBandPDBQuerysjalview.gui.structurechooser.StructureChooserQuerySourceTest.cascadingThreeDBandPDBQuerys | 1PASS | ||
|
0.5
|
jalview.bin.CommandsTest2.do_network_structureOpeningArgsTestjalview.bin.CommandsTest2.do_network_structureOpeningArgsTest | 1PASS | ||
|
0.5
|
mc_view.PDBfileTest.testParse_withJmol_noAnnotationsmc_view.PDBfileTest.testParse_withJmol_noAnnotations | 1PASS | ||
|
0.5
|
jalview.ext.jmol.JmolViewerTest.testSingleSeqViewJMoljalview.ext.jmol.JmolViewerTest.testSingleSeqViewJMol | 1PASS | ||
|
0.5
|
jalview.analysis.FinderTest.testFind_residueNumberjalview.analysis.FinderTest.testFind_residueNumber | 1PASS | ||
|
0.5
|
jalview.analysis.FinderTest.testFind_ignoreHiddenColumnsjalview.analysis.FinderTest.testFind_ignoreHiddenColumns | 1PASS | ||
|
0.5
|
jalview.analysis.FinderTest.testFindNextjalview.analysis.FinderTest.testFindNext | 1PASS | ||
|
0.5
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.5
|
jalview.io.AnnotatedPDBFileInputTest.testJalviewProjectRelocationAnnotationjalview.io.AnnotatedPDBFileInputTest.testJalviewProjectRelocationAnnotation | 1PASS | ||
|
0.5
|
jalview.gui.StructureChooserTest.openStructureFileForSequenceMultiChainTestjalview.gui.StructureChooserTest.openStructureFileForSequenceMultiChainTest | 3FAIL | ||
|
0.5
|
jalview.analysis.FinderTest.testFind_findAlljalview.analysis.FinderTest.testFind_findAll | 1PASS | ||
|
0.5
|
jalview.bin.CommandsTest2.do_network_structureOpeningArgsTestjalview.bin.CommandsTest2.do_network_structureOpeningArgsTest | 1PASS | ||
|
0.5
|
jalview.analysis.FinderTest.testFind_inDescriptionjalview.analysis.FinderTest.testFind_inDescription | 1PASS | ||
|
0.5
|
jalview.analysis.FinderTest.testFind_findNextjalview.analysis.FinderTest.testFind_findNext | 1PASS | ||
|
0.5
|
jalview.ext.jmol.JmolViewerTest.testAddStrToSingleSeqViewJMoljalview.ext.jmol.JmolViewerTest.testAddStrToSingleSeqViewJMol | 1PASS | ||
|
0.5
|
jalview.structure.StructureSelectionManagerTest.testSetMapping_seqFeaturesjalview.structure.StructureSelectionManagerTest.testSetMapping_seqFeatures | 1PASS | ||
|
0.5
|
jalview.analysis.FinderTest.testFindAll_inSelectionjalview.analysis.FinderTest.testFindAll_inSelection | 1PASS | ||
|
0.5
|
jalview.bin.CommandsTest2.do_network_structureOpeningArgsTestjalview.bin.CommandsTest2.do_network_structureOpeningArgsTest | 1PASS | ||
|
0.5
|
jalview.structures.models.AAStructureBindingModelTest.testImportPDBPreservesChainMappingsjalview.structures.models.AAStructureBindingModelTest.testImportPDBPreservesChainMappings | 1PASS | ||
|
0.5
|
mc_view.PDBfileTest.testParse_withJmolAddAlignmentAnnotationsmc_view.PDBfileTest.testParse_withJmolAddAlignmentAnnotations | 1PASS | ||
|
0.5
|
jalview.ext.jmol.JmolParserTest.testParse_missingResiduesjalview.ext.jmol.JmolParserTest.testParse_missingResidues | 1PASS | ||
|
0.5
|
jalview.analysis.FinderTest.testFindNext_inSelectionjalview.analysis.FinderTest.testFindNext_inSelection | 1PASS | ||
|
0.5
|
jalview.gui.StructureChooserTest.openStructureFileForSequenceTestjalview.gui.StructureChooserTest.openStructureFileForSequenceTest | 1PASS | ||
|
0.5
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.5
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverPDBEntryjalview.project.Jalview2xmlTests.testStoreAndRecoverPDBEntry | 1PASS | ||
|
0.5
|
jalview.analysis.FinderTest.testFindAll_sequenceIdsjalview.analysis.FinderTest.testFindAll_sequenceIds | 1PASS | ||
|
0.5
|
jalview.analysis.FinderTest.testFind_regexjalview.analysis.FinderTest.testFind_regex | 1PASS | ||
|
0.5
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.5
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.5
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.5
|
jalview.analysis.FinderTest.testFind_findAllInSelectionWithShortSequencejalview.analysis.FinderTest.testFind_findAllInSelectionWithShortSequence | 1PASS | ||
|
0.5
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.5
|
jalview.analysis.FinderTest.testFind_withHiddenColumnsAndSelectionjalview.analysis.FinderTest.testFind_withHiddenColumnsAndSelection | 1PASS | ||
|
0.5
|
jalview.analysis.FinderTest.testFindAll_caseSensitivejalview.analysis.FinderTest.testFindAll_caseSensitive | 1PASS | ||
|
0.5
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.5
|
jalview.gui.StructureChooserTest.openStructureFileForSequenceTestjalview.gui.StructureChooserTest.openStructureFileForSequenceTest | 1PASS | ||
|
0.5
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.5
|
jalview.ext.jmol.JmolParserTest.testFileParserjalview.ext.jmol.JmolParserTest.testFileParser | 1PASS | ||
|
0.5
|
jalview.analysis.FinderTest.testFind_withHiddenColumnsjalview.analysis.FinderTest.testFind_withHiddenColumns | 1PASS | ||
|
0.5
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.5
|
jalview.analysis.FinderTest.testFind_featuresOnlyjalview.analysis.FinderTest.testFind_featuresOnly | 1PASS | ||
|
0.5
|
jalview.analysis.FinderTest.testFindAll_maximalResultOnlyjalview.analysis.FinderTest.testFindAll_maximalResultOnly | 1PASS | ||
|
0.5
|
jalview.gui.StructureChooserTest.openStructureFileForSequenceTestjalview.gui.StructureChooserTest.openStructureFileForSequenceTest | 1PASS | ||
|
0.5
|
jalview.gui.StructureChooserTest.openStructureFileForSequenceTestjalview.gui.StructureChooserTest.openStructureFileForSequenceTest | 1PASS | ||
|
0.5
|
jalview.gui.StructureChooserTest.openStructureFileForSequenceMultiChainTestjalview.gui.StructureChooserTest.openStructureFileForSequenceMultiChainTest | 3FAIL | ||
|
0.5
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.375
|
jalview.util.UrlLinkTest.testUrlLinkCreationWithRegexjalview.util.UrlLinkTest.testUrlLinkCreationWithRegex | 1PASS |
| 1 | // | ||||||
| 2 | // This software is now distributed according to | ||||||
| 3 | // the Lesser Gnu Public License. Please see | ||||||
| 4 | // http://www.gnu.org/copyleft/lesser.txt for | ||||||
| 5 | // the details. | ||||||
| 6 | // -- Happy Computing! | ||||||
| 7 | // | ||||||
| 8 | package com.stevesoft.pat.wrap; | ||||||
| 9 | |||||||
| 10 | import com.stevesoft.pat.BasicStringBufferLike; | ||||||
| 11 | import com.stevesoft.pat.StringLike; | ||||||
| 12 | |||||||
| 13 | /** | ||||||
| 14 | * A basic wrapper for the String object. Regex does not search String directly | ||||||
| 15 | * any longer, it searches StringLike. | ||||||
| 16 | */ | ||||||
|
|||||||
| 17 | public class StringWrap implements StringLike | ||||||
| 18 | { | ||||||
| 19 | String s; | ||||||
| 20 | |||||||
|
|||||||
| 21 | 12615 | public StringWrap(String s)... |
|||||
| 22 | { | ||||||
| 23 | 12615 | this.s = s; | |||||
| 24 | } | ||||||
| 25 | |||||||
|
|||||||
| 26 | 193 | public String toString()... |
|||||
| 27 | { | ||||||
| 28 | 193 | return s; | |||||
| 29 | } | ||||||
| 30 | |||||||
|
|||||||
| 31 | 1165870 | public char charAt(int i)... |
|||||
| 32 | { | ||||||
| 33 | 1165870 | return s.charAt(i); | |||||
| 34 | } | ||||||
| 35 | |||||||
|
|||||||
| 36 | 1072679 | public int length()... |
|||||
| 37 | { | ||||||
| 38 | 1072679 | return s.length(); | |||||
| 39 | } | ||||||
| 40 | |||||||
|
|||||||
| 41 | 13776 | public String substring(int i1, int i2)... |
|||||
| 42 | { | ||||||
| 43 | 13776 | return s.substring(i1, i2); | |||||
| 44 | } | ||||||
| 45 | |||||||
|
|||||||
| 46 | 23025 | public Object unwrap()... |
|||||
| 47 | { | ||||||
| 48 | 23025 | return s; | |||||
| 49 | } | ||||||
| 50 | |||||||
|
|||||||
| 51 | 3 | public BasicStringBufferLike newStringBufferLike()... |
|||||
| 52 | { | ||||||
| 53 | 3 | return new StringBufferWrap(); | |||||
| 54 | } | ||||||
| 55 | |||||||
|
|||||||
| 56 | 0 | public int indexOf(char c)... |
|||||
| 57 | { | ||||||
| 58 | 0 | return s.indexOf(c); | |||||
| 59 | } | ||||||
| 60 | } |
