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jalview.io.DataSourceType
jalview.io.DataSourceType
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1.0100%
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jalview.xml.binding.jalview.SequenceType
jalview.xml.binding.jalview.SequenceType
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1.0100%
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jalview.xml.binding.jalview.Annotation.ThresholdLine
jalview.xml.binding.jalview.Annotation.ThresholdLine
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1.0100%
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jalview.renderer.ScaleRenderer.ScaleMark
jalview.renderer.ScaleRenderer.ScaleMark
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1.0100%
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jalview.ws.WSClient
jalview.ws.WSClient
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1.0100%
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jalview.project.Jalview2XML.JvAnnotRow
jalview.project.Jalview2XML.JvAnnotRow
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jalview.datamodel.ResidueCount.SymbolCounts
jalview.datamodel.ResidueCount.SymbolCounts
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jalview.xml.binding.jalview.AnnotationElement
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jalview.xml.binding.jalview.SequenceSet
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0.894736889.5%
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jalview.xml.binding.jalview.JalviewModel.JGroup
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jalview.analysis.Conservation
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jalview.xml.binding.jalview.JalviewModel.Viewport
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jalview.viewmodel.styles.ViewStyle
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jalview.xml.binding.jalview.Annotation
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0.809090980.9%
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jalview.util.LinkedIdentityHashSet
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jalview.xml.binding.jalview.JalviewModel.JSeq
jalview.xml.binding.jalview.JalviewModel.JSeq
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0.7575%
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jalview.io.BackupFilesPresetEntry
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0.735294173.5%
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jalview.datamodel.Profiles
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jalview.gui.FeatureRenderer
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jalview.util.LinkedIdentityHashSet.IdentityWrapper
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jalview.ws.SequenceFetcher
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jalview.util.ParseHtmlBodyAndLinks
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jalview.renderer.ScaleRenderer
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jalview.gui.JalviewChangeSupport
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jalview.viewmodel.ViewportProperties
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jalview.xml.binding.jalview.VAMSAS
jalview.xml.binding.jalview.VAMSAS
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jalview.datamodel.Profile
jalview.datamodel.Profile
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jalview.schemes.TaylorColourScheme
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jalview.schemes.FlowerColourScheme
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jalview.schemes.ZappoColourScheme
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0.550%
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jalview.schemes.NucleotideAmbiguityColourScheme
jalview.schemes.NucleotideAmbiguityColourScheme
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0.550%
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jalview.schemes.PurinePyrimidineColourScheme
jalview.schemes.PurinePyrimidineColourScheme
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0.550%
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jalview.schemes.NucleotideColourScheme
jalview.schemes.NucleotideColourScheme
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0.550%
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jalview.schemes.BlossomColourScheme
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0.550%
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jalview.schemes.SunsetColourScheme
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0.550%
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jalview.schemes.OceanColourScheme
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0.550%
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jalview.util.MessageManager
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0.4761904847.6%
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jalview.io.FileLoader
jalview.io.FileLoader
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0.4648829446.5%
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jalview.ws.jws2.MsaWSClient
jalview.ws.jws2.MsaWSClient
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0.4429530244.3%
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jalview.datamodel.HiddenCursorPosition
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jalview.gui.SequenceRenderer
jalview.gui.SequenceRenderer
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jalview.util.ShortcutKeyMaskExWrapper11
jalview.util.ShortcutKeyMaskExWrapper11
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jalview.io.FileFormats
jalview.io.FileFormats
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jalview.ws.dbsources.EmblSource
jalview.ws.dbsources.EmblSource
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jalview.schemes.HydrophobicColourScheme
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jalview.schemes.HelixColourScheme
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0.440%
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jalview.schemes.TurnColourScheme
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jalview.schemes.StrandColourScheme
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jalview.schemes.FollowerColourScheme
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0.440%
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jalview.schemes.BuriedColourScheme
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jalview.io.AlignFile
jalview.io.AlignFile
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0.36986337%
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jalview.io.BackupFilenameParts
jalview.io.BackupFilenameParts
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jalview.renderer.ResidueShader
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jalview.io.FastaFile
jalview.io.FastaFile
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0.3603603536%
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jalview.renderer.ResidueColourFinder
jalview.renderer.ResidueColourFinder
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0.3571428735.7%
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jalview.gui.AlignViewport
jalview.gui.AlignViewport
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jalview.util.Comparison
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0.350393735%
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jalview.analysis.AAFrequency
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0.3481012634.8%
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jalview.renderer.AnnotationRenderer
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jalview.project.Jalview2XML
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jalview.ws.rest.RestServiceDescription
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jalview.io.IdentifyFile
jalview.io.IdentifyFile
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0.3142857331.4%
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jalview.datamodel.AlignmentAnnotation
jalview.datamodel.AlignmentAnnotation
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jalview.viewmodel.ViewportRanges
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jalview.io.BackupFiles
jalview.io.BackupFiles
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jalview.ws.jws2.SequenceAnnotationWSClient
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jalview.ws.dbsources.EmblCdsSource
jalview.ws.dbsources.EmblCdsSource
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0.285714328.6%
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jalview.datamodel.Annotation
jalview.datamodel.Annotation
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jalview.datamodel.GraphLine
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jalview.io.FileParse
jalview.io.FileParse
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jalview.gui.IdCanvas
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jalview.ws.jws2.JabaPreset
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jalview.io.AnnotationFile
jalview.io.AnnotationFile
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0.2709030227.1%
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jalview.datamodel.Sequence
jalview.datamodel.Sequence
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jalview.datamodel.Alignment
jalview.datamodel.Alignment
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jalview.gui.JvSwingUtils
jalview.gui.JvSwingUtils
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0.258503425.9%
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jalview.gui.PaintRefresher
jalview.gui.PaintRefresher
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0.253521125.4%
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jalview.ws.jws2.jabaws2.Jws2Instance
jalview.ws.jws2.jabaws2.Jws2Instance
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0.2528735725.3%
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jalview.gui.IdwidthAdjuster
jalview.gui.IdwidthAdjuster
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0.2525%
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jalview.renderer.AnnotationRendererFactory
jalview.renderer.AnnotationRendererFactory
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jalview.ws.uimodel.AlignAnalysisUIText
jalview.ws.uimodel.AlignAnalysisUIText
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jalview.ws.rest.params.Alignment
jalview.ws.rest.params.Alignment
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jalview.util.ColorUtils
jalview.util.ColorUtils
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jalview.ws.jws2.Jws2Discoverer
jalview.ws.jws2.Jws2Discoverer
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jalview.datamodel.SequenceCursor
jalview.datamodel.SequenceCursor
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jalview.ws.jws2.Jws2Client
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jalview.gui.ScalePanel
jalview.gui.ScalePanel
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0.2187521.9%
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0.2056074720.6%
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jalview.datamodel.SequenceGroup
jalview.datamodel.SequenceGroup
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0.20423620.4%
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jalview.analysis.AnnotationSorter
jalview.analysis.AnnotationSorter
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0.1970443319.7%
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jalview.schemes.ColourSchemeProperty
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0.1944444519.4%
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jalview.gui.AnnotationLabels
jalview.gui.AnnotationLabels
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jalview.util.QuickSort
jalview.util.QuickSort
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0.1877022718.8%
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jalview.schemes.IdColourScheme
jalview.schemes.IdColourScheme
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jalview.gui.SeqCanvas
jalview.gui.SeqCanvas
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jalview.ws.jws1.WS1Client
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0.1616%
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jalview.gui.Desktop.MyDesktopManager
jalview.gui.Desktop.MyDesktopManager
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jalview.util.Format
jalview.util.Format
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0.1490683314.9%
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jalview.schemes.TCoffeeColourScheme
jalview.schemes.TCoffeeColourScheme
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0.1475409914.8%
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jalview.gui.AlignFrame
jalview.gui.AlignFrame
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0.1461841614.6%
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jalview.gui.Desktop.MyDesktopPane
jalview.gui.Desktop.MyDesktopPane
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0.1428571514.3%
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jalview.bin.Console
jalview.bin.Console
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0.1330049213.3%
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jalview.ws.rest.params.SeqGroupIndexVector
jalview.ws.rest.params.SeqGroupIndexVector
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jalview.util.StringUtils
jalview.util.StringUtils
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0.1230769212.3%
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jalview.datamodel.features.SequenceFeatures
jalview.datamodel.features.SequenceFeatures
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0.1210191112.1%
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jalview.io.FormatAdapter
jalview.io.FormatAdapter
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0.1212%
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jalview.gui.AnnotationPanel
jalview.gui.AnnotationPanel
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0.1176470611.8%
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jalview.schemes.Blosum62ColourScheme
jalview.schemes.Blosum62ColourScheme
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0.1176470611.8%
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jalview.analysis.scoremodels.ScoreModels
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jalview.ws.rest.RestClient
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0.11538461611.5%
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jalview.util.ShortcutKeyMaskExWrapper
jalview.util.ShortcutKeyMaskExWrapper
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0.1111111111.1%
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jalview.io.FileFormat
jalview.io.FileFormat
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0.1085271310.9%
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jalview.ws.rest.params.AnnotationFile
jalview.ws.rest.params.AnnotationFile
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0.10256410410.3%
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jalview.io.AppletFormatAdapter
jalview.io.AppletFormatAdapter
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0.0993788849.9%
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jalview.gui.Desktop
jalview.gui.Desktop
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0.099088849.9%
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jalview.workers.AlignCalcWorker
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0.09523819.5%
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jalview.log.JLogger
jalview.log.JLogger
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0.087912098.8%
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jalview.ws.dbsources.Xfam
jalview.ws.dbsources.Xfam
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0.086956528.7%
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jalview.ext.ensembl.EnsemblSequenceFetcher
jalview.ext.ensembl.EnsemblSequenceFetcher
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0.0833333368.3%
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jalview.gui.Console
jalview.gui.Console
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0.082568818.3%
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jalview.schemes.RNAHelicesColour
jalview.schemes.RNAHelicesColour
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0.082191788.2%
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jalview.gui.ProgressBar
jalview.gui.ProgressBar
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0.081300818.1%
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jalview.datamodel.ColumnSelection.IntList
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0.074766357.5%
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jalview.schemes.ColourSchemes
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0.070175447%
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jalview.gui.IdPanel
jalview.gui.IdPanel
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0.067264576.7%
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jalview.schemes.PIDColourScheme
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0.066666676.7%
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jalview.analysis.CrossRef
jalview.analysis.CrossRef
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0.063524596.4%
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jalview.structure.StructureSelectionManager
jalview.structure.StructureSelectionManager
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0.062666676.3%
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jalview.analysis.scoremodels.ScoreMatrix
jalview.analysis.scoremodels.ScoreMatrix
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0.0617283966.2%
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ext.vamsas.ServiceHandle
ext.vamsas.ServiceHandle
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0.061224496.1%
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jalview.gui.ViewSelectionMenu
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0.059405945.9%
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jalview.ws.seqfetcher.ASequenceFetcher
jalview.ws.seqfetcher.ASequenceFetcher
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0.0577777775.8%
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jalview.util.Platform
jalview.util.Platform
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0.0566037745.7%
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jalview.ws.seqfetcher.DbSourceProxyImpl
jalview.ws.seqfetcher.DbSourceProxyImpl
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0.0540540555.4%
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jalview.ws.jws1.Discoverer
jalview.ws.jws1.Discoverer
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0.0512820525.1%
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jalview.analysis.GeneticCodes
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0.0496894425%
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jalview.bin.Cache
jalview.bin.Cache
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0.0482093654.8%
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jalview.datamodel.SecondaryStructureCount
jalview.datamodel.SecondaryStructureCount
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0.0468754.7%
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jalview.util.DBRefUtils
jalview.util.DBRefUtils
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0.045317224.5%
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jalview.xml.binding.jalview.ObjectFactory
jalview.xml.binding.jalview.ObjectFactory
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0.0427350444.3%
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jalview.ws.dbsources.Pdb
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0.042553194.3%
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jalview.ws.jws2.JabaParamStore
jalview.ws.jws2.JabaParamStore
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0.0416666684.2%
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jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
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0.037735853.8%
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jalview.ws.jws1.JPredClient
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0.0310559013.1%
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jalview.datamodel.HiddenSequences
jalview.datamodel.HiddenSequences
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0.027397262.7%
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jalview.datamodel.ColumnSelection
jalview.datamodel.ColumnSelection
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0.017182131.7%
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jalview.schemes.ClustalxColourScheme
jalview.schemes.ClustalxColourScheme
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0.0169491531.7%
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jalview.datamodel.HiddenColumnsCursor
jalview.datamodel.HiddenColumnsCursor
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0.0156251.6%
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jalview.ws.dbsources.Uniprot
jalview.ws.dbsources.Uniprot
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0.0155642021.6%
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jalview.controller.AlignViewController
jalview.controller.AlignViewController
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0.0136518771.4%
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jalview.datamodel.SearchResults
jalview.datamodel.SearchResults
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0.0128205131.3%
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jalview.analysis.AlignSeq
jalview.analysis.AlignSeq
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0.0128205131.3%
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jalview.gui.SeqPanel
jalview.gui.SeqPanel
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0.0125412541.3%
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jalview.analysis.AlignmentUtils
jalview.analysis.AlignmentUtils
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0.0124269011.2%
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jalview.io.SequenceAnnotationReport
jalview.io.SequenceAnnotationReport
|
0.0122699381.2%
|
|
|
jalview.bin.Jalview
jalview.bin.Jalview
|
0.0117328521.2%
|
|
|
jalview.util.HttpUtils
jalview.util.HttpUtils
|
0.01169590651.2%
|
|
|
jalview.gui.SequenceFetcher
jalview.gui.SequenceFetcher
|
0.0089285720.9%
|
|
|
jalview.bin.argparser.BootstrapArgs
jalview.bin.argparser.BootstrapArgs
|
0.0082644620.8%
|
|
|
jalview.ext.ensembl.EnsemblGene
jalview.ext.ensembl.EnsemblGene
|
0.0081632650.8%
|
|
|
jalview.renderer.seqfeatures.FeatureRenderer
jalview.renderer.seqfeatures.FeatureRenderer
|
0.007547170.8%
|
|
|
jalview.gui.QuitHandler
jalview.gui.QuitHandler
|
0.00722021660.7%
|
|
