Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
AnnotationRowBuilder	26	21	18	0.00%	Show methods

Class AnnotationRowBuilder

Class AnnotationRowBuilder	Line # 26	Total Statements 21	Complexity 18	TOTAL Coverage 0.00%
setTFType(TFType) : void   setTFType(TFType) : void	4343	1.01	1.01	0.0 0.00%
getTFType() : TFType   getTFType() : TFType	4848	1.01	1.01	0.0 0.00%
getName() : String   getName() : String	5353	1.01	1.01	0.0 0.00%
setName(String) : void   setName(String) : void	5858	1.01	1.01	0.0 0.00%
isHasDescription() : boolean   isHasDescription() : boolean	6363	1.01	1.01	0.0 0.00%
setHasDescription(boolean) : void   setHasDescription(boolean) : void	6868	1.01	1.01	0.0 0.00%
getDescription() : String   getDescription() : String	7373	1.01	1.01	0.0 0.00%
setDescription(String) : void   setDescription(String) : void	7878	1.01	1.01	0.0 0.00%
isHasMinMax() : boolean   isHasMinMax() : boolean	8383	1.01	1.01	0.0 0.00%
setHasMinMax(boolean) : void   setHasMinMax(boolean) : void	8888	1.01	1.01	0.0 0.00%
getMin() : float   getMin() : float	9393	1.01	1.01	0.0 0.00%
setMin(float) : void   setMin(float) : void	9898	1.01	1.01	0.0 0.00%
getMax() : float   getMax() : float	103103	1.01	1.01	0.0 0.00%
setMax(float) : void   setMax(float) : void	108108	1.01	1.01	0.0 0.00%
AnnotationRowBuilder(String)   AnnotationRowBuilder(String)	115115	1.01	1.01	0.0 0.00%
AnnotationRowBuilder(String,float,float,TFType)   AnnotationRowBuilder(String,float,float,TFType)	120120	2.02	1.01	0.0 0.00%
AnnotationRowBuilder(String,float,float)   AnnotationRowBuilder(String,float,float)	126126	4.04	1.01	0.0 0.00%
processAnnotation(Annotation) : void   processAnnotation(Annotation) : void	140140	0.00	1.01	-1.0 -1.0 -

 

Contributing tests

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1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.datamodel.annotations;
22
23		import jalview.datamodel.Annotation;
24		import jalview.structure.StructureImportSettings.TFType;
25
		0% Uncovered Elements: 39 (39) Complexity: 18 Complexity Density: 0.86
26		public class AnnotationRowBuilder
27		{
28
29		String name;
30
31		boolean hasDescription = false;
32
33		String description;
34
35		boolean hasMinMax = false;
36
37		/**
38		* the type of temperature factor plot (if it is one)
39		*/
40		// private TFType tfType = TFType.DEFAULT;
41		private TFType tfType = null;
42
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
43	0	public void setTFType(TFType t)...
44		{
45	0	tfType = t;
46		}
47
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
48	0	public TFType getTFType()...
49		{
50	0	return tfType;
51		}
52
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
53	0	public String getName()...
54		{
55	0	return name;
56		}
57
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
58	0	public void setName(String name)...
59		{
60	0	this.name = name;
61		}
62
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
63	0	public boolean isHasDescription()...
64		{
65	0	return hasDescription;
66		}
67
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
68	0	public void setHasDescription(boolean hasDescription)...
69		{
70	0	this.hasDescription = hasDescription;
71		}
72
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
73	0	public String getDescription()...
74		{
75	0	return description;
76		}
77
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
78	0	public void setDescription(String description)...
79		{
80	0	this.description = description;
81		}
82
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
83	0	public boolean isHasMinMax()...
84		{
85	0	return hasMinMax;
86		}
87
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
88	0	public void setHasMinMax(boolean hasMinMax)...
89		{
90	0	this.hasMinMax = hasMinMax;
91		}
92
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
93	0	public float getMin()...
94		{
95	0	return min;
96		}
97
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
98	0	public void setMin(float min)...
99		{
100	0	this.min = min;
101		}
102
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
103	0	public float getMax()...
104		{
105	0	return max;
106		}
107
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
108	0	public void setMax(float max)...
109		{
110	0	this.max = max;
111		}
112
113		float min, max;
114
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
115	0	public AnnotationRowBuilder(String string)...
116		{
117	0	name = string;
118		}
119
		0% Uncovered Elements: 2 (2) Complexity: 1 Complexity Density: 0.5
120	0	public AnnotationRowBuilder(String name, float min, float max, TFType tft)...
121		{
122	0	this(name, min, max);
123	0	setTFType(tft);
124		}
125
		0% Uncovered Elements: 4 (4) Complexity: 1 Complexity Density: 0.25
126	0	public AnnotationRowBuilder(String name, float min, float max)...
127		{
128	0	this(name);
129	0	this.min = min;
130	0	this.max = max;
131	0	this.hasMinMax = true;
132		}
133
134		/**
135		* override this to apply some form of transformation to the annotation - eg a
136		* colourscheme
137		*
138		* @param annotation
139		*/
		- Uncovered Elements: 0 (0) Complexity: 1 Complexity Density: -
140	0	public void processAnnotation(Annotation annotation)...
141		{
142
143		}
144		}