Project overview

Branches:

45,094

Statements:

121,258

Methods:

17,837

Classes:

1,609

Files:

1,272

Packages:

135

LOC:

460,862

NCLOC:

291,156

Total complexity:

49,557

Complexity density:

0.41

Statements/Method:

6.8

Methods/Class:

11.09

Classes/Package:

11.92

Average method complexity:

2.78

1.	0.00%	Bits.letter_f() : void 1
2.	0.00%	CaseMgr.toLowerCase(char) : char 706
3.	0.00%	CaseMgr.toUpperCase(char) : char 675
4.	0.00%	ResidueProperties.<clinit>, line 1115() 1
5.	0.00%	Jalview2XML.saveState(AlignmentPanel,String,boolean,JarOutputStream,List<String>) : JalviewModel 117
6.	0.00%	GAlignFrame.jbInit() : void 7
7.	0.00%	Jalview2XML.loadFromObject(JalviewModel,String,File,boolean,jarInputStreamProvider) : AlignFrame 127
8.	0.00%	AnnotationRenderer.drawComponent(AwtRenderPanelI,AlignViewportI,Graphics,int,int,int) : boolean 231
9.	0.00%	Commands.processLinked(String) : boolean 102
10.	0.00%	AnnotationFile.parseAnnotationFrom(AlignmentI,HiddenColumns,BufferedReader) : boolean 85
11.	0.00%	AlignFrame.jbInit() : void 2
12.	0.00%	Regex.compile1(StrPos,Rthings) : void 95
13.	0.00%	AlignFrame.actionPerformed(ActionEvent) : void 87
14.	0.00%	Jalview.doMain(String[]) : void 98
15.	0.00%	AnnotationLabels.drawLabels(Graphics,boolean,int,boolean,boolean,FontMetrics,boolean) : int 95
16.	0.00%	RestJobThread.realiseResults(boolean) : void 57
17.	0.00%	Jalview2XML.loadViewport(String,File,List<JSeq>,List<SequenceI>,AlignmentI,JalviewModel,Viewport,String,String,List<JvAnnotRow>) : AlignFrame 45
18.	0.00%	StockholmFile.parse() : void 60
19.	0.00%	AnnotationFile.printAnnotations(AlignmentAnnotation[],List<SequenceGroup>,Hashtable,HiddenColumns,AlignmentI,ViewDef) : String 68
20.	0.00%	VamsasAppDatastore.storeVAMSAS(AlignViewport,String) : boolean 57

Coverage Report