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package jalview.jbgui; |
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import java.awt.BorderLayout; |
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import java.awt.GridLayout; |
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import java.awt.event.ActionEvent; |
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import java.awt.event.ActionListener; |
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import javax.swing.JInternalFrame; |
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import javax.swing.JLabel; |
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import javax.swing.JMenu; |
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import javax.swing.JMenuBar; |
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import javax.swing.JMenuItem; |
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import javax.swing.JPanel; |
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import javax.swing.JRadioButtonMenuItem; |
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import jalview.api.structures.JalviewStructureDisplayI; |
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import jalview.gui.ColourMenuHelper.ColourChangeListener; |
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import jalview.util.ImageMaker.TYPE; |
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import jalview.util.MessageManager; |
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@SuppressWarnings("serial") |
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| 70.3% |
Uncovered Elements: 27 (91) |
Complexity: 21 |
Complexity Density: 0.3 |
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public abstract class GStructureViewer extends JInternalFrame |
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implements JalviewStructureDisplayI, ColourChangeListener |
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{ |
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protected JMenu savemenu; |
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protected JMenu viewMenu; |
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protected JMenu colourMenu; |
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protected JMenu chainMenu; |
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protected JMenu hetatmMenu; |
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protected JMenu viewerActionMenu; |
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protected JMenuItem alignStructs; |
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protected JMenuItem fitToWindow; |
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protected JRadioButtonMenuItem seqColour; |
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protected JRadioButtonMenuItem chainColour; |
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protected JRadioButtonMenuItem chargeColour; |
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protected JRadioButtonMenuItem viewerColour; |
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protected JMenuItem helpItem; |
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protected JLabel statusBar; |
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protected JPanel statusPanel; |
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| 66.7% |
Uncovered Elements: 1 (3) |
Complexity: 2 |
Complexity Density: 0.67 |
|
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public GStructureViewer()... |
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{ |
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try |
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{ |
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jbInit(); |
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} catch (Exception ex) |
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{ |
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ex.printStackTrace(); |
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} |
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} |
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| 100% |
Uncovered Elements: 0 (60) |
Complexity: 1 |
Complexity Density: 0.02 |
|
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private void jbInit() throws Exception... |
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{ |
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setFrameIcon(null); |
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setName("jalview-structureviewer"); |
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JMenuBar menuBar = new JMenuBar(); |
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this.setJMenuBar(menuBar); |
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JMenu fileMenu = new JMenu(); |
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fileMenu.setText(MessageManager.getString("action.file")); |
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savemenu = new JMenu(); |
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savemenu.setActionCommand( |
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MessageManager.getString("action.save_image")); |
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savemenu.setText(MessageManager.getString("action.save_as")); |
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JMenuItem pdbFile = new JMenuItem(); |
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pdbFile.setText(MessageManager.getString("label.pdb_file")); |
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pdbFile.addActionListener(new ActionListener() |
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{ |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
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@Override... |
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public void actionPerformed(ActionEvent actionEvent) |
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{ |
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pdbFile_actionPerformed(); |
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} |
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}); |
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JMenuItem png = new JMenuItem(); |
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png.setText("PNG"); |
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png.addActionListener(new ActionListener() |
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{ |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
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@Override... |
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public void actionPerformed(ActionEvent actionEvent) |
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{ |
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makePDBImage(TYPE.PNG); |
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} |
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}); |
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JMenuItem eps = new JMenuItem(); |
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eps.setText("EPS"); |
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eps.addActionListener(new ActionListener() |
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{ |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
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@Override... |
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public void actionPerformed(ActionEvent actionEvent) |
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{ |
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makePDBImage(TYPE.EPS); |
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} |
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}); |
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JMenuItem viewMapping = new JMenuItem(); |
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viewMapping.setText(MessageManager.getString("label.view_mapping")); |
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viewMapping.addActionListener(new ActionListener() |
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{ |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
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@Override... |
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public void actionPerformed(ActionEvent actionEvent) |
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{ |
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viewMapping_actionPerformed(); |
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} |
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}); |
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viewMenu = new JMenu(); |
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viewMenu.setText(MessageManager.getString("action.view")); |
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chainMenu = new JMenu(); |
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chainMenu.setText(MessageManager.getString("action.show_chain")); |
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hetatmMenu = new JMenu(); |
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hetatmMenu.setText(MessageManager.getString("action.show_hetatm")); |
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fitToWindow = new JMenuItem(); |
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fitToWindow.setText(MessageManager.getString("label.fit_to_window")); |
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fitToWindow.addActionListener(new ActionListener() |
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{ |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
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@Override... |
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public void actionPerformed(ActionEvent actionEvent) |
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{ |
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fitToWindow_actionPerformed(); |
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} |
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}); |
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JMenu helpMenu = new JMenu(); |
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helpMenu.setText(MessageManager.getString("action.help")); |
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helpItem = new JMenuItem(); |
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helpItem.addActionListener(new ActionListener() |
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{ |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
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@Override... |
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public void actionPerformed(ActionEvent actionEvent) |
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{ |
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showHelp_actionPerformed(); |
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} |
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}); |
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alignStructs = new JMenuItem(); |
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alignStructs.setText( |
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MessageManager.getString("label.superpose_structures")); |
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alignStructs.addActionListener(new ActionListener() |
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{ |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
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@Override... |
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public void actionPerformed(ActionEvent actionEvent) |
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{ |
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alignStructsWithAllAlignPanels(); |
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} |
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}); |
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viewerActionMenu = new JMenu(); |
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viewerActionMenu.setVisible(false); |
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viewerActionMenu.add(alignStructs); |
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colourMenu = new JMenu(); |
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colourMenu.setText(MessageManager.getString("label.colours")); |
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fileMenu.add(savemenu); |
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fileMenu.add(viewMapping); |
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savemenu.add(pdbFile); |
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savemenu.add(png); |
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savemenu.add(eps); |
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viewMenu.add(chainMenu); |
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viewMenu.add(hetatmMenu); |
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helpMenu.add(helpItem); |
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menuBar.add(fileMenu); |
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menuBar.add(viewMenu); |
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menuBar.add(colourMenu); |
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menuBar.add(viewerActionMenu); |
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menuBar.add(helpMenu); |
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statusPanel = new JPanel(); |
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statusPanel.setLayout(new GridLayout()); |
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this.getContentPane().add(statusPanel, BorderLayout.SOUTH); |
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statusBar = new JLabel(); |
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statusPanel.add(statusBar, null); |
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} |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
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protected void fitToWindow_actionPerformed()... |
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{ |
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getBinding().focusView(); |
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} |
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| - |
Uncovered Elements: 0 (0) |
Complexity: 1 |
Complexity Density: - |
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0 |
protected void highlightSelection_actionPerformed()... |
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{ |
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} |
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| - |
Uncovered Elements: 0 (0) |
Complexity: 1 |
Complexity Density: - |
|
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protected void viewerColour_actionPerformed()... |
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{ |
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} |
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protected abstract String alignStructsWithAllAlignPanels(); |
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| - |
Uncovered Elements: 0 (0) |
Complexity: 1 |
Complexity Density: - |
|
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0 |
public void pdbFile_actionPerformed()... |
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{ |
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} |
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| - |
Uncovered Elements: 0 (0) |
Complexity: 1 |
Complexity Density: - |
|
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0 |
public void makePDBImage(TYPE imageType)... |
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{ |
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} |
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| - |
Uncovered Elements: 0 (0) |
Complexity: 1 |
Complexity Density: - |
|
246 |
0 |
public void viewMapping_actionPerformed()... |
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{ |
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} |
250 |
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| - |
Uncovered Elements: 0 (0) |
Complexity: 1 |
Complexity Density: - |
|
251 |
0 |
public void seqColour_actionPerformed()... |
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{ |
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} |
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| - |
Uncovered Elements: 0 (0) |
Complexity: 1 |
Complexity Density: - |
|
256 |
0 |
public void chainColour_actionPerformed()... |
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{ |
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} |
260 |
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| - |
Uncovered Elements: 0 (0) |
Complexity: 1 |
Complexity Density: - |
|
261 |
0 |
public void chargeColour_actionPerformed()... |
262 |
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{ |
263 |
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} |
265 |
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| - |
Uncovered Elements: 0 (0) |
Complexity: 1 |
Complexity Density: - |
|
266 |
0 |
public void background_actionPerformed()... |
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{ |
268 |
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269 |
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} |
270 |
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| - |
Uncovered Elements: 0 (0) |
Complexity: 1 |
Complexity Density: - |
|
271 |
0 |
public void showHelp_actionPerformed()... |
272 |
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{ |
273 |
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274 |
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} |
275 |
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} |