|
jalview.datamodel.Sequence.DBModList
jalview.datamodel.Sequence.DBModList
|
1.0100%
|
|
|
com.stevesoft.pat.SubMark
com.stevesoft.pat.SubMark
|
0.880%
|
|
|
jalview.gui.ItemsRenderer
jalview.gui.ItemsRenderer
|
0.777777877.8%
|
|
|
jalview.ws.SequenceFetcher
jalview.ws.SequenceFetcher
|
0.6470588464.7%
|
|
|
com.stevesoft.pat.wrap.StringWrap
com.stevesoft.pat.wrap.StringWrap
|
0.62562.5%
|
|
|
jalview.io.StockholmFile
jalview.io.StockholmFile
|
0.618159261.8%
|
|
|
com.stevesoft.pat.OrMark
com.stevesoft.pat.OrMark
|
0.5555%
|
|
|
com.stevesoft.pat.Skip2
com.stevesoft.pat.Skip2
|
0.518518551.9%
|
|
|
jalview.io.AlignFile
jalview.io.AlignFile
|
0.513513551.4%
|
|
|
com.stevesoft.pat.FastChar
com.stevesoft.pat.FastChar
|
0.550%
|
|
|
jalview.analysis.SecStrConsensus.SimpleBP
jalview.analysis.SecStrConsensus.SimpleBP
|
0.550%
|
|
|
jalview.datamodel.rna.AnnotCharSequence
jalview.datamodel.rna.AnnotCharSequence
|
0.464285746.4%
|
|
|
com.stevesoft.pat.FastMulti
com.stevesoft.pat.FastMulti
|
0.4629629646.3%
|
|
|
jalview.analysis.Rna
jalview.analysis.Rna
|
0.4545%
|
|
|
jalview.datamodel.HiddenCursorPosition
jalview.datamodel.HiddenCursorPosition
|
0.4285714342.9%
|
|
|
jalview.ws.dbsources.EmblSource
jalview.ws.dbsources.EmblSource
|
0.440%
|
|
|
jalview.datamodel.DBRefSource
jalview.datamodel.DBRefSource
|
0.37537.5%
|
|
|
com.stevesoft.pat.Start
com.stevesoft.pat.Start
|
0.3636363736.4%
|
|
|
jalview.datamodel.rna.NucStructure
jalview.datamodel.rna.NucStructure
|
0.361702136.2%
|
|
|
jalview.bin.ApplicationSingletonProvider
jalview.bin.ApplicationSingletonProvider
|
0.3428571534.3%
|
|
|
com.stevesoft.pat.End
com.stevesoft.pat.End
|
0.3103448231%
|
|
|
jalview.datamodel.AlignmentAnnotation
jalview.datamodel.AlignmentAnnotation
|
0.301158330.1%
|
|
|
jalview.io.FileParse
jalview.io.FileParse
|
0.2991689729.9%
|
|
|
com.stevesoft.pat.Range
com.stevesoft.pat.Range
|
0.2954545329.5%
|
|
|
jalview.ws.dbsources.EmblCdsSource
jalview.ws.dbsources.EmblCdsSource
|
0.285714328.6%
|
|
|
com.stevesoft.pat.DotMulti
com.stevesoft.pat.DotMulti
|
0.275362327.5%
|
|
|
com.stevesoft.pat.Bracket
com.stevesoft.pat.Bracket
|
0.27527.5%
|
|
|
jalview.datamodel.Annotation
jalview.datamodel.Annotation
|
0.2714285927.1%
|
|
|
jalview.datamodel.Sequence
jalview.datamodel.Sequence
|
0.271129727.1%
|
|
|
jalview.datamodel.rna.NucStructureI
jalview.datamodel.rna.NucStructureI
|
0.2352941223.5%
|
|
|
jalview.datamodel.SequenceCursor
jalview.datamodel.SequenceCursor
|
0.2333333323.3%
|
|
|
jalview.log.JalviewAppender
jalview.log.JalviewAppender
|
0.2222222222.2%
|
|
|
jalview.util.Comparison
jalview.util.Comparison
|
0.2204724422%
|
|
|
jalview.datamodel.DBRefEntry
jalview.datamodel.DBRefEntry
|
0.2191780821.9%
|
|
|
jalview.io.IdentifyFile
jalview.io.IdentifyFile
|
0.2187521.9%
|
|
|
com.stevesoft.pat.Or
com.stevesoft.pat.Or
|
0.2051282120.5%
|
|
|
jalview.util.Format
jalview.util.Format
|
0.186335418.6%
|
|
|
com.stevesoft.pat.Pattern
com.stevesoft.pat.Pattern
|
0.173611117.4%
|
|
|
com.stevesoft.pat.oneChar
com.stevesoft.pat.oneChar
|
0.1714285817.1%
|
|
|
jalview.util.MessageManager
jalview.util.MessageManager
|
0.1666666716.7%
|
|
|
jalview.ws.jws2.JabaWsServerQuery
jalview.ws.jws2.JabaWsServerQuery
|
0.1458333314.6%
|
|
|
jalview.gui.JvSwingUtils
jalview.gui.JvSwingUtils
|
0.1379310313.8%
|
|
|
com.stevesoft.pat.RegRes
com.stevesoft.pat.RegRes
|
0.1304347813%
|
|
|
jalview.datamodel.features.SequenceFeatures
jalview.datamodel.features.SequenceFeatures
|
0.1210191112.1%
|
|
|
jalview.io.AppletFormatAdapter
jalview.io.AppletFormatAdapter
|
0.1086956510.9%
|
|
|
com.stevesoft.pat.patInt
com.stevesoft.pat.patInt
|
0.110%
|
|
|
jalview.ws.dbsources.Xfam
jalview.ws.dbsources.Xfam
|
0.086956528.7%
|
|
|
jalview.ext.ensembl.EnsemblSequenceFetcher
jalview.ext.ensembl.EnsemblSequenceFetcher
|
0.0833333368.3%
|
|
|
com.stevesoft.pat.Regex
com.stevesoft.pat.Regex
|
0.088%
|
|
|
jalview.bin.Console
jalview.bin.Console
|
0.0707547147.1%
|
|
|
jalview.util.DBRefUtils
jalview.util.DBRefUtils
|
0.068452386.8%
|
|
|
jalview.datamodel.Alignment
jalview.datamodel.Alignment
|
0.066012496.6%
|
|
|
jalview.log.JLogger
jalview.log.JLogger
|
0.065934076.6%
|
|
|
jalview.ws.seqfetcher.ASequenceFetcher
jalview.ws.seqfetcher.ASequenceFetcher
|
0.0577777775.8%
|
|
|
jalview.datamodel.SequenceFeature
jalview.datamodel.SequenceFeature
|
0.057553965.8%
|
|
|
jalview.ws.seqfetcher.DbSourceProxyImpl
jalview.ws.seqfetcher.DbSourceProxyImpl
|
0.0540540555.4%
|
|
|
com.stevesoft.pat.FastBracket
com.stevesoft.pat.FastBracket
|
0.0538922145.4%
|
|
|
jalview.ws.dbsources.Pdb
jalview.ws.dbsources.Pdb
|
0.0408163264.1%
|
|
|
jalview.io.FileFormat
jalview.io.FileFormat
|
0.0402684554%
|
|
|
jalview.ws.jws2.Jws2Discoverer
jalview.ws.jws2.Jws2Discoverer
|
0.0320512843.2%
|
|
|
com.stevesoft.pat.Skip
com.stevesoft.pat.Skip
|
0.0270270282.7%
|
|
|
jalview.datamodel.HiddenColumnsCursor
jalview.datamodel.HiddenColumnsCursor
|
0.0156251.6%
|
|
|
jalview.ws.dbsources.Uniprot
jalview.ws.dbsources.Uniprot
|
0.015325671.5%
|
|
|
jalview.analysis.AlignSeq
jalview.analysis.AlignSeq
|
0.01275510251.3%
|
|
|
jalview.util.Platform
jalview.util.Platform
|
0.0123762381.2%
|
|
|
jalview.gui.AlignFrame
jalview.gui.AlignFrame
|
0.0112711331.1%
|
|
|
jalview.gui.BlogReader
jalview.gui.BlogReader
|
0.0110497241.1%
|
|
|
jalview.datamodel.HiddenSequences
jalview.datamodel.HiddenSequences
|
0.009132420.9%
|
|
|
jalview.ext.ensembl.EnsemblGene
jalview.ext.ensembl.EnsemblGene
|
0.0081632650.8%
|
|
|
jalview.schemes.ResidueProperties
jalview.schemes.ResidueProperties
|
0.00772797550.8%
|
|
|
jalview.util.HttpUtils
jalview.util.HttpUtils
|
0.0050505050.5%
|
|
|
jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
|
0.00235849060.2%
|
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