Project Clover database Thu Nov 7 2024 17:01:39 GMT

Project overview

Branches:

41,442

Statements:

110,560

Methods:

15,909

Classes:

1,412

Files:

1,119

Packages:

114

LOC:

418,955

NCLOC:

265,406

Total complexity:

44,948

Complexity density:

0.41

Statements/Method:

6.95

Methods/Class:

11.27

Classes/Package:

12.39

Average method complexity:

2.83

Project	Packages	Average Method Complexity	TOTAL Coverage
Clover database Thu Nov 7 2024 17:01:39 GMT Clover database Thu Nov 7 2024 17:01:39 GMT	114.0 114	2.825319 2.83	0.0 0.00%

Metrics from sub-packages:

Separated Aggregated

Package (aggregated)	Packages	Average Method Complexity	TOTAL Coverage
uk.ac.ebi.www.picr.AccessionMappingService uk.ac.ebi.www.picr.AccessionMappingService	1.0 1	2.2608695 2.26	0.0 0.00%
uk.ac uk.ac	3.0 3	1.8311689 1.83	0.0 0.00%
jalview.ws.datamodel.alphafold jalview.ws.datamodel.alphafold	1.0 1	2.725 2.72	0.0 0.00%
jalview.fts.service.alphafold jalview.fts.service.alphafold	1.0 1	2.8333333 2.83	0.0 0.00%
jalview.api.analysis jalview.api.analysis	1.0 1	1.0 1	0.0 0.00%
jalview.analysis jalview.analysis	2.0 2	4.1168833 4.12	0.0 0.00%
jalview.analytics jalview.analytics	1.0 1	2.8965516 2.9	0.0 0.00%
jalview.ext.android jalview.ext.android	1.0 1	2.265625 2.27	0.0 0.00%
jalview.viewmodel.annotationfilter jalview.viewmodel.annotationfilter	1.0 1	1.0 1	0.0 0.00%
jalview.datamodel.annotations jalview.datamodel.annotations	1.0 1	1.2 1.2	0.0 0.00%
jalview.api jalview.api	3.0 3	1.0 1	0.0 0.00%
jalview.urls.applet jalview.urls.applet	1.0 1	1.0 1	0.0 0.00%
jalview.appletgui jalview.appletgui	1.0 1	3.3568282 3.36	0.0 0.00%
jalview.bin.argparser jalview.bin.argparser	1.0 1	3.2303922 3.23	0.0 0.00%
jalview.bin jalview.bin	3.0 3	3.7328646 3.73	0.0 0.00%
jalview.json.binding jalview.json.binding	2.0 2	1.2170542 1.22	0.0 0.00%
jalview.xml.binding jalview.xml.binding	4.0 4	1.1285444 1.13	0.0 0.00%
jalview.json.binding.biojs jalview.json.binding.biojs	1.0 1	1.125 1.12	0.0 0.00%
jalview.json.binding.biojson jalview.json.binding.biojson	1.0 1	1.2300885 1.23	0.0 0.00%
jalview.io.cache jalview.io.cache	1.0 1	2.1666667 2.17	0.0 0.00%
jalview.ext.rbvi.chimera jalview.ext.rbvi.chimera	1.0 1	1.8414634 1.84	0.0 0.00%
com com	3.0 3	4.845554 4.85	0.0 0.00%
jalview.commands jalview.commands	1.0 1	4.4492755 4.45	0.0 0.00%
jalview.controller jalview.controller	1.0 1	4.9333334 4.93	0.0 0.00%
jalview.fts.core jalview.fts.core	1.0 1	2.0496895 2.05	0.0 0.00%
darrylbu darrylbu	1.0 1	2.7222223 2.72	0.0 0.00%
jalview.ws.datamodel jalview.ws.datamodel	2.0 2	2.725 2.72	0.0 0.00%
jalview.datamodel jalview.datamodel	3.0 3	2.8484364 2.85	0.0 0.00%
jalview.ws.dbsources jalview.ws.dbsources	1.0 1	2.5243902 2.52	0.0 0.00%
jalview.urls.desktop jalview.urls.desktop	1.0 1	1.0 1	0.0 0.00%
jalview.util.dialogrunner jalview.util.dialogrunner	1.0 1	1.0 1	0.0 0.00%
jalview.ws.jws2.dm jalview.ws.jws2.dm	1.0 1	1.5952381 1.6	0.0 0.00%
uk.ac.ebi uk.ac.ebi	3.0 3	1.8311689 1.83	0.0 0.00%
jalview.ws.ebi jalview.ws.ebi	1.0 1	3.3 3.3	0.0 0.00%
ext.edu ext.edu	2.0 2	2.597015 2.6	0.0 0.00%
jalview.xml.binding.embl jalview.xml.binding.embl	1.0 1	1.1132076 1.11	0.0 0.00%
jalview.ext.ensembl jalview.ext.ensembl	1.0 1	2.0677083 2.07	0.0 0.00%
org.jibble.epsgraphics org.jibble.epsgraphics	1.0 1	1.6944444 1.69	0.0 0.00%
jalview.io.exceptions jalview.io.exceptions	1.0 1	1.0 1	0.0 0.00%
jalview.exceptions jalview.exceptions	1.0 1	1.0 1	0.0 0.00%
ext ext	3.0 3	2.436137 2.44	0.0 0.00%
jalview.ext jalview.ext	9.0 9	2.27256 2.27	0.0 0.00%
junit.extensions junit.extensions	1.0 1	2.3 2.3	0.0 0.00%
jalview.datamodel.features jalview.datamodel.features	1.0 1	2.8039215 2.8	0.0 0.00%
org.stackoverflowusers.file org.stackoverflowusers.file	1.0 1	1.8333334 1.83	0.0 0.00%
jalview.fts jalview.fts	6.0 6	2.2971015 2.3	0.0 0.00%
jalview.io.gff jalview.io.gff	1.0 1	4.1538463 4.15	0.0 0.00%
jalview.bin.groovy jalview.bin.groovy	1.0 1	1.75 1.75	0.0 0.00%
jalview.gui jalview.gui	2.0 2	2.8789566 2.88	0.0 0.00%
jalview.ws.gui jalview.ws.gui	1.0 1	3.6 3.6	0.0 0.00%
jalview.ext.htsjdk jalview.ext.htsjdk	1.0 1	2.375 2.38	0.0 0.00%
jalview.httpserver jalview.httpserver	1.0 1	1.875 1.88	0.0 0.00%
jalview.util.imagemaker jalview.util.imagemaker	1.0 1	1.2727273 1.27	0.0 0.00%
jalview.io jalview.io	7.0 7	3.9048078 3.9	0.0 0.00%
jalview.ws.io jalview.ws.io	1.0 1	1.2222222 1.22	0.0 0.00%
jalview.ws.jws2.jabaws2 jalview.ws.jws2.jabaws2	1.0 1	2.3125 2.31	0.0 0.00%
jalview jalview	93.0 93	2.7375815 2.74	0.0 0.00%
jalview.xml.binding.jalview jalview.xml.binding.jalview	1.0 1	1.108871 1.11	0.0 0.00%
jalview.javascript jalview.javascript	3.0 3	2.952381 2.95	0.0 0.00%
jalview.jbgui jalview.jbgui	1.0 1	1.2605233 1.26	0.0 0.00%
org.jibble org.jibble	1.0 1	1.6944444 1.69	0.0 0.00%
jalview.ext.jmol jalview.ext.jmol	1.0 1	2.902655 2.9	0.0 0.00%
org.json org.json	3.0 3	3.8202531 3.82	0.0 0.00%
jalview.json jalview.json	2.0 2	1.2170542 1.22	0.0 0.00%
jalview.javascript.json jalview.javascript.json	1.0 1	1.0 1	0.0 0.00%
junit junit	1.0 1	2.3 2.3	0.0 0.00%
jalview.ws.jws1 jalview.ws.jws1	1.0 1	3.4603174 3.46	0.0 0.00%
jalview.ws.jws2 jalview.ws.jws2	3.0 3	3.1285715 3.13	0.0 0.00%
jalview.log jalview.log	1.0 1	1.7446809 1.74	0.0 0.00%
jalview.util.matcher jalview.util.matcher	1.0 1	2.8947368 2.89	0.0 0.00%
jalview.math jalview.math	1.0 1	3.0204082 3.02	0.0 0.00%
mc_view mc_view	1.0 1	4.016129 4.02	0.0 0.00%
jalview.ws.io.mime jalview.ws.io.mime	1.0 1	1.2222222 1.22	0.0 0.00%
uk.ac.ebi.picr.model uk.ac.ebi.picr.model	1.0 1	1.62 1.62	0.0 0.00%
jalview.structures.models jalview.structures.models	1.0 1	3.0595238 3.06	0.0 0.00%
vamsas.objects vamsas.objects	1.0 1	1.6068965 1.61	0.0 0.00%
org org	5.0 5	3.3281553 3.33	0.0 0.00%
jalview.io.packed jalview.io.packed	1.0 1	2.6785715 2.68	0.0 0.00%
jalview.ext.paradise jalview.ext.paradise	1.0 1	1.2 1.2	0.0 0.00%
jalview.ws.params jalview.ws.params	2.0 2	1.3030303 1.3	0.0 0.00%
jalview.ws.rest.params jalview.ws.rest.params	1.0 1	2.2444444 2.24	0.0 0.00%
org.json.simple.parser org.json.simple.parser	1.0 1	4.5208335 4.52	0.0 0.00%
com.stevesoft.pat com.stevesoft.pat	2.0 2	4.845554 4.85	0.0 0.00%
jalview.fts.service.pdb jalview.fts.service.pdb	1.0 1	3.1 3.1	0.0 0.00%
uk.ac.ebi.picr uk.ac.ebi.picr	1.0 1	1.62 1.62	0.0 0.00%
uk.ac.ebi.www.picr uk.ac.ebi.www.picr	1.0 1	2.2608695 2.26	0.0 0.00%
ext.edu.ucsf.rbvi.strucviz2.port ext.edu.ucsf.rbvi.strucviz2.port	1.0 1	3.0769231 3.08	0.0 0.00%
jalview.project jalview.project	1.0 1	6.891667 6.89	0.0 0.00%
jalview.ext.pymol jalview.ext.pymol	1.0 1	2.3333333 2.33	0.0 0.00%
ext.edu.ucsf.rbvi ext.edu.ucsf.rbvi	2.0 2	2.597015 2.6	0.0 0.00%
jalview.ext.rbvi jalview.ext.rbvi	1.0 1	1.8414634 1.84	0.0 0.00%
jalview.renderer jalview.renderer	3.0 3	6.5142856 6.51	0.0 0.00%
jalview.rest jalview.rest	1.0 1	1.5 1.5	0.0 0.00%
jalview.ws.rest jalview.ws.rest	2.0 2	2.7631578 2.76	0.0 0.00%
jalview.schemes jalview.schemes	1.0 1	2.1713288 2.17	0.0 0.00%
jalview.analysis.scoremodels jalview.analysis.scoremodels	1.0 1	2.5054946 2.51	0.0 0.00%
jalview.renderer.seqfeatures jalview.renderer.seqfeatures	1.0 1	7.0 7	0.0 0.00%
jalview.viewmodel.seqfeatures jalview.viewmodel.seqfeatures	1.0 1	2.9041095 2.9	0.0 0.00%
jalview.ws.seqfetcher jalview.ws.seqfetcher	1.0 1	2.7083333 2.71	0.0 0.00%
jalview.fts.service jalview.fts.service	4.0 4	2.6434782 2.64	0.0 0.00%
jalview.xml.binding.sifts jalview.xml.binding.sifts	1.0 1	1.0746269 1.07	0.0 0.00%
jalview.ws.sifts jalview.ws.sifts	1.0 1	2.2727273 2.27	0.0 0.00%
jalview.ws.params.simple jalview.ws.params.simple	1.0 1	1.4347826 1.43	0.0 0.00%
org.json.simple org.json.simple	2.0 2	3.4234235 3.42	0.0 0.00%
vamsas.objects.simple vamsas.objects.simple	1.0 1	1.6068965 1.61	0.0 0.00%
jalview.ext.so jalview.ext.so	1.0 1	2.6111112 2.61	0.0 0.00%
org.stackoverflowusers org.stackoverflowusers	1.0 1	1.8333334 1.83	0.0 0.00%
com.stevesoft com.stevesoft	2.0 2	4.845554 4.85	0.0 0.00%
jalview.structure jalview.structure	1.0 1	2.7034483 2.7	0.0 0.00%
jalview.gui.structurechooser jalview.gui.structurechooser	1.0 1	3.1454546 3.15	0.0 0.00%
jalview.structures jalview.structures	1.0 1	3.0595238 3.06	0.0 0.00%
jalview.api.structures jalview.api.structures	1.0 1	1.0 1	0.0 0.00%
ext.edu.ucsf.rbvi.strucviz2 ext.edu.ucsf.rbvi.strucviz2	2.0 2	2.597015 2.6	0.0 0.00%
jalview.viewmodel.styles jalview.viewmodel.styles	1.0 1	1.021978 1.02	0.0 0.00%
jalview.fts.service.threedbeacons jalview.fts.service.threedbeacons	1.0 1	2.2105262 2.21	0.0 0.00%
ext.edu.ucsf ext.edu.ucsf	2.0 2	2.597015 2.6	0.0 0.00%
jalview.ws.uimodel jalview.ws.uimodel	1.0 1	1.0 1	0.0 0.00%
uk uk	3.0 3	1.8311689 1.83	0.0 0.00%
jalview.fts.service.uniprot jalview.fts.service.uniprot	1.0 1	2.682927 2.68	0.0 0.00%
jalview.xml.binding.uniprot jalview.xml.binding.uniprot	1.0 1	1.2043269 1.2	0.0 0.00%
jalview.urls jalview.urls	4.0 4	1.8709677 1.87	0.0 0.00%
darrylbu.util darrylbu.util	1.0 1	2.7222223 2.72	0.0 0.00%
jalview.util jalview.util	4.0 4	3.4358046 3.44	0.0 0.00%
jalview.ws.utils jalview.ws.utils	1.0 1	5.0 5	0.0 0.00%
jalview.json.binding.biojson.v1 jalview.json.binding.biojson.v1	1.0 1	1.2300885 1.23	0.0 0.00%
jalview.io.vamsas jalview.io.vamsas	1.0 1	3.4782608 3.48	0.0 0.00%
vamsas vamsas	2.0 2	1.6068965 1.61	0.0 0.00%
ext.vamsas ext.vamsas	1.0 1	2.1666667 2.17	0.0 0.00%
jalview.ext.varna jalview.ext.varna	1.0 1	7.3333335 7.33	0.0 0.00%
jalview.io.vcf jalview.io.vcf	1.0 1	4.3714285 4.37	0.0 0.00%
jalview.viewmodel jalview.viewmodel	4.0 4	1.8164794 1.82	0.0 0.00%
jalview.javascript.web jalview.javascript.web	1.0 1	1.75 1.75	0.0 0.00%
jalview.workers jalview.workers	1.0 1	2.8051949 2.81	0.0 0.00%
com.stevesoft.pat.wrap com.stevesoft.pat.wrap	1.0 1	1.4166666 1.42	0.0 0.00%
jalview.ws jalview.ws	19.0 19	2.834942 2.83	0.0 0.00%
uk.ac.ebi.www uk.ac.ebi.www	2.0 2	1.9326923 1.93	0.0 0.00%
jalview.xml jalview.xml	4.0 4	1.1285444 1.13	0.0 0.00%

Coverage Report

Project overview

Code metrics