Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
AlphaFoldAnnotationRowBuilder	27	13	6	0.00%	Show methods

Class AlphaFoldAnnotationRowBuilder

Class AlphaFoldAnnotationRowBuilder	Line # 27	Total Statements 13	Complexity 6	TOTAL Coverage 0.00%
AlphaFoldAnnotationRowBuilder()   AlphaFoldAnnotationRowBuilder()	3131	5.05	1.01	0.0 0.00%
processAnnotation(Annotation) : void   processAnnotation(Annotation) : void	4040	8.08	5.05	0.0 0.00%

 

Contributing tests

Source view

1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.datamodel.annotations;
22
23		import jalview.datamodel.Annotation;
24		import jalview.structure.StructureImportSettings;
25		import jalview.structure.StructureImportSettings.TFType;
26
		0% Uncovered Elements: 23 (23) Complexity: 6 Complexity Density: 0.46
27		public class AlphaFoldAnnotationRowBuilder extends AnnotationRowBuilder
28		{
29		public static final String LABEL = "Alphafold Reliability";
30
		0% Uncovered Elements: 5 (5) Complexity: 1 Complexity Density: 0.2
31	0	public AlphaFoldAnnotationRowBuilder()...
32		{
33	0	super(LABEL);
34	0	min = 0;
35	0	max = 100;
36	0	hasMinMax = true;
37	0	this.setTFType(StructureImportSettings.TFType.PLDDT);
38		}
39
		0% Uncovered Elements: 16 (16) Complexity: 5 Complexity Density: 0.62
40	0	@Override...
41		public void processAnnotation(Annotation annotation)
42		{
43	0	if (annotation.value > 90)
44		{
45		// Very High
46	0	annotation.colour = new java.awt.Color(0, 83, 214);
47		}
48	0	if (annotation.value <= 90)
49		{
50		// High
51	0	annotation.colour = new java.awt.Color(101, 203, 243);
52		}
53	0	if (annotation.value <= 70)
54		{
55		// Confident
56	0	annotation.colour = new java.awt.Color(255, 219, 19);
57		}
58	0	if (annotation.value < 50)
59		{
60	0	annotation.colour = new java.awt.Color(255, 125, 69);
61		}
62		}
63		}