Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
BaseAction	27	22	13	0.00%	Show methods
BaseAction.Builder	29	10	11	0.00%	Show methods

Class BaseAction

Class BaseAction	Line # 27	Total Statements 22	Complexity 13	TOTAL Coverage 0.00%
BaseAction(Builder<? extends BaseAction<R>>)   BaseAction(Builder<? extends BaseAction<R>>)	122122	10.010	1.01	0.0 0.00%
getWebService() : WebService<? extends ActionI<R>>   getWebService() : WebService<? extends ActionI<R>>	136136	1.01	1.01	0.0 0.00%
getName() : String   getName() : String	142142	1.01	1.01	0.0 0.00%
getFullName() : String   getFullName() : String	154154	3.03	3.03	0.0 0.00%
getTooltip() : String   getTooltip() : String	162162	1.01	1.01	0.0 0.00%
getSubcategory() : String   getSubcategory() : String	168168	1.01	1.01	0.0 0.00%
getMinSequences() : int   getMinSequences() : int	174174	1.01	1.01	0.0 0.00%
getMaxSequences() : int   getMaxSequences() : int	180180	1.01	1.01	0.0 0.00%
doAllowProtein() : boolean   doAllowProtein() : boolean	186186	1.01	1.01	0.0 0.00%
doAllowNucleotide() : boolean   doAllowNucleotide() : boolean	192192	1.01	1.01	0.0 0.00%
getRequiredCredentials() : EnumSet<CredentialType>   getRequiredCredentials() : EnumSet<CredentialType>	198198	1.01	1.01	0.0 0.00%

 

Class BaseAction.Builder

Class BaseAction.Builder	Line # 29	Total Statements 10	Complexity 11	TOTAL Coverage 0.00%
Builder()   Builder()	4949	0.00	1.01	-1.0 -1.0 -
name(String) : void   name(String) : void	5353	1.01	1.01	0.0 0.00%
webService(WebService<A>) : void   webService(WebService<A>) : void	5858	1.01	1.01	0.0 0.00%
tooltip(String) : void   tooltip(String) : void	6363	1.01	1.01	0.0 0.00%
subcategory(String) : void   subcategory(String) : void	6868	1.01	1.01	0.0 0.00%
minSequences(int) : void   minSequences(int) : void	7373	1.01	1.01	0.0 0.00%
maxSequecnes(int) : void   maxSequecnes(int) : void	7878	1.01	1.01	0.0 0.00%
allowProtein(boolean) : void   allowProtein(boolean) : void	8383	1.01	1.01	0.0 0.00%
allowNucleotide(boolean) : void   allowNucleotide(boolean) : void	8888	1.01	1.01	0.0 0.00%
addRequiredCredential(CredentialType) : void   addRequiredCredential(CredentialType) : void	9393	1.01	1.01	0.0 0.00%
requiredCredentials(EnumSet<CredentialType>) : void   requiredCredentials(EnumSet<CredentialType>) : void	9898	1.01	1.01	0.0 0.00%

 

Contributing tests

Source view

1		package jalview.ws2.actions;
2
3		import java.util.EnumSet;
4		import java.util.List;
5		import java.util.Objects;
6
7		import jalview.gui.AlignViewport;
8		import jalview.viewmodel.AlignmentViewport;
9		import jalview.ws.params.ArgumentI;
10		import jalview.ws2.actions.api.ActionI;
11		import jalview.ws2.actions.api.TaskEventListener;
12		import jalview.ws2.actions.api.TaskI;
13		import jalview.ws2.api.CredentialType;
14		import jalview.ws2.api.Credentials;
15		import jalview.ws2.api.WebService;
16
17		/**
18		* An abstract base class storing common data and implementing their getters
19		* defined in {@link ActionI} interface. The concrete action implementations are
20		* encouraged to extend this class and provide their own {@code perform} and
21		* {@code isActive} implementations.
22		*
23		* @author mmwarowny
24		* @param <R>
25		* task result type
26		*/
		0% Uncovered Elements: 35 (35) Complexity: 13 Complexity Density: 0.59
27		public abstract class BaseAction<R> implements ActionI<R>
28		{
		0% Uncovered Elements: 21 (21) Complexity: 11 Complexity Density: 1.1
29		public static abstract class Builder<A extends BaseAction<?>>
30		{
31		protected WebService<A> webService;
32
33		protected String name = null;
34
35		protected String tooltip = "";
36
37		protected String subcategory = null;
38
39		protected int minSequences = -1;
40
41		protected int maxSequences = -1;
42
43		protected boolean allowProtein = true;
44
45		protected boolean allowNucleotide = true;
46
47		protected EnumSet<CredentialType> requiredCredentials = EnumSet.noneOf(CredentialType.class);
48
		- Uncovered Elements: 0 (0) Complexity: 1 Complexity Density: -
49	0	public Builder()...
50		{
51		}
52
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
53	0	public void name(String val)...
54		{
55	0	this.name = val;
56		}
57
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
58	0	public void webService(WebService<A> val)...
59		{
60	0	this.webService = val;
61		}
62
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
63	0	public void tooltip(String val)...
64		{
65	0	tooltip = val;
66		}
67
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
68	0	public void subcategory(String val)...
69		{
70	0	subcategory = val;
71		}
72
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
73	0	public void minSequences(int val)...
74		{
75	0	minSequences = val;
76		}
77
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
78	0	public void maxSequecnes(int val)...
79		{
80	0	maxSequences = val;
81		}
82
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
83	0	public void allowProtein(boolean val)...
84		{
85	0	allowProtein = val;
86		}
87
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
88	0	public void allowNucleotide(boolean val)...
89		{
90	0	allowNucleotide = val;
91		}
92
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
93	0	public void addRequiredCredential(CredentialType val)...
94		{
95	0	requiredCredentials.add(val);
96		}
97
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
98	0	public void requiredCredentials(EnumSet<CredentialType> val)...
99		{
100	0	requiredCredentials = val;
101		}
102		}
103
104		protected final WebService<? extends ActionI<R>> webService;
105
106		protected final String name;
107
108		protected final String tooltip;
109
110		protected final String subcategory;
111
112		protected final int minSequences;
113
114		protected final int maxSequences;
115
116		protected final boolean allowProtein;
117
118		protected final boolean allowNucleotide;
119
120		protected final EnumSet<CredentialType> requiredCredentials;
121
		0% Uncovered Elements: 10 (10) Complexity: 1 Complexity Density: 0.1
122	0	protected BaseAction(Builder<? extends BaseAction<R>> builder)...
123		{
124	0	Objects.requireNonNull(builder.webService);
125	0	this.webService = builder.webService;
126	0	this.name = builder.name;
127	0	this.tooltip = builder.tooltip;
128	0	this.subcategory = builder.subcategory;
129	0	this.minSequences = builder.minSequences;
130	0	this.maxSequences = builder.maxSequences;
131	0	this.allowProtein = builder.allowProtein;
132	0	this.allowNucleotide = builder.allowNucleotide;
133	0	this.requiredCredentials = builder.requiredCredentials;
134		}
135
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
136	0	@Override...
137		public WebService<? extends ActionI<R>> getWebService()
138		{
139	0	return webService;
140		}
141
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
142	0	@Override...
143		public String getName()
144		{
145	0	return name;
146		}
147
148		/**
149		* Returns a full name of the action which comprises of the service name and
150		* the action name if present.
151		*
152		* @return full name of this action
153		*/
		0% Uncovered Elements: 5 (5) Complexity: 3 Complexity Density: 1
154	0	public String getFullName()...
155		{
156	0	if (name == null || name.isEmpty())
157	0	return webService.getName();
158		else
159	0	return webService.getName() + " " + name;
160		}
161
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
162	0	@Override...
163		public String getTooltip()
164		{
165	0	return tooltip;
166		}
167
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
168	0	@Override...
169		public String getSubcategory()
170		{
171	0	return subcategory;
172		}
173
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
174	0	@Override...
175		public int getMinSequences()
176		{
177	0	return minSequences;
178		}
179
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
180	0	@Override...
181		public int getMaxSequences()
182		{
183	0	return maxSequences;
184		}
185
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
186	0	@Override...
187		public boolean doAllowProtein()
188		{
189	0	return allowProtein;
190		}
191
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
192	0	@Override...
193		public boolean doAllowNucleotide()
194		{
195	0	return allowNucleotide;
196		}
197
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
198	0	@Override...
199		public EnumSet<CredentialType> getRequiredCredentials()
200		{
201	0	return requiredCredentials;
202		}
203		}