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package jalview.ws2.actions.secstructpred; |
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import java.util.List; |
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import java.util.Objects; |
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import jalview.api.AlignViewportI; |
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import jalview.datamodel.AlignmentI; |
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import jalview.viewmodel.AlignmentViewport; |
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import jalview.ws.params.ArgumentI; |
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import jalview.ws2.actions.BaseAction; |
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import jalview.ws2.actions.BaseTask; |
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import jalview.ws2.api.Credentials; |
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import jalview.ws2.client.api.SecStructPredWebServiceClientI; |
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import jalview.ws2.client.api.WebServiceClientI; |
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| 0% |
Uncovered Elements: 14 (14) |
Complexity: 5 |
Complexity Density: 0.62 |
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public class SecStructPredAction extends BaseAction<AlignmentI> |
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{ |
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Uncovered Elements: 8 (8) |
Complexity: 3 |
Complexity Density: 0.6 |
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public static class Builder extends BaseAction.Builder<SecStructPredAction> |
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{ |
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protected SecStructPredWebServiceClientI client; |
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protected boolean msaMode; |
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| 0% |
Uncovered Elements: 3 (3) |
Complexity: 1 |
Complexity Density: 0.33 |
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 private Builder(SecStructPredWebServiceClientI client)... |
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{ |
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super(); |
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Objects.requireNonNull(client); |
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this.client = client; |
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} |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
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public void msaMode(boolean msa)... |
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{ |
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this.msaMode = msa; |
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} |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
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public SecStructPredAction build()... |
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{ |
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return new SecStructPredAction(this); |
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} |
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} |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
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public static Builder newBuilder(SecStructPredWebServiceClientI client)... |
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{ |
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return new Builder(client); |
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} |
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protected final SecStructPredWebServiceClientI client; |
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protected boolean msaMode; |
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| 0% |
Uncovered Elements: 3 (3) |
Complexity: 1 |
Complexity Density: 0.33 |
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public SecStructPredAction(Builder builder)... |
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{ |
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super(builder); |
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client = builder.client; |
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msaMode = builder.msaMode; |
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} |
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| 0% |
Uncovered Elements: 5 (5) |
Complexity: 2 |
Complexity Density: 0.67 |
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public BaseTask<?, AlignmentI> createTask(AlignViewportI viewport,... |
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List<ArgumentI> args, Credentials credentials) |
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{ |
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if (msaMode) |
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return new SecStructPredMsaTask(client, args, credentials, viewport); |
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else |
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return new SecStructPredPDBSearchTask(client, args, credentials, viewport); |
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} |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
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@Override... |
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public boolean isActive(AlignmentViewport viewport) |
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{ |
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return false; |
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} |
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} |
