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com.stevesoft.pat.patInf
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jalview.json.binding.biojs.BioJSReleasePojo
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com.stevesoft.pat.Rthings
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mc_view.Residue
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jalview.ext.jmol.JmolParser
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com.stevesoft.pat.StrPos
com.stevesoft.pat.StrPos
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jalview.io.FileLoader
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jalview.gui.SequenceRenderer
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jalview.gui.AppJmolBinding
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jalview.gui.JalviewChangeSupport
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0.550%
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com.stevesoft.pat.OrMark
com.stevesoft.pat.OrMark
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jalview.viewmodel.ViewportProperties
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0.550%
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mc_view.Bond
mc_view.Bond
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com.stevesoft.pat.wrap.StringWrap
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jalview.schemes.NucleotideAmbiguityColourScheme
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0.550%
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jalview.schemes.PurinePyrimidineColourScheme
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jalview.schemes.NucleotideColourScheme
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0.550%
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0.550%
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jalview.gui.SplashScreen
jalview.gui.SplashScreen
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com.stevesoft.pat.oneChar
com.stevesoft.pat.oneChar
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jalview.structure.StructureImportSettings
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mc_view.PDBChain
mc_view.PDBChain
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jalview.gui.ColourMenuHelper
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jalview.ext.jmol.JalviewJmolBinding
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jalview.io.BioJsHTMLOutput
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jalview.io.StructureFile
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jalview.datamodel.PDBEntry
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jalview.gui.AppJmol.RenderPanel
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jalview.ws.dbsources.EmblSource
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0.440%
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0.440%
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0.440%
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jalview.log.JalviewAppender
jalview.log.JalviewAppender
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0.388888938.9%
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org.json.simple.parser.Yylex
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jalview.analysis.AAFrequency
jalview.analysis.AAFrequency
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jalview.datamodel.SearchResults
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0.384615438.5%
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jalview.gui.AppJmol
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jalview.gui.IdCanvas
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jalview.gui.AlignmentPanel
jalview.gui.AlignmentPanel
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0.3698468837%
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jalview.util.Format
jalview.util.Format
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jalview.util.Comparison
jalview.util.Comparison
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0.3661417436.6%
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jalview.renderer.AnnotationRenderer
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jalview.util.MessageManager
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0.3571428735.7%
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jalview.datamodel.ResidueCount
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0.3563636235.6%
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jalview.datamodel.SequenceFeature
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jalview.io.AlignFile
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0.3493150834.9%
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0.3454545434.5%
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jalview.viewmodel.styles.ViewStyle
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0.344202934.4%
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jalview.viewmodel.ViewportRanges
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0.33993434%
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jalview.gui.StructureViewerBase
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0.332842433.3%
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jalview.gui.IdwidthAdjuster
jalview.gui.IdwidthAdjuster
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0.3289473732.9%
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jalview.datamodel.features.SequenceFeatures
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jalview.ws.rest.RestServiceDescription
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0.31531.5%
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jalview.ws.jws1.Discoverer
jalview.ws.jws1.Discoverer
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jalview.datamodel.Sequence
jalview.datamodel.Sequence
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jalview.renderer.seqfeatures.FeatureColourFinder
jalview.renderer.seqfeatures.FeatureColourFinder
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com.stevesoft.pat.Pattern
com.stevesoft.pat.Pattern
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0.3055555530.6%
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jalview.structure.StructureMapping
jalview.structure.StructureMapping
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0.2953367829.5%
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org.json.simple.parser.JSONParser
org.json.simple.parser.JSONParser
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jalview.ws.jws2.SequenceAnnotationWSClient
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jalview.gui.PaintRefresher
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jalview.ws.dbsources.EmblCdsSource
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ext.vamsas.ServiceHandle
ext.vamsas.ServiceHandle
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jalview.datamodel.Annotation
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jalview.schemes.JalviewColourScheme
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jalview.io.IdentifyFile
jalview.io.IdentifyFile
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0.282539728.3%
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jalview.datamodel.annotations.AnnotationRowBuilder
jalview.datamodel.annotations.AnnotationRowBuilder
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0.282051328.2%
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mc_view.Atom
mc_view.Atom
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0.282051328.2%
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jalview.viewmodel.AlignmentViewport
jalview.viewmodel.AlignmentViewport
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0.2817796528.2%
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com.stevesoft.pat.Or
com.stevesoft.pat.Or
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jalview.viewmodel.seqfeatures.FeatureRendererModel
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jalview.schemes.IdColourScheme
jalview.schemes.IdColourScheme
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0.2608695626.1%
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jalview.gui.JvSwingUtils
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0.258503425.9%
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jalview.datamodel.features.FeatureStore
jalview.datamodel.features.FeatureStore
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0.2567975825.7%
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com.stevesoft.pat.Regex
com.stevesoft.pat.Regex
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0.250909125.1%
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jalview.renderer.AnnotationRendererFactory
jalview.renderer.AnnotationRendererFactory
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0.2525%
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jalview.ext.jmol.JmolCommands
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0.2440944924.4%
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jalview.ws.uimodel.AlignAnalysisUIText
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0.2439024424.4%
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jalview.ws.rest.params.Alignment
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0.2435897424.4%
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jalview.util.HttpUtils
jalview.util.HttpUtils
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0.2397660824%
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jalview.gui.SeqCanvas
jalview.gui.SeqCanvas
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0.2364729523.6%
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jalview.datamodel.SequenceCursor
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0.2333333323.3%
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jalview.structure.StructureCommandsBase
jalview.structure.StructureCommandsBase
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0.2317073223.2%
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jalview.datamodel.SecondaryStructureCount
jalview.datamodel.SecondaryStructureCount
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0.2304687523%
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com.stevesoft.pat.Range
com.stevesoft.pat.Range
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0.2272727322.7%
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com.stevesoft.pat.Bracket
com.stevesoft.pat.Bracket
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0.22522.5%
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jalview.datamodel.features.FeatureAttributes
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0.224806222.5%
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jalview.ws.jws2.Jws2Client
jalview.ws.jws2.Jws2Client
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0.2228915722.3%
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jalview.viewmodel.seqfeatures.FeaturesDisplayed
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0.2187521.9%
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jalview.io.FileParse
jalview.io.FileParse
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0.2144846821.4%
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jalview.io.PDBFeatureSettings
jalview.io.PDBFeatureSettings
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0.2142857221.4%
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jalview.util.QuickSort
jalview.util.QuickSort
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0.2135922321.4%
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jalview.gui.ScalePanel
jalview.gui.ScalePanel
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0.2134831421.3%
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jalview.datamodel.features.FeatureAttributes.AttributeData
jalview.datamodel.features.FeatureAttributes.AttributeData
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0.2127659621.3%
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jalview.gui.AnnotationLabels
jalview.gui.AnnotationLabels
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0.2110497221.1%
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jalview.ws.rest.InputType
jalview.ws.rest.InputType
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0.2056074720.6%
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jalview.analysis.scoremodels.ScoreModels
jalview.analysis.scoremodels.ScoreModels
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0.220%
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jalview.analysis.AnnotationSorter
jalview.analysis.AnnotationSorter
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0.1970443319.7%
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jalview.datamodel.Alignment
jalview.datamodel.Alignment
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0.1873840418.7%
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jalview.datamodel.SearchResults.Match
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jalview.schemes.TCoffeeColourScheme
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0.1803278618%
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jalview.gui.StructureViewer
jalview.gui.StructureViewer
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jalview.schemes.Blosum62ColourScheme
jalview.schemes.Blosum62ColourScheme
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com.stevesoft.pat.patInt
com.stevesoft.pat.patInt
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0.17517.5%
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jalview.io.JalviewFileChooser
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0.1743869217.4%
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jalview.io.AppletFormatAdapter
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0.1677018716.8%
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jalview.log.JLogger
jalview.log.JLogger
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jalview.ws.jws1.WS1Client
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0.1616%
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jalview.gui.AnnotationPanel
jalview.gui.AnnotationPanel
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0.1512605115.1%
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jalview.bin.Console
jalview.bin.Console
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0.1477832514.8%
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jalview.ws.jws2.JabaParamStore
jalview.ws.jws2.JabaParamStore
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0.1458333314.6%
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jalview.workers.AlignCalcWorker
jalview.workers.AlignCalcWorker
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0.1428571514.3%
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jalview.gui.Desktop.MyDesktopPane
jalview.gui.Desktop.MyDesktopPane
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0.1428571514.3%
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jalview.util.Platform
jalview.util.Platform
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0.1415094314.2%
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jalview.schemes.PIDColourScheme
jalview.schemes.PIDColourScheme
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0.1333333413.3%
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jalview.structure.AtomSpec
jalview.structure.AtomSpec
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0.1279069812.8%
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jalview.gui.AlignFrame
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jalview.datamodel.DBRefEntry
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jalview.util.StringUtils
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jalview.io.FileFormat
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jalview.renderer.ResidueShader
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jalview.gui.Console
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jalview.datamodel.ContactMapHolder
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jalview.datamodel.HiddenColumns
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jalview.bin.Cache
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jalview.analysis.GeneticCodes
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jalview.datamodel.HiddenSequences
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jalview.gui.WsParamSetManager
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org.json.simple.JSONObject
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jalview.util.MapList
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com.stevesoft.pat.RegRes
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jalview.datamodel.Mapping
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mc_view.PDBfile
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jalview.bin.Jalview
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org.json.simple.JSONArray
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