Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
AlignmentAction	25	6	4	0.00%	Show methods
AlignmentAction.Builder	33	5	3	0.00%	Show methods

Class AlignmentAction

Class AlignmentAction	Line # 25	Total Statements 6	Complexity 4	TOTAL Coverage 0.00%
newBuilder(AlignmentWebServiceClientI) : Builder   newBuilder(AlignmentWebServiceClientI) : Builder	5757	1.01	1.01	0.0 0.00%
AlignmentAction(Builder)   AlignmentAction(Builder)	6666	3.03	1.01	0.0 0.00%
createTask(AlignViewportI,List<ArgumentI>,Credentials) : AlignmentTask   createTask(AlignViewportI,List<ArgumentI>,Credentials) : AlignmentTask	7373	1.01	1.01	0.0 0.00%
isActive(AlignmentViewport) : boolean   isActive(AlignmentViewport) : boolean	8585	1.01	1.01	0.0 0.00%

 

Class AlignmentAction.Builder

Class AlignmentAction.Builder	Line # 33	Total Statements 5	Complexity 3	TOTAL Coverage 0.00%
Builder(AlignmentWebServiceClientI)   Builder(AlignmentWebServiceClientI)	3939	3.03	1.01	0.0 0.00%
submitGaps(boolean) : void   submitGaps(boolean) : void	4646	1.01	1.01	0.0 0.00%
build() : AlignmentAction   build() : AlignmentAction	5151	1.01	1.01	0.0 0.00%

 

Contributing tests

Source view

1		package jalview.ws2.actions.alignment;
2
3		import java.util.List;
4		import java.util.Objects;
5
6		import jalview.api.AlignViewportI;
7		import jalview.viewmodel.AlignmentViewport;
8		import jalview.ws.params.ArgumentI;
9		import jalview.ws2.actions.BaseAction;
10		import jalview.ws2.actions.BaseTask;
11		import jalview.ws2.actions.PollingTaskExecutor;
12		import jalview.ws2.actions.api.TaskEventListener;
13		import jalview.ws2.actions.api.TaskI;
14		import jalview.ws2.api.Credentials;
15		import jalview.ws2.client.api.AlignmentWebServiceClientI;
16
17		/**
18		* Implementation of the {@link BaseAction} that runs alignment services. This
19		* type of action requires {@link AlignmentWebServiceClientI} to retrieve
20		* alignment result from the server.
21		*
22		* @author mmwarowny
23		*
24		*/
		0% Uncovered Elements: 10 (10) Complexity: 4 Complexity Density: 0.67
25		public class AlignmentAction extends BaseAction<AlignmentResult>
26		{
27		/**
28		* A builder for AlignemntActions. Adds {@code client} and {@code submitGaps}
29		* parameters to the base builder.
30		*
31		* @author mmwarowny
32		*/
		0% Uncovered Elements: 8 (8) Complexity: 3 Complexity Density: 0.6
33		public static class Builder extends BaseAction.Builder<AlignmentAction>
34		{
35		protected AlignmentWebServiceClientI client;
36
37		protected boolean submitGaps = false;
38
		0% Uncovered Elements: 3 (3) Complexity: 1 Complexity Density: 0.33
39	0	public Builder(AlignmentWebServiceClientI client)...
40		{
41	0	super();
42	0	Objects.requireNonNull(client);
43	0	this.client = client;
44		}
45
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
46	0	public void submitGaps(boolean val)...
47		{
48	0	submitGaps = val;
49		}
50
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
51	0	public AlignmentAction build()...
52		{
53	0	return new AlignmentAction(this);
54		}
55		}
56
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
57	0	public static Builder newBuilder(AlignmentWebServiceClientI client)...
58		{
59	0	return new Builder(client);
60		}
61
62		protected final boolean submitGaps;
63
64		protected final AlignmentWebServiceClientI client;
65
		0% Uncovered Elements: 3 (3) Complexity: 1 Complexity Density: 0.33
66	0	public AlignmentAction(Builder builder)...
67		{
68	0	super(builder);
69	0	submitGaps = builder.submitGaps;
70	0	client = builder.client;
71		}
72
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
73	0	@Override...
74		public AlignmentTask createTask(AlignViewportI viewport,
75		List<ArgumentI> args, Credentials credentials)
76		{
77	0	return new AlignmentTask(
78		client, this, args, credentials, viewport, submitGaps);
79		}
80
81		/**
82		* Returns if the action is active for the given viewport. Alignment services
83		* are non-interactive, so the action is never active.
84		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
85	0	@Override...
86		public boolean isActive(AlignmentViewport viewport)
87		{
88	0	return false;
89		}
90
91		}