|
AMSAFile
AMSAFile
|
4.0
4
|
3.5
3.5
|
0.0
|
|
AlignFile
AlignFile
|
32.0
32
|
1.59375
1.59
|
0.0
|
|
AlignmentProperties
AlignmentProperties
|
5.0
5
|
3.2
3.2
|
0.0
|
|
AnnotationFile
AnnotationFile
|
26.0
26
|
11.384615
11.38
|
0.0
|
|
AnnotationFile.ViewDef
AnnotationFile.ViewDef
|
1.0
1
|
1.0
1
|
0.0
|
|
AppletFormatAdapter
AppletFormatAdapter
|
19.0
19
|
4.5263157
4.53
|
0.0
|
|
BLCFile
BLCFile
|
6.0
6
|
5.6666665
5.67
|
0.0
|
|
BackupFilenameFilter
BackupFilenameFilter
|
2.0
2
|
2.0
2
|
0.0
|
|
BackupFilenameParts
BackupFilenameParts
|
8.0
8
|
3.0
3
|
0.0
|
|
BackupFiles
BackupFiles
|
34.0
34
|
3.4117646
3.41
|
0.0
|
|
BackupFilesPresetEntry
BackupFilesPresetEntry
|
6.0
6
|
2.3333333
2.33
|
0.0
|
|
BioJsHTMLOutput
BioJsHTMLOutput
|
14.0
14
|
2.5
2.5
|
0.0
|
|
ClustalFile
ClustalFile
|
6.0
6
|
6.1666665
6.17
|
0.0
|
|
DBRefFile
DBRefFile
|
2.0
2
|
1.0
1
|
0.0
|
|
DataSourceType
DataSourceType
|
2.0
2
|
1.0
1
|
0.0
|
|
EMBLLikeFlatFile
EMBLLikeFlatFile
|
15.0
15
|
5.4
5.4
|
0.0
|
|
EmblFlatFile
EmblFlatFile
|
6.0
6
|
4.0
4
|
0.0
|
|
FastaFile
FastaFile
|
9.0
9
|
3.3333333
3.33
|
0.0
|
|
FeaturesFile
FeaturesFile
|
29.0
29
|
5.6551723
5.66
|
0.0
|
|
FileFormat
FileFormat
|
59.0
59
|
1.0169492
1.02
|
0.0
|
|
FileFormatException
FileFormatException
|
1.0
1
|
1.0
1
|
0.0
|
|
FileFormats
FileFormats
|
11.0
11
|
1.6363636
1.64
|
0.0
|
|
FileLoader
FileLoader
|
21.0
21
|
3.952381
3.95
|
0.0
|
|
FileParse
FileParse
|
34.0
34
|
2.9705882
2.97
|
0.0
|
|
FormatAdapter
FormatAdapter
|
17.0
17
|
1.7058823
1.71
|
0.0
|
|
GenBankFile
GenBankFile
|
6.0
6
|
3.6666667
3.67
|
0.0
|
|
HTMLOutput
HTMLOutput
|
12.0
12
|
2.3333333
2.33
|
0.0
|
|
HtmlFile
HtmlFile
|
15.0
15
|
1.4
1.4
|
0.0
|
|
HtmlSvgOutput
HtmlSvgOutput
|
9.0
9
|
2.4444444
2.44
|
0.0
|
|
IdentifyFile
IdentifyFile
|
9.0
9
|
10.666667
10.67
|
0.0
|
|
InputStreamParser
InputStreamParser
|
2.0
2
|
1.0
1
|
0.0
|
|
IntKeyStringValueEntry
IntKeyStringValueEntry
|
2.0
2
|
1.0
1
|
0.0
|
|
JPredFile
JPredFile
|
11.0
11
|
4.0
4
|
0.0
|
|
JSONFile
JSONFile
|
25.0
25
|
4.4
4.4
|
0.0
|
|
JSONFile.JSONExportSettings
JSONFile.JSONExportSettings
|
10.0
10
|
1.0
1
|
0.0
|
|
Jalview2xmlBase
Jalview2xmlBase
|
5.0
5
|
2.2
2.2
|
0.0
|
|
JalviewFileChooser
JalviewFileChooser
|
31.0
31
|
3.548387
3.55
|
0.0
|
|
JalviewFileChooser.RecentlyOpened
JalviewFileChooser.RecentlyOpened
|
3.0
3
|
1.6666666
1.67
|
0.0
|
|
JalviewFileChooser.recentlyOpenedCellRenderer
JalviewFileChooser.recentlyOpenedCellRenderer
|
1.0
1
|
10.0
10
|
0.0
|
|
JalviewFileFilter
JalviewFileFilter
|
15.0
15
|
2.4666667
2.47
|
0.0
|
|
JalviewFileView
JalviewFileView
|
6.0
6
|
3.3333333
3.33
|
0.0
|
|
JnetAnnotationMaker
JnetAnnotationMaker
|
2.0
2
|
21.0
21
|
0.0
|
|
MSFfile
MSFfile
|
6.0
6
|
8.166667
8.17
|
0.0
|
|
ModellerDescription
ModellerDescription
|
14.0
14
|
4.785714
4.79
|
0.0
|
|
ModellerDescription.resCode
ModellerDescription.resCode
|
2.0
2
|
1.0
1
|
0.0
|
|
NewickFile
NewickFile
|
26.0
26
|
4.3076925
4.31
|
0.0
|
|
PContactPredictionFile
PContactPredictionFile
|
8.0
8
|
1.5
1.5
|
0.0
|
|
PDBFeatureSettings
PDBFeatureSettings
|
4.0
4
|
2.25
2.25
|
0.0
|
|
PIRFile
PIRFile
|
5.0
5
|
4.8
4.8
|
0.0
|
|
PfamFile
PfamFile
|
6.0
6
|
4.1666665
4.17
|
0.0
|
|
PhylipFile
PhylipFile
|
7.0
7
|
3.7142856
3.71
|
0.0
|
|
PileUpfile
PileUpfile
|
4.0
4
|
5.0
5
|
0.0
|
|
RnamlFile
RnamlFile
|
9.0
9
|
2.7777777
2.78
|
0.0
|
|
ScoreMatrixFile
ScoreMatrixFile
|
9.0
9
|
5.7777777
5.78
|
0.0
|
|
SequenceAnnotationReport
SequenceAnnotationReport
|
13.0
13
|
7.0
7
|
0.0
|
|
SimpleBlastFile
SimpleBlastFile
|
6.0
6
|
8.0
8
|
0.0
|
|
StockholmFile
StockholmFile
|
17.0
17
|
10.411765
10.41
|
0.0
|
|
StructureFile
StructureFile
|
41.0
41
|
1.7073171
1.71
|
0.0
|
|
TCoffeeScoreFile
TCoffeeScoreFile
|
14.0
14
|
5.0
5
|
0.0
|
|
TCoffeeScoreFile.Block
TCoffeeScoreFile.Block
|
3.0
3
|
1.0
1
|
0.0
|
|
TCoffeeScoreFile.Header
TCoffeeScoreFile.Header
|
2.0
2
|
1.5
1.5
|
0.0
|
|
VamsasAppDatastore
VamsasAppDatastore
|
51.0
51
|
7.2941175
7.29
|
0.0
|
|
WSWUBlastClient
WSWUBlastClient
|
3.0
3
|
5.0
5
|
0.0
|
|
WSWUBlastClient.BlastThread
WSWUBlastClient.BlastThread
|
3.0
3
|
2.3333333
2.33
|
0.0
|
|
WSWUBlastClient.ImageTwirler
WSWUBlastClient.ImageTwirler
|
2.0
2
|
3.5
3.5
|
0.0
|
