Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
AnnotationAction	15	11	7	0.00%	Show methods
AnnotationAction.Builder	20	7	5	0.00%	Show methods

Class AnnotationAction

Class AnnotationAction	Line # 15	Total Statements 11	Complexity 7	TOTAL Coverage 0.00%
newBuilder(AnnotationWebServiceClientI) : Builder   newBuilder(AnnotationWebServiceClientI) : Builder	6767	1.01	1.01	0.0 0.00%
AnnotationAction(Builder)   AnnotationAction(Builder)	8080	5.05	1.01	0.0 0.00%
createTask(AlignViewportI,List<ArgumentI>,Credentials) : AnnotationTask   createTask(AlignViewportI,List<ArgumentI>,Credentials) : AnnotationTask	8989	1.01	1.01	0.0 0.00%
isAlignmentAnalysis() : boolean   isAlignmentAnalysis() : boolean	9999	1.01	1.01	0.0 0.00%
getRequireAlignedSequences() : boolean   getRequireAlignedSequences() : boolean	107107	1.01	1.01	0.0 0.00%
getFilterSymbols() : boolean   getFilterSymbols() : boolean	115115	1.01	1.01	0.0 0.00%
isActive(AlignmentViewport) : boolean   isActive(AlignmentViewport) : boolean	120120	1.01	1.01	0.0 0.00%

 

Class AnnotationAction.Builder

Class AnnotationAction.Builder	Line # 20	Total Statements 7	Complexity 5	TOTAL Coverage 0.00%
Builder(AnnotationWebServiceClientI)   Builder(AnnotationWebServiceClientI)	3030	3.03	1.01	0.0 0.00%
alignmentAnalysis(boolean) : void   alignmentAnalysis(boolean) : void	4040	1.01	1.01	0.0 0.00%
requireAlignedSequences(boolean) : void   requireAlignedSequences(boolean) : void	4848	1.01	1.01	0.0 0.00%
filterSymbols(boolean) : void   filterSymbols(boolean) : void	5656	1.01	1.01	0.0 0.00%
build() : AnnotationAction   build() : AnnotationAction	6161	1.01	1.01	0.0 0.00%

 

Contributing tests

Source view

1		package jalview.ws2.actions.annotation;
2
3		import java.util.List;
4		import java.util.Objects;
5
6		import jalview.api.AlignViewportI;
7		import jalview.viewmodel.AlignmentViewport;
8		import jalview.ws.params.ArgumentI;
9		import jalview.ws2.actions.BaseAction;
10		import jalview.ws2.actions.api.TaskEventListener;
11		import jalview.ws2.actions.api.TaskI;
12		import jalview.ws2.api.Credentials;
13		import jalview.ws2.client.api.AnnotationWebServiceClientI;
14
		0% Uncovered Elements: 18 (18) Complexity: 7 Complexity Density: 0.64
15		public class AnnotationAction extends BaseAction<AnnotationResult>
16		{
17		/**
18		* A builder of {@link AnnotationAction} instances.
19		*/
		0% Uncovered Elements: 12 (12) Complexity: 5 Complexity Density: 0.71
20		public static class Builder extends BaseAction.Builder<AnnotationAction>
21		{
22		protected AnnotationWebServiceClientI client;
23
24		protected boolean alignmentAnalysis = false;
25
26		protected boolean requireAlignedSequences = false;
27
28		protected boolean filterSymbols = true;
29
		0% Uncovered Elements: 3 (3) Complexity: 1 Complexity Density: 0.33
30	0	public Builder(AnnotationWebServiceClientI client)...
31		{
32	0	super();
33	0	Objects.requireNonNull(client);
34	0	this.client = client;
35		}
36
37		/**
38		* Set if action is an alignment analysis action.
39		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
40	0	public void alignmentAnalysis(boolean val)...
41		{
42	0	alignmentAnalysis = val;
43		}
44
45		/**
46		* Set if action require aligned sequences.
47		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
48	0	public void requireAlignedSequences(boolean val)...
49		{
50	0	requireAlignedSequences = val;
51		}
52
53		/**
54		* Set if action requires non-standard residues to be filtered out
55		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
56	0	public void filterSymbols(boolean val)...
57		{
58	0	filterSymbols = val;
59		}
60
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
61	0	public AnnotationAction build()...
62		{
63	0	return new AnnotationAction(this);
64		}
65		}
66
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
67	0	public static Builder newBuilder(AnnotationWebServiceClientI client)...
68		{
69	0	return new Builder(client);
70		}
71
72		protected final AnnotationWebServiceClientI client;
73
74		protected final boolean alignmentAnalysis;
75
76		protected final boolean requireAlignedSequences;
77
78		protected final boolean filterSymbols;
79
		0% Uncovered Elements: 5 (5) Complexity: 1 Complexity Density: 0.2
80	0	protected AnnotationAction(Builder builder)...
81		{
82	0	super(builder);
83	0	client = builder.client;
84	0	alignmentAnalysis = builder.alignmentAnalysis;
85	0	requireAlignedSequences = builder.requireAlignedSequences;
86	0	filterSymbols = builder.filterSymbols;
87		}
88
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
89	0	@Override...
90		public AnnotationTask createTask(AlignViewportI viewport,
91		List<ArgumentI> args, Credentials credentials)
92		{
93	0	return new AnnotationTask(client, this, args, credentials, viewport);
94		}
95
96		/**
97		* Return if this action is an alignment analysis service.
98		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
99	0	public boolean isAlignmentAnalysis()...
100		{
101	0	return alignmentAnalysis;
102		}
103
104		/**
105		* Return if this action require sequences to be aligned.
106		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
107	0	public boolean getRequireAlignedSequences()...
108		{
109	0	return requireAlignedSequences;
110		}
111
112		/**
113		* Return if this action require non-standard symbols to be filtered out.
114		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
115	0	public boolean getFilterSymbols()...
116		{
117	0	return filterSymbols;
118		}
119
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
120	0	@Override...
121		public boolean isActive(AlignmentViewport viewport)
122		{
123	0	return false;
124		}
125		}