Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
AnnotationExporterTest	35	18	2	0.00%	Show methods

Class AnnotationExporterTest

Class AnnotationExporterTest	Line # 35	Total Statements 18	Complexity 2	TOTAL Coverage 0.00%
setUpJvOptionPane() : void   setUpJvOptionPane() : void	3838	2.02	1.01	0.0 0.00%
testAnnotationExportAsCSV() : void   testAnnotationExportAsCSV() : void	4545	16.016	1.01	0.0 0.00%

 

Contributing tests

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1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.io;
22
23		import static org.testng.Assert.assertFalse;
24		import static org.testng.Assert.assertTrue;
25		import static org.testng.AssertJUnit.assertNotNull;
26
27		import org.testng.annotations.BeforeClass;
28		import org.testng.annotations.Test;
29
30		import jalview.datamodel.AlignmentAnnotation;
31		import jalview.gui.AlignFrame;
32		import jalview.gui.AnnotationExporter;
33		import jalview.gui.JvOptionPane;
34
		0% Uncovered Elements: 20 (20) Complexity: 2 Complexity Density: 0.11
35		public class AnnotationExporterTest
36		{
37
		0% Uncovered Elements: 2 (2) Complexity: 1 Complexity Density: 0.5
38	0	@BeforeClass(alwaysRun = true)...
39		public void setUpJvOptionPane()
40		{
41	0	JvOptionPane.setInteractiveMode(false);
42	0	JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
43		}
44
		0% Uncovered Elements: 16 (16) Complexity: 1 Complexity Density: 0.06 4-
45	0	@Test(groups = "Functional")...
46		public void testAnnotationExportAsCSV()
47		{
48		/*
49		* JAL-4342 test that export all alignment annotation as CSV or as an annotations file DOES NOT produce empty text box/file
50		*/
51	0	AlignFrame af = new FileLoader().LoadFileWaitTillLoaded(
52		">Seq1\nQRSIL\n>Seq2\nFTHND\n>Seq3\nRPVSL\n",
53		DataSourceType.PASTE);
54	0	AlignmentAnnotation[] annots = af.alignPanel.getAlignment()
55		.getAlignmentAnnotation();
56
57	0	assertTrue(annots.length > 1);
58		// set up exporter
59	0	AnnotationExporter ae = new AnnotationExporter(af.alignPanel);
60	0	ae.exportAnnotations();
61	0	ae.setExportAsCSV();
62
63	0	String exported;
64	0	exported = ae.getAnnotationsText();
65	0	assertNotNull(exported);
66	0	assertTrue(exported.contains(annots[0].label));
67	0	assertTrue(exported.contains(annots[1].label));
68
69		// just one annotation row
70	0	ae.exportAnnotation(annots[1]);
71	0	exported = ae.getAnnotationsText();
72	0	assertNotNull(exported);
73	0	assertFalse(exported.contains(annots[0].label));
74	0	assertTrue(exported.contains(annots[1].label));
75
76		}
77		}