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package jalview.gui; |
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import java.awt.BorderLayout; |
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import java.awt.Color; |
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import java.awt.Dimension; |
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import java.awt.GraphicsEnvironment; |
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import java.awt.GridBagConstraints; |
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import java.awt.GridBagLayout; |
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import java.awt.Rectangle; |
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import java.awt.Toolkit; |
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import java.awt.datatransfer.Clipboard; |
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import java.awt.datatransfer.StringSelection; |
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import java.awt.event.ActionEvent; |
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import java.awt.event.ActionListener; |
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import java.awt.event.MouseAdapter; |
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import java.awt.event.MouseEvent; |
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import java.awt.event.WindowAdapter; |
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import java.awt.event.WindowEvent; |
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import java.awt.event.WindowListener; |
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import java.io.IOException; |
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import java.io.PipedInputStream; |
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import java.io.PipedOutputStream; |
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import java.io.PrintStream; |
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import javax.swing.BorderFactory; |
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import javax.swing.JButton; |
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import javax.swing.JComboBox; |
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import javax.swing.JFrame; |
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import javax.swing.JLabel; |
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import javax.swing.JPanel; |
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import javax.swing.JScrollPane; |
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import javax.swing.JTextArea; |
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import javax.swing.SwingUtilities; |
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import javax.swing.border.Border; |
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import javax.swing.text.DefaultCaret; |
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|
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import jalview.log.JLoggerI.LogLevel; |
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import jalview.log.JLoggerLog4j; |
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import jalview.log.JalviewAppender; |
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import jalview.util.ChannelProperties; |
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import jalview.util.MessageManager; |
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import jalview.util.Platform; |
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68 |
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69 |
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70 |
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71 |
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72 |
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| 53% |
Uncovered Elements: 205 (436) |
Complexity: 110 |
Complexity Density: 0.36 |
|
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public class Console extends WindowAdapter |
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implements WindowListener, ActionListener, Runnable |
75 |
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{ |
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private JFrame frame; |
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private JTextArea textArea; |
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int byteslim = 102400, bytescut = 76800; |
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private Thread reader, reader2, textAppender; |
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private boolean quit; |
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private final PrintStream stdout = System.out, stderr = System.err; |
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93 |
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private PipedInputStream pin = new PipedInputStream(); |
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private PipedInputStream pin2 = new PipedInputStream(); |
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private StringBuffer displayPipe = new StringBuffer(); |
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Thread errorThrower; |
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Desktop parent = null; |
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private int MIN_WIDTH = 300; |
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private int MIN_HEIGHT = 250; |
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private JComboBox<LogLevel> logLevelCombo = new JComboBox<LogLevel>(); |
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protected LogLevel startingLogLevel = null; |
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| 0% |
Uncovered Elements: 4 (4) |
Complexity: 1 |
Complexity Density: 0.25 |
|
112 |
0 |
public Console()... |
113 |
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{ |
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|
115 |
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Dimension screenSize = Toolkit.getDefaultToolkit().getScreenSize(); |
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frame = initFrame("Java Console", screenSize.width / 2, |
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screenSize.height / 2, -1, -1); |
118 |
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frame.setDefaultCloseOperation(JFrame.DISPOSE_ON_CLOSE); |
119 |
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initConsole(true); |
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} |
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| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
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75 |
private void initConsole(boolean visible)... |
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{ |
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initConsole(visible, true); |
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} |
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128 |
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@param |
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@param |
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133 |
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| 94.6% |
Uncovered Elements: 4 (74) |
Complexity: 3 |
Complexity Density: 0.04 |
|
134 |
75 |
private void initConsole(boolean visible, boolean redirect)... |
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{ |
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137 |
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138 |
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textArea = new JTextArea(); |
139 |
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textArea.setEditable(false); |
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141 |
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DefaultCaret caret = (DefaultCaret) textArea.getCaret(); |
142 |
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caret.setUpdatePolicy(DefaultCaret.ALWAYS_UPDATE); |
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|
144 |
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Border pausedBorder = BorderFactory.createMatteBorder(2, 2, 2, 2, |
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textArea.getForeground()); |
146 |
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Border noBorder = BorderFactory.createEmptyBorder(2, 2, 2, 2); |
147 |
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JScrollPane scrollPane = new JScrollPane(textArea); |
148 |
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scrollPane.setBorder(noBorder); |
149 |
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textArea.addMouseListener(new MouseAdapter() |
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{ |
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| 0% |
Uncovered Elements: 11 (11) |
Complexity: 3 |
Complexity Density: 0.43 |
|
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0 |
@Override... |
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public void mouseClicked(MouseEvent e) |
153 |
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{ |
154 |
0 |
if (e.getButton() == MouseEvent.BUTTON1) |
155 |
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{ |
156 |
0 |
if (caret.getUpdatePolicy() == DefaultCaret.ALWAYS_UPDATE) |
157 |
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{ |
158 |
0 |
caret.setUpdatePolicy(DefaultCaret.NEVER_UPDATE); |
159 |
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scrollPane.setBorder(pausedBorder); |
160 |
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} |
161 |
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else |
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{ |
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caret.setUpdatePolicy(DefaultCaret.ALWAYS_UPDATE); |
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textArea.setCaretPosition(textArea.getDocument().getLength()); |
165 |
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scrollPane.setBorder(noBorder); |
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} |
167 |
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} |
168 |
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} |
169 |
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}); |
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|
171 |
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JButton clearButton = new JButton( |
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MessageManager.getString("action.clear")); |
173 |
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JButton copyToClipboardButton = new JButton( |
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MessageManager.getString("label.copy_to_clipboard")); |
175 |
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copyToClipboardButton.addActionListener(new ActionListener() |
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{ |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
177 |
0 |
@Override... |
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public void actionPerformed(ActionEvent e) |
179 |
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{ |
180 |
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copyConsoleTextToClipboard(); |
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} |
182 |
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}); |
183 |
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copyToClipboardButton.addMouseListener(new MouseAdapter() |
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{ |
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private Color bg = textArea.getBackground(); |
186 |
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187 |
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private Color fg = textArea.getForeground(); |
188 |
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| 0% |
Uncovered Elements: 2 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
189 |
0 |
@Override... |
190 |
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public void mousePressed(MouseEvent e) |
191 |
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{ |
192 |
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textArea.setBackground(textArea.getSelectionColor()); |
193 |
0 |
textArea.setForeground(textArea.getSelectedTextColor()); |
194 |
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} |
195 |
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| 0% |
Uncovered Elements: 2 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
196 |
0 |
@Override... |
197 |
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public void mouseReleased(MouseEvent e) |
198 |
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{ |
199 |
0 |
textArea.setBackground(bg); |
200 |
0 |
textArea.setForeground(fg); |
201 |
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} |
202 |
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|
203 |
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}); |
204 |
75 |
copyToClipboardButton.setToolTipText( |
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MessageManager.getString("label.copy_to_clipboard_tooltip")); |
206 |
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|
207 |
75 |
JLabel logLevelLabel = new JLabel( |
208 |
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MessageManager.getString("label.log_level") + ":"); |
209 |
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|
210 |
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|
211 |
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logLevelCombo.addItem(LogLevel.TRACE); |
212 |
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logLevelCombo.addItem(LogLevel.DEBUG); |
213 |
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logLevelCombo.addItem(LogLevel.INFO); |
214 |
75 |
logLevelCombo.addItem(LogLevel.WARN); |
215 |
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216 |
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217 |
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218 |
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219 |
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220 |
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221 |
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if (jalview.bin.Console.getLogger() == null) |
222 |
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{ |
223 |
0 |
startingLogLevel = jalview.bin.Console.getCachedLogLevel(); |
224 |
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} |
225 |
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else |
226 |
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{ |
227 |
75 |
startingLogLevel = jalview.bin.Console.getLogger().getLevel(); |
228 |
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} |
229 |
75 |
setChosenLogLevelCombo(); |
230 |
75 |
logLevelCombo.addActionListener(new ActionListener() |
231 |
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{ |
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| 0% |
Uncovered Elements: 4 (4) |
Complexity: 2 |
Complexity Density: 1 |
|
232 |
0 |
@Override... |
233 |
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public void actionPerformed(ActionEvent e) |
234 |
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{ |
235 |
0 |
if (jalview.bin.Console.log != null) |
236 |
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{ |
237 |
0 |
jalview.bin.Console.log |
238 |
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.setLevel((LogLevel) logLevelCombo.getSelectedItem()); |
239 |
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} |
240 |
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} |
241 |
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|
242 |
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}); |
243 |
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|
244 |
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|
245 |
75 |
frame.getContentPane().setLayout(new BorderLayout()); |
246 |
75 |
frame.getContentPane().add(scrollPane, BorderLayout.CENTER); |
247 |
75 |
JPanel southPanel = new JPanel(); |
248 |
75 |
southPanel.setLayout(new GridBagLayout()); |
249 |
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|
250 |
75 |
JPanel logLevelPanel = new JPanel(); |
251 |
75 |
logLevelPanel.setAlignmentX(JPanel.LEFT_ALIGNMENT); |
252 |
75 |
logLevelPanel.add(logLevelLabel); |
253 |
75 |
logLevelPanel.add(logLevelCombo); |
254 |
75 |
String logLevelTooltip = MessageManager.formatMessage( |
255 |
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"label.log_level_tooltip", startingLogLevel.toString()); |
256 |
75 |
logLevelLabel.setToolTipText(logLevelTooltip); |
257 |
75 |
logLevelCombo.setToolTipText(logLevelTooltip); |
258 |
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|
259 |
75 |
GridBagConstraints gbc = new GridBagConstraints(); |
260 |
75 |
gbc.gridx = 0; |
261 |
75 |
gbc.gridy = 0; |
262 |
75 |
gbc.gridwidth = 1; |
263 |
75 |
gbc.gridheight = 1; |
264 |
75 |
gbc.weightx = 0.1; |
265 |
75 |
southPanel.add(logLevelPanel, gbc); |
266 |
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|
267 |
75 |
gbc.gridx++; |
268 |
75 |
gbc.weightx = 0.8; |
269 |
75 |
gbc.fill = GridBagConstraints.HORIZONTAL; |
270 |
75 |
southPanel.add(clearButton, gbc); |
271 |
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|
272 |
75 |
gbc.gridx++; |
273 |
75 |
gbc.weightx = 0.1; |
274 |
75 |
gbc.fill = GridBagConstraints.NONE; |
275 |
75 |
southPanel.add(copyToClipboardButton, gbc); |
276 |
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|
277 |
75 |
southPanel.setVisible(true); |
278 |
75 |
frame.getContentPane().add(southPanel, BorderLayout.SOUTH); |
279 |
75 |
frame.setVisible(visible); |
280 |
75 |
updateConsole = visible; |
281 |
75 |
frame.addWindowListener(this); |
282 |
75 |
clearButton.addActionListener(this); |
283 |
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|
284 |
75 |
if (redirect) |
285 |
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{ |
286 |
75 |
redirectStreams(); |
287 |
|
} |
288 |
|
else |
289 |
|
{ |
290 |
0 |
unredirectStreams(); |
291 |
|
} |
292 |
75 |
quit = false; |
293 |
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|
294 |
|
|
295 |
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|
296 |
75 |
reader = new Thread(this); |
297 |
75 |
reader.setDaemon(true); |
298 |
75 |
reader.start(); |
299 |
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|
300 |
75 |
reader2 = new Thread(this); |
301 |
75 |
reader2.setDaemon(true); |
302 |
75 |
reader2.start(); |
303 |
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|
304 |
75 |
textAppender = new Thread(this); |
305 |
75 |
textAppender.setDaemon(true); |
306 |
75 |
textAppender.start(); |
307 |
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|
308 |
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|
309 |
75 |
frame.setIconImages(ChannelProperties.getIconList()); |
310 |
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} |
311 |
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|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
312 |
75 |
private void setChosenLogLevelCombo()... |
313 |
|
{ |
314 |
75 |
setChosenLogLevelCombo(startingLogLevel); |
315 |
|
} |
316 |
|
|
|
|
| 12.5% |
Uncovered Elements: 21 (24) |
Complexity: 7 |
Complexity Density: 0.5 |
|
317 |
75 |
private void setChosenLogLevelCombo(LogLevel setLogLevel)... |
318 |
|
{ |
319 |
75 |
logLevelCombo.setSelectedItem(setLogLevel); |
320 |
75 |
if (!logLevelCombo.getSelectedItem().equals(setLogLevel)) |
321 |
|
{ |
322 |
|
|
323 |
0 |
if (setLogLevel != null && setLogLevel instanceof LogLevel) |
324 |
|
{ |
325 |
|
|
326 |
0 |
boolean added = false; |
327 |
0 |
for (int i = 0; i < logLevelCombo.getItemCount(); i++) |
328 |
|
{ |
329 |
0 |
LogLevel l = logLevelCombo.getItemAt(i); |
330 |
0 |
if (l.compareTo(setLogLevel) >= 0) |
331 |
|
{ |
332 |
0 |
logLevelCombo.insertItemAt(setLogLevel, i); |
333 |
0 |
added = true; |
334 |
0 |
break; |
335 |
|
} |
336 |
|
} |
337 |
0 |
if (!added) |
338 |
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|
339 |
|
{ |
340 |
0 |
logLevelCombo.addItem(setLogLevel); |
341 |
|
} |
342 |
0 |
logLevelCombo.setSelectedItem(setLogLevel); |
343 |
|
} |
344 |
|
else |
345 |
|
{ |
346 |
0 |
logLevelCombo.setSelectedItem(LogLevel.INFO); |
347 |
|
} |
348 |
|
} |
349 |
|
} |
350 |
|
|
|
|
| 0% |
Uncovered Elements: 4 (4) |
Complexity: 1 |
Complexity Density: 0.25 |
|
351 |
0 |
private void copyConsoleTextToClipboard()... |
352 |
|
{ |
353 |
0 |
String consoleText = textArea.getText(); |
354 |
0 |
StringSelection consoleTextSelection = new StringSelection(consoleText); |
355 |
0 |
Clipboard cb = Toolkit.getDefaultToolkit().getSystemClipboard(); |
356 |
0 |
cb.setContents(consoleTextSelection, null); |
357 |
|
} |
358 |
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|
359 |
|
PipedOutputStream pout = null, perr = null; |
360 |
|
|
|
|
| 47.1% |
Uncovered Elements: 9 (17) |
Complexity: 6 |
Complexity Density: 0.4 |
|
361 |
75 |
public void redirectStreams()... |
362 |
|
{ |
363 |
75 |
if (pout == null) |
364 |
|
{ |
365 |
75 |
try |
366 |
|
{ |
367 |
75 |
pout = new PipedOutputStream(this.pin); |
368 |
75 |
System.setOut(new PrintStream(pout, true)); |
369 |
|
} catch (java.io.IOException io) |
370 |
|
{ |
371 |
0 |
textArea.append("Couldn't redirect STDOUT to this console\n" |
372 |
|
+ io.getMessage()); |
373 |
0 |
io.printStackTrace(stderr); |
374 |
|
} catch (SecurityException se) |
375 |
|
{ |
376 |
0 |
textArea.append("Couldn't redirect STDOUT to this console\n" |
377 |
|
+ se.getMessage()); |
378 |
0 |
se.printStackTrace(stderr); |
379 |
|
} |
380 |
|
|
381 |
75 |
try |
382 |
|
{ |
383 |
75 |
perr = new PipedOutputStream(this.pin2); |
384 |
75 |
System.setErr(new PrintStream(perr, true)); |
385 |
|
} catch (java.io.IOException io) |
386 |
|
{ |
387 |
0 |
textArea.append("Couldn't redirect STDERR to this console\n" |
388 |
|
+ io.getMessage()); |
389 |
0 |
io.printStackTrace(stderr); |
390 |
|
} catch (SecurityException se) |
391 |
|
{ |
392 |
0 |
textArea.append("Couldn't redirect STDERR to this console\n" |
393 |
|
+ se.getMessage()); |
394 |
0 |
se.printStackTrace(stderr); |
395 |
|
} |
396 |
|
} |
397 |
|
} |
398 |
|
|
|
|
| 60.9% |
Uncovered Elements: 9 (23) |
Complexity: 6 |
Complexity Density: 0.29 |
|
399 |
75 |
public void unredirectStreams()... |
400 |
|
{ |
401 |
75 |
if (pout != null) |
402 |
|
{ |
403 |
75 |
try |
404 |
|
{ |
405 |
75 |
System.setOut(stdout); |
406 |
75 |
pout.flush(); |
407 |
75 |
pout.close(); |
408 |
75 |
pin = new PipedInputStream(); |
409 |
75 |
pout = null; |
410 |
|
} catch (java.io.IOException io) |
411 |
|
{ |
412 |
0 |
textArea.append("Couldn't unredirect STDOUT to this console\n" |
413 |
|
+ io.getMessage()); |
414 |
0 |
io.printStackTrace(stderr); |
415 |
|
} catch (SecurityException se) |
416 |
|
{ |
417 |
0 |
textArea.append("Couldn't unredirect STDOUT to this console\n" |
418 |
|
+ se.getMessage()); |
419 |
0 |
se.printStackTrace(stderr); |
420 |
|
} |
421 |
|
|
422 |
75 |
try |
423 |
|
{ |
424 |
75 |
System.setErr(stderr); |
425 |
75 |
perr.flush(); |
426 |
75 |
perr.close(); |
427 |
75 |
pin2 = new PipedInputStream(); |
428 |
75 |
perr = null; |
429 |
|
} catch (java.io.IOException io) |
430 |
|
{ |
431 |
0 |
textArea.append("Couldn't unredirect STDERR to this console\n" |
432 |
|
+ io.getMessage()); |
433 |
0 |
io.printStackTrace(stderr); |
434 |
|
} catch (SecurityException se) |
435 |
|
{ |
436 |
0 |
textArea.append("Couldn't unredirect STDERR to this console\n" |
437 |
|
+ se.getMessage()); |
438 |
0 |
se.printStackTrace(stderr); |
439 |
|
} |
440 |
|
} |
441 |
|
} |
442 |
|
|
|
|
| 0% |
Uncovered Elements: 12 (12) |
Complexity: 2 |
Complexity Density: 0.2 |
|
443 |
0 |
public void test()... |
444 |
|
{ |
445 |
|
|
446 |
|
|
447 |
|
|
448 |
|
|
449 |
0 |
jalview.bin.Console.outPrintln("Hello World 2"); |
450 |
0 |
jalview.bin.Console.outPrintln("All fonts available to Graphic2D:\n"); |
451 |
0 |
GraphicsEnvironment ge = GraphicsEnvironment |
452 |
|
.getLocalGraphicsEnvironment(); |
453 |
0 |
String[] fontNames = ge.getAvailableFontFamilyNames(); |
454 |
0 |
for (int n = 0; n < fontNames.length; n++) |
455 |
|
{ |
456 |
0 |
jalview.bin.Console.outPrintln(fontNames[n]); |
457 |
|
} |
458 |
|
|
459 |
|
|
460 |
|
|
461 |
|
|
462 |
0 |
jalview.bin.Console.outPrintln("\nLets throw an error on this console"); |
463 |
0 |
errorThrower = new Thread(this); |
464 |
0 |
errorThrower.setDaemon(true); |
465 |
0 |
errorThrower.start(); |
466 |
|
} |
467 |
|
|
|
|
| 66.7% |
Uncovered Elements: 4 (12) |
Complexity: 3 |
Complexity Density: 0.38 |
|
468 |
75 |
private JFrame initFrame(String string, int i, int j, int x, int y)... |
469 |
|
{ |
470 |
75 |
JFrame frame = new JFrame(string); |
471 |
75 |
frame.setName(string); |
472 |
75 |
if (x == -1) |
473 |
|
{ |
474 |
0 |
x = i / 2; |
475 |
|
} |
476 |
75 |
if (y == -1) |
477 |
|
{ |
478 |
0 |
y = j / 2; |
479 |
|
} |
480 |
75 |
frame.setBounds(x, y, i, j); |
481 |
75 |
return frame; |
482 |
|
} |
483 |
|
|
484 |
|
|
485 |
|
|
486 |
|
|
487 |
|
@param |
488 |
|
|
|
|
| 80.8% |
Uncovered Elements: 5 (26) |
Complexity: 9 |
Complexity Density: 0.56 |
|
489 |
75 |
public Console(Desktop desktop)... |
490 |
|
{ |
491 |
75 |
parent = desktop; |
492 |
|
|
493 |
75 |
Rectangle bounds = parent == null ? null |
494 |
|
: parent.getLastKnownDimensions("JAVA_CONSOLE_"); |
495 |
75 |
if (bounds != null) |
496 |
|
{ |
497 |
59 |
frame = initFrame( |
498 |
|
ChannelProperties.getProperty("app_name") + " Java Console", |
499 |
|
bounds.width, bounds.height, bounds.x, bounds.y); |
500 |
|
} |
501 |
16 |
else if (parent != null && parent.getWidth() > 0 |
502 |
|
&& parent.getHeight() > 0) |
503 |
|
{ |
504 |
0 |
frame = initFrame( |
505 |
|
ChannelProperties.getProperty("app_name") + " Java Console", |
506 |
|
parent.getWidth() / 2, parent.getHeight() / 4, parent.getX(), |
507 |
|
parent.getY()); |
508 |
|
} |
509 |
|
else |
510 |
|
{ |
511 |
16 |
frame = initFrame( |
512 |
|
ChannelProperties.getProperty("app_name") + " Java Console", |
513 |
|
MIN_WIDTH, MIN_HEIGHT, 10, 10); |
514 |
|
} |
515 |
75 |
frame.setMinimumSize(new Dimension(MIN_WIDTH, MIN_HEIGHT)); |
516 |
|
|
517 |
75 |
initConsole(false); |
518 |
75 |
LogLevel level = (LogLevel) logLevelCombo.getSelectedItem(); |
519 |
75 |
if (!Platform.isJS()) |
520 |
|
{ |
521 |
75 |
JalviewAppender jappender = new JalviewAppender(level); |
522 |
75 |
JalviewAppender.setTextArea(textArea); |
523 |
75 |
jappender.start(); |
524 |
75 |
if (jalview.bin.Console.log != null |
525 |
|
&& jalview.bin.Console.log instanceof JLoggerLog4j) |
526 |
|
{ |
527 |
75 |
JLoggerLog4j.addAppender(jalview.bin.Console.log, jappender); |
528 |
|
} |
529 |
|
} |
530 |
|
} |
531 |
|
|
|
|
| 25% |
Uncovered Elements: 12 (16) |
Complexity: 5 |
Complexity Density: 0.36 |
|
532 |
81 |
public synchronized void stopConsole()... |
533 |
|
{ |
534 |
81 |
quit = true; |
535 |
81 |
this.notifyAll(); |
536 |
|
|
537 |
|
|
538 |
|
|
539 |
|
|
540 |
|
|
541 |
81 |
if (pout != null) |
542 |
|
{ |
543 |
0 |
try |
544 |
|
{ |
545 |
0 |
reader.join(10); |
546 |
0 |
pin.close(); |
547 |
|
} catch (Exception e) |
548 |
|
{ |
549 |
0 |
jalview.bin.Console.debug("pin.close() error", e); |
550 |
|
} |
551 |
0 |
try |
552 |
|
{ |
553 |
0 |
reader2.join(10); |
554 |
0 |
pin2.close(); |
555 |
|
} catch (Exception e) |
556 |
|
{ |
557 |
0 |
jalview.bin.Console.debug("pin2.close() error", e); |
558 |
|
} |
559 |
0 |
try |
560 |
|
{ |
561 |
0 |
textAppender.join(10); |
562 |
|
} catch (Exception e) |
563 |
|
{ |
564 |
0 |
jalview.bin.Console.debug("textAppender.join(10) error", e); |
565 |
|
} |
566 |
|
} |
567 |
|
|
568 |
|
|
569 |
|
|
570 |
|
|
571 |
|
|
572 |
|
|
573 |
|
|
574 |
|
} |
575 |
|
|
|
|
| 0% |
Uncovered Elements: 2 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
576 |
0 |
@Override... |
577 |
|
public synchronized void windowClosed(WindowEvent evt) |
578 |
|
{ |
579 |
0 |
frame.setVisible(false); |
580 |
0 |
closeConsoleGui(); |
581 |
|
} |
582 |
|
|
|
|
| 0% |
Uncovered Elements: 6 (6) |
Complexity: 2 |
Complexity Density: 0.5 |
|
583 |
0 |
private void closeConsoleGui()... |
584 |
|
{ |
585 |
0 |
updateConsole = false; |
586 |
0 |
if (parent == null) |
587 |
|
{ |
588 |
|
|
589 |
0 |
stopConsole(); |
590 |
|
} |
591 |
|
else |
592 |
|
{ |
593 |
0 |
parent.showConsole(false); |
594 |
|
} |
595 |
|
} |
596 |
|
|
|
|
| 0% |
Uncovered Elements: 2 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
597 |
0 |
@Override... |
598 |
|
public synchronized void windowClosing(WindowEvent evt) |
599 |
|
{ |
600 |
0 |
frame.setVisible(false); |
601 |
0 |
closeConsoleGui(); |
602 |
|
|
603 |
|
|
604 |
|
} |
605 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
606 |
0 |
@Override... |
607 |
|
public synchronized void actionPerformed(ActionEvent evt) |
608 |
|
{ |
609 |
0 |
trimBuffer(true); |
610 |
|
|
611 |
|
} |
612 |
|
|
|
|
| 53.5% |
Uncovered Elements: 40 (86) |
Complexity: 24 |
Complexity Density: 0.44 |
|
613 |
225 |
@Override... |
614 |
|
public synchronized void run() |
615 |
|
{ |
616 |
225 |
try |
617 |
|
{ |
618 |
45734 |
while (Thread.currentThread() == reader) |
619 |
|
{ |
620 |
45576 |
if (pin == null || pin.available() == 0) |
621 |
|
{ |
622 |
45591 |
try |
623 |
|
{ |
624 |
45581 |
this.wait(100); |
625 |
|
} catch (InterruptedException ie) |
626 |
|
{ |
627 |
0 |
jalview.bin.Console.debug("pin.available() error", ie); |
628 |
|
} |
629 |
|
} |
630 |
|
|
631 |
45541 |
while (pin.available() != 0) |
632 |
|
{ |
633 |
5 |
String input = this.readLine(pin); |
634 |
5 |
stdout.print(input); |
635 |
5 |
long time = System.nanoTime(); |
636 |
5 |
appendToTextArea(input); |
637 |
|
|
638 |
|
|
639 |
|
|
640 |
|
} |
641 |
45552 |
if (quit) |
642 |
|
{ |
643 |
38 |
return; |
644 |
|
} |
645 |
|
} |
646 |
|
|
647 |
45695 |
while (Thread.currentThread() == reader2) |
648 |
|
{ |
649 |
45618 |
if (pin2.available() == 0) |
650 |
|
{ |
651 |
45638 |
try |
652 |
|
{ |
653 |
45629 |
this.wait(100); |
654 |
45581 |
if (pin2.available() == 0) |
655 |
|
{ |
656 |
45596 |
trimBuffer(false); |
657 |
|
} |
658 |
|
} catch (InterruptedException ie) |
659 |
|
{ |
660 |
0 |
jalview.bin.Console.debug("pin.available() error", ie); |
661 |
|
} |
662 |
|
} |
663 |
45581 |
while (pin2.available() != 0) |
664 |
|
{ |
665 |
0 |
String input = this.readLine(pin2); |
666 |
0 |
stderr.print(input); |
667 |
0 |
long time = System.nanoTime(); |
668 |
0 |
appendToTextArea(input); |
669 |
|
|
670 |
|
|
671 |
|
|
672 |
|
} |
673 |
45594 |
if (quit) |
674 |
|
{ |
675 |
38 |
return; |
676 |
|
} |
677 |
|
} |
678 |
45588 |
while (Thread.currentThread() == textAppender) |
679 |
|
{ |
680 |
45585 |
if (updateConsole) |
681 |
|
{ |
682 |
|
|
683 |
|
|
684 |
|
|
685 |
0 |
while (displayPipe.length() > 0) |
686 |
|
{ |
687 |
0 |
StringBuffer tmp = new StringBuffer(), replace; |
688 |
0 |
synchronized (displayPipe) |
689 |
|
{ |
690 |
0 |
replace = displayPipe; |
691 |
0 |
displayPipe = tmp; |
692 |
|
} |
693 |
|
|
694 |
0 |
SwingUtilities.invokeLater(new Runnable() |
695 |
|
{ |
|
|
| 0% |
Uncovered Elements: 2 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
696 |
0 |
public void run()... |
697 |
|
{ |
698 |
0 |
textArea.append(replace.toString()); |
699 |
0 |
trimBuffer(false); |
700 |
|
} |
701 |
|
}); |
702 |
|
} |
703 |
0 |
if (displayPipe.length() == 0) |
704 |
|
{ |
705 |
0 |
try |
706 |
|
{ |
707 |
0 |
this.wait(100); |
708 |
0 |
if (displayPipe.length() == 0) |
709 |
|
{ |
710 |
|
|
711 |
0 |
SwingUtilities.invokeLater(new Runnable() |
712 |
|
{ |
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
713 |
0 |
public void run()... |
714 |
|
{ |
715 |
0 |
trimBuffer(false); |
716 |
|
} |
717 |
|
}); |
718 |
|
} |
719 |
|
} catch (InterruptedException e) |
720 |
|
{ |
721 |
0 |
jalview.bin.Console.debug("displayPipe.length() error", e); |
722 |
|
} |
723 |
|
} |
724 |
|
} |
725 |
|
else |
726 |
|
{ |
727 |
45579 |
try |
728 |
|
{ |
729 |
45591 |
this.wait(100); |
730 |
|
} catch (InterruptedException e) |
731 |
|
{ |
732 |
0 |
jalview.bin.Console.debug("this.wait(100) error", e); |
733 |
|
} |
734 |
|
} |
735 |
45546 |
if (quit) |
736 |
|
{ |
737 |
38 |
return; |
738 |
|
} |
739 |
|
|
740 |
|
} |
741 |
|
} catch (Exception e) |
742 |
|
{ |
743 |
0 |
textArea.append("\nConsole reports an Internal error."); |
744 |
0 |
textArea.append("The error is: " + e.getMessage()); |
745 |
|
|
746 |
|
|
747 |
0 |
stderr.println( |
748 |
|
"Console reports an Internal error.\nThe error is: " + e); |
749 |
|
} |
750 |
|
|
751 |
|
|
752 |
0 |
if (Thread.currentThread() == errorThrower) |
753 |
|
{ |
754 |
0 |
try |
755 |
|
{ |
756 |
0 |
this.wait(1000); |
757 |
|
} catch (InterruptedException ie) |
758 |
|
{ |
759 |
0 |
jalview.bin.Console.debug("this.wait(1000) error", ie); |
760 |
|
} |
761 |
0 |
throw new NullPointerException( |
762 |
|
MessageManager.getString("exception.application_test_npe")); |
763 |
|
} |
764 |
|
} |
765 |
|
|
|
|
| 50% |
Uncovered Elements: 3 (6) |
Complexity: 2 |
Complexity Density: 0.5 |
|
766 |
5 |
private void appendToTextArea(final String input)... |
767 |
|
{ |
768 |
5 |
if (updateConsole == false) |
769 |
|
{ |
770 |
|
|
771 |
5 |
return; |
772 |
|
} |
773 |
0 |
long time = System.nanoTime(); |
774 |
0 |
javax.swing.SwingUtilities.invokeLater(new Runnable() |
775 |
|
{ |
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
776 |
0 |
@Override... |
777 |
|
public void run() |
778 |
|
{ |
779 |
0 |
displayPipe.append(input); |
780 |
|
} |
781 |
|
}); |
782 |
|
|
783 |
|
|
784 |
|
|
785 |
|
} |
786 |
|
|
787 |
|
private String header = null; |
788 |
|
|
789 |
|
private boolean updateConsole = false; |
790 |
|
|
|
|
| 33.3% |
Uncovered Elements: 14 (21) |
Complexity: 9 |
Complexity Density: 0.69 |
|
791 |
45580 |
private synchronized void trimBuffer(boolean clear)... |
792 |
|
{ |
793 |
45590 |
if (header == null && textArea.getLineCount() > 5) |
794 |
|
{ |
795 |
0 |
try |
796 |
|
{ |
797 |
0 |
header = textArea.getText(0, textArea.getLineStartOffset(5)) |
798 |
|
+ "\nTruncated...\n"; |
799 |
|
} catch (Exception e) |
800 |
|
{ |
801 |
0 |
jalview.bin.Console.warn("textArea Exception", e); |
802 |
|
} |
803 |
|
} |
804 |
|
|
805 |
45592 |
int tlength = textArea.getDocument().getLength(); |
806 |
45592 |
if (header != null) |
807 |
|
{ |
808 |
45593 |
if (clear || (tlength > byteslim)) |
809 |
|
{ |
810 |
0 |
try |
811 |
|
{ |
812 |
0 |
if (!clear) |
813 |
|
{ |
814 |
0 |
long time = System.nanoTime(); |
815 |
0 |
textArea.replaceRange(header, 0, tlength - bytescut); |
816 |
|
|
817 |
|
|
818 |
|
} |
819 |
|
else |
820 |
|
{ |
821 |
0 |
textArea.setText(header); |
822 |
|
} |
823 |
|
} catch (Exception e) |
824 |
|
{ |
825 |
0 |
jalview.bin.Console.warn("textArea Exception", e); |
826 |
|
} |
827 |
|
|
828 |
|
} |
829 |
|
} |
830 |
|
|
831 |
|
} |
832 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (14) |
Complexity: 5 |
Complexity Density: 0.5 |
|
833 |
5 |
public synchronized String readLine(PipedInputStream in)... |
834 |
|
throws IOException |
835 |
|
{ |
836 |
5 |
String input = ""; |
837 |
5 |
int lp = -1; |
838 |
5 |
do |
839 |
|
{ |
840 |
6 |
int available = in.available(); |
841 |
6 |
if (available == 0) |
842 |
|
{ |
843 |
1 |
break; |
844 |
|
} |
845 |
5 |
byte b[] = new byte[available]; |
846 |
5 |
in.read(b); |
847 |
5 |
input = input + new String(b, 0, b.length); |
848 |
|
|
849 |
|
|
850 |
|
|
851 |
|
|
852 |
|
|
853 |
5 |
} while (!input.endsWith("\n") && !input.endsWith("\r\n") && !quit); |
854 |
5 |
return input; |
855 |
|
} |
856 |
|
|
857 |
|
|
858 |
|
|
859 |
|
@param |
860 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
861 |
0 |
public static void main(String[] arg)... |
862 |
|
{ |
863 |
0 |
new Console().test(); |
864 |
|
|
865 |
|
} |
866 |
|
|
|
|
| 57.1% |
Uncovered Elements: 6 (14) |
Complexity: 3 |
Complexity Density: 0.3 |
|
867 |
75 |
public void setVisible(boolean selected)... |
868 |
|
{ |
869 |
75 |
frame.setVisible(selected); |
870 |
75 |
if (selected == true) |
871 |
|
{ |
872 |
0 |
setChosenLogLevelCombo(); |
873 |
0 |
redirectStreams(); |
874 |
0 |
updateConsole = true; |
875 |
0 |
frame.toFront(); |
876 |
|
} |
877 |
|
else |
878 |
|
{ |
879 |
|
|
880 |
75 |
if (jalview.bin.Console.log != null) |
881 |
|
{ |
882 |
75 |
jalview.bin.Console.log.setLevel(startingLogLevel); |
883 |
|
} |
884 |
|
|
885 |
75 |
unredirectStreams(); |
886 |
75 |
updateConsole = false; |
887 |
|
} |
888 |
|
} |
889 |
|
|
|
|
| 60% |
Uncovered Elements: 2 (5) |
Complexity: 2 |
Complexity Density: 0.67 |
|
890 |
81 |
public Rectangle getBounds()... |
891 |
|
{ |
892 |
81 |
if (frame != null) |
893 |
|
{ |
894 |
81 |
return frame.getBounds(); |
895 |
|
} |
896 |
0 |
return null; |
897 |
|
} |
898 |
|
|
899 |
|
|
900 |
|
|
901 |
|
|
902 |
|
@param |
903 |
|
|
|
|
| 66.7% |
Uncovered Elements: 2 (6) |
Complexity: 2 |
Complexity Density: 0.5 |
|
904 |
75 |
public void setHeader(String string)... |
905 |
|
{ |
906 |
75 |
header = string; |
907 |
75 |
if (header.charAt(header.length() - 1) != '\n') |
908 |
|
{ |
909 |
0 |
header += "\n"; |
910 |
|
} |
911 |
75 |
textArea.insert(header, 0); |
912 |
|
} |
913 |
|
|
914 |
|
|
915 |
|
|
916 |
|
|
917 |
|
@return |
918 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
919 |
0 |
public String getHeader()... |
920 |
|
{ |
921 |
0 |
return header; |
922 |
|
} |
923 |
|
} |