Package	Files	Average Method Complexity	TOTAL Coverage
jalview.datamodel jalview.datamodel	87.0 87	2.8817778 2.88	0.0 0.00%

Class	Methods	Average Method Complexity	TOTAL Coverage
AlignExportSettingsAdapter AlignExportSettingsAdapter	11.0 11	1.0 1	0.0 0.00%
AlignedCodon AlignedCodon	5.0 5	2.2 2.2	0.0 0.00%
AlignedCodonFrame AlignedCodonFrame	29.0 29	3.3448277 3.34	0.0 0.00%
AlignedCodonFrame.SequenceToSequenceMapping AlignedCodonFrame.SequenceToSequenceMapping	10.0 10	3.5 3.5	0.0 0.00%
Alignment Alignment	98.0 98	3.2448978 3.24	0.0 0.00%
AlignmentAnnotation AlignmentAnnotation	55.0 55	5.4 5.4	0.0 0.00%
AlignmentAnnotation.AnnotCharSequence AlignmentAnnotation.AnnotCharSequence	6.0 6	2.8333333 2.83	0.0 0.00%
AlignmentExportData AlignmentExportData	7.0 7	1.0 1	0.0 0.00%
AlignmentOrder AlignmentOrder	15.0 15	2.2666667 2.27	0.0 0.00%
AlignmentView AlignmentView	25.0 25	6.88 6.88	0.0 0.00%
AlignmentView.ScGroup AlignmentView.ScGroup	4.0 4	1.5 1.5	0.0 0.00%
AllColsCollection AllColsCollection	4.0 4	1.0 1	0.0 0.00%
AllColsIterator AllColsIterator	4.0 4	1.25 1.25	0.0 0.00%
AllRowsCollection AllRowsCollection	5.0 5	1.0 1	0.0 0.00%
AllRowsIterator AllRowsIterator	4.0 4	1.25 1.25	0.0 0.00%
Annotation Annotation	6.0 6	3.0 3	0.0 0.00%
BinaryNode BinaryNode	24.0 24	1.5416666 1.54	0.0 0.00%
BinarySequence BinarySequence	8.0 8	2.75 2.75	0.0 0.00%
BinarySequence.InvalidSequenceTypeException BinarySequence.InvalidSequenceTypeException	1.0 1	1.0 1	0.0 0.00%
CigarArray CigarArray	12.0 12	4.1666665 4.17	0.0 0.00%
CigarBase CigarBase	13.0 13	7.6153846 7.62	0.0 0.00%
CigarCigar CigarCigar	2.0 2	2.5 2.5	0.0 0.00%
ColumnSelection ColumnSelection	24.0 24	4.3333335 4.33	0.0 0.00%
ColumnSelection.IntList ColumnSelection.IntList	18.0 18	1.8333334 1.83	0.0 0.00%
ContactListI ContactListI	1.0 1	1.0 1	0.0 0.00%
ContactListImpl ContactListImpl	8.0 8	2.125 2.12	0.0 0.00%
ContactListProviderI ContactListProviderI	2.0 2	1.0 1	0.0 0.00%
ContactMapHolder ContactMapHolder	5.0 5	3.2 3.2	0.0 0.00%
ContactMatrix ContactMatrix	15.0 15	2.6 2.6	0.0 0.00%
ContactMatrixI ContactMatrixI	15.0 15	2.3333333 2.33	0.0 0.00%
ContactRange ContactRange	15.0 15	1.0 1	0.0 0.00%
DBRefEntry DBRefEntry	24.0 24	2.9166667 2.92	0.0 0.00%
DBRefSource DBRefSource	3.0 3	2.6666667 2.67	0.0 0.00%
FeatureProperties FeatureProperties	2.0 2	2.5 2.5	0.0 0.00%
FloatContactMatrix FloatContactMatrix	14.0 14	1.4285715 1.43	0.0 0.00%
GeneLocus GeneLocus	7.0 7	1.1428572 1.14	0.0 0.00%
GraphLine GraphLine	3.0 3	3.3333333 3.33	0.0 0.00%
GroupSet GroupSet	17.0 17	1.8235294 1.82	0.0 0.00%
GroupSetHolder GroupSetHolder	2.0 2	1.0 1	0.0 0.00%
HiddenColumns HiddenColumns	33.0 33	2.969697 2.97	0.0 0.00%
HiddenColumnsCursor HiddenColumnsCursor	8.0 8	2.75 2.75	0.0 0.00%
HiddenCursorPosition HiddenCursorPosition	3.0 3	1.0 1	0.0 0.00%
HiddenSequences HiddenSequences	15.0 15	3.9333334 3.93	0.0 0.00%
MappedFeatures MappedFeatures	5.0 5	6.0 6	0.0 0.00%
Mapping Mapping	23.0 23	3.2608695 3.26	0.0 0.00%
Mapping.AlignedCodonIterator Mapping.AlignedCodonIterator	8.0 8	3.0 3	0.0 0.00%
MappingType MappingType	7.0 7	1.0 1	0.0 0.00%
PDBEntry PDBEntry	43.0 43	2.2093024 2.21	0.0 0.00%
PDBEntry.Type PDBEntry.Type	5.0 5	1.2 1.2	0.0 0.00%
Point Point	4.0 4	2.5 2.5	0.0 0.00%
Profile Profile	15.0 15	1.4 1.4	0.0 0.00%
Profiles Profiles	5.0 5	1.8 1.8	0.0 0.00%
Provenance Provenance	3.0 3	1.3333334 1.33	0.0 0.00%
ProvenanceEntry ProvenanceEntry	5.0 5	1.0 1	0.0 0.00%
Range Range	6.0 6	1.1666666 1.17	0.0 0.00%
RangeElementsIterator RangeElementsIterator	5.0 5	2.0 2	0.0 0.00%
RangeIterator RangeIterator	6.0 6	2.0 2	0.0 0.00%
ResidueCount ResidueCount	23.0 23	3.3913043 3.39	0.0 0.00%
ResidueCount.SymbolCounts ResidueCount.SymbolCounts	1.0 1	1.0 1	0.0 0.00%
RnaViewerModel RnaViewerModel	1.0 1	1.0 1	0.0 0.00%
SFSortByBegin SFSortByBegin	1.0 1	1.0 1	0.0 0.00%
SFSortByEnd SFSortByEnd	1.0 1	1.0 1	0.0 0.00%
SearchResults SearchResults	14.0 14	3.0714285 3.07	0.0 0.00%
SearchResults.Match SearchResults.Match	10.0 10	2.1 2.1	0.0 0.00%
SecondaryStructureAnnotation SecondaryStructureAnnotation	3.0 3	1.3333334 1.33	0.0 0.00%
SecondaryStructureCount SecondaryStructureCount	22.0 22	3.1818182 3.18	0.0 0.00%
SecondaryStructureCount.SymbolCounts SecondaryStructureCount.SymbolCounts	1.0 1	1.0 1	0.0 0.00%
SeqCigar SeqCigar	19.0 19	4.7894735 4.79	0.0 0.00%
SeqDistanceContactMatrix SeqDistanceContactMatrix	14.0 14	1.1428572 1.14	0.0 0.00%
Sequence Sequence	90.0 90	3.8666666 3.87	0.0 0.00%
Sequence.DBModList Sequence.DBModList	1.0 1	1.0 1	0.0 0.00%
SequenceCursor SequenceCursor	5.0 5	1.6 1.6	0.0 0.00%
SequenceDummy SequenceDummy	4.0 4	1.0 1	0.0 0.00%
SequenceFeature SequenceFeature	36.0 36	2.6388888 2.64	0.0 0.00%
SequenceGroup SequenceGroup	96.0 96	2.1145833 2.11	0.0 0.00%
SequenceNode SequenceNode	7.0 7	1.7142857 1.71	0.0 0.00%
SequencePoint SequencePoint	5.0 5	1.0 1	0.0 0.00%
StartRegionIterator StartRegionIterator	4.0 4	2.5 2.5	0.0 0.00%
StructureViewerModel StructureViewerModel	21.0 21	1.0 1	0.0 0.00%
StructureViewerModel.StructureData StructureViewerModel.StructureData	7.0 7	1.0 1	0.0 0.00%
VisibleColsCollection VisibleColsCollection	4.0 4	1.0 1	0.0 0.00%
VisibleContigsIterator VisibleContigsIterator	4.0 4	2.75 2.75	0.0 0.00%
VisibleRowsCollection VisibleRowsCollection	5.0 5	1.0 1	0.0 0.00%
VisibleRowsIterator VisibleRowsIterator	4.0 4	2.75 2.75	0.0 0.00%