Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
WindowsFileLoadAndSaveTest	48	12	3	0.00%	Show methods

Class WindowsFileLoadAndSaveTest

Class WindowsFileLoadAndSaveTest	Line # 48	Total Statements 12	Complexity 3	TOTAL Coverage 0.00%
setUpJvOptionPane() : void   setUpJvOptionPane() : void	5656	2.02	1.01	0.0 0.00%
loadAndSaveAlignment() : void   loadAndSaveAlignment() : void	6868	8.08	1.01	0.0 0.00%
cleanupTmpFiles() : void   cleanupTmpFiles() : void	8585	2.02	1.01	0.0 0.00%

 

Contributing tests

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1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.io;
22
23		import java.io.File;
24		import java.io.IOException;
25		import java.nio.file.Files;
26		import java.nio.file.StandardCopyOption;
27
28		import org.testng.Assert;
29		import org.testng.annotations.AfterClass;
30		import org.testng.annotations.BeforeClass;
31		import org.testng.annotations.Test;
32
33		import jalview.datamodel.AlignmentI;
34		import jalview.gui.AlignFrame;
35		import jalview.gui.JvOptionPane;
36
37		/**
38		* WindowsFileSaveTest simply opens an alignment file and then tries to save it.
39		* This failed in Windows from 2.11.0 to 2.11.1.6 due to a combination of the
40		* opening file handle being left open ad infinitum, causing the BackupFiles
41		* operation of moving the saved (temp) file onto the original filename to fail,
42		* but only in Windows. See: https://issues.jalview.org/browse/JAL-3628
43		* https://issues.jalview.org/browse/JAL-3703
44		* https://issues.jalview.org/browse/JAL-3935 These issues are really all fixed
45		* by JAL-3703 This test is to ensure it doesn't start again, but note that this
46		* test will only fail in Windows.
47		*/
		0% Uncovered Elements: 15 (15) Complexity: 3 Complexity Density: 0.25
48		public class WindowsFileLoadAndSaveTest
49		{
50
51		private final static String fileName = "examples" + File.separator
52		+ "uniref50.fa";
53
54		private final static String testFileName = fileName + "-TEST";
55
		0% Uncovered Elements: 2 (2) Complexity: 1 Complexity Density: 0.5
56	0	@BeforeClass(alwaysRun = true)...
57		public void setUpJvOptionPane()
58		{
59	0	JvOptionPane.setInteractiveMode(false);
60	0	JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
61		}
62
63		/**
64		* Test saving and re-reading in a specified format
65		*
66		* @throws IOException
67		*/
		0% Uncovered Elements: 8 (8) Complexity: 1 Complexity Density: 0.12 4-
68	0	@Test(groups = { "Functional" })...
69		public void loadAndSaveAlignment() throws IOException
70		{
71	0	File file = new File(fileName);
72	0	File testFile = new File(testFileName);
73	0	Files.copy(file.toPath(), testFile.toPath(),
74		StandardCopyOption.REPLACE_EXISTING);
75	0	FormatAdapter fa = new FormatAdapter();
76	0	AlignmentI a = fa.readFile(testFile, DataSourceType.FILE,
77		FileFormat.Fasta);
78
79	0	AlignFrame af = new AlignFrame(a, 500, 500);
80	0	af.saveAlignment(testFileName, FileFormat.Fasta);
81
82	0	Assert.assertTrue(af.isSaveAlignmentSuccessful());
83		}
84
		0% Uncovered Elements: 2 (2) Complexity: 1 Complexity Density: 0.5
85	0	@AfterClass(alwaysRun = true)...
86		private void cleanupTmpFiles()
87		{
88	0	BackupFilesPresetEntry bfpe = BackupFilesPresetEntry
89		.getSavedBackupEntry();
90	0	BackupFilesTest.cleanupTmpFiles(testFileName, bfpe.suffix, bfpe.digits);
91		}
92
93		}