Class | Line # | Actions | |||
---|---|---|---|---|---|
JabaPreset | 32 | 13 | 10 | 0.409090940.9% |
Class JabaPreset |
Line # 32 |
13 |
10 |
0.409090940.9% |
---|---|---|---|---|
JabaPreset(Jws2Instance,Preset) JabaPreset(Jws2Instance,Preset) | 3838 | 2.02 | 1.01 | 1.0 1.0100% |
getName() : String getName() : String | 4444 | 1.01 | 1.01 | 1.0 1.0100% |
getDescription() : String getDescription() : String | 5050 | 1.01 | 1.01 | 1.0 1.0100% |
getApplicableUrls() : String[] getApplicableUrls() : String[] | 5656 | 1.01 | 1.01 | 0.0 0.00% |
getSourceFile() : String getSourceFile() : String | 6262 | 1.01 | 1.01 | 0.0 0.00% |
isModifiable() : boolean isModifiable() : boolean | 6868 | 1.01 | 1.01 | 1.0 1.0100% |
setSourceFile(String) : void setSourceFile(String) : void | 7474 | 1.01 | 1.01 | 0.0 0.00% |
getArguments() : List<ArgumentI> getArguments() : List<ArgumentI> | 8282 | 4.04 | 2.02 | 0.0 0.00% |
setArguments(List<ArgumentI>) : void setArguments(List<ArgumentI>) : void | 9797 | 1.01 | 1.01 | 0.0 0.00% |
0.4090909
|
jalview.schemes.ColourSchemesTest.testRegisterColourSchemejalview.schemes.ColourSchemesTest.testRegisterColourScheme | 1PASS | ||
0.4090909
|
jalview.bin.CommandsTest.allLinkedIdsTestjalview.bin.CommandsTest.allLinkedIdsTest | 1PASS | ||
0.4090909
|
jalview.io.CrossRef2xmlTests.openCrossrefsForEnsemblTwicejalview.io.CrossRef2xmlTests.openCrossrefsForEnsemblTwice | 1PASS | ||
0.4090909
|
jalview.bin.CommandsTest.allLinkedIdsTestjalview.bin.CommandsTest.allLinkedIdsTest | 1PASS | ||
0.4090909
|
jalview.bin.CommandsTest.allLinkedIdsTestjalview.bin.CommandsTest.allLinkedIdsTest | 1PASS | ||
0.4090909
|
jalview.bin.CommandsTest.allLinkedIdsTestjalview.bin.CommandsTest.allLinkedIdsTest | 1PASS | ||
0.4090909
|
jalview.gui.SeqPanelTest.testFindMousePosition_wrapped_annotationsjalview.gui.SeqPanelTest.testFindMousePosition_wrapped_annotations | 1PASS | ||
0.4090909
|
jalview.bin.CommandsTest.commandsOpenTestjalview.bin.CommandsTest.commandsOpenTest | 1PASS | ||
0.4090909
|
jalview.bin.CommandsTest.argFilesGlobAndSubstitutionsTestjalview.bin.CommandsTest.argFilesGlobAndSubstitutionsTest | 1PASS | ||
0.4090909
|
jalview.gui.ScalePanelTest.testPreventNegativeStartColumnjalview.gui.ScalePanelTest.testPreventNegativeStartColumn | 1PASS | ||
0.4090909
|
jalview.gui.StructureChooserTest.openStructureFileForSequenceTestjalview.gui.StructureChooserTest.openStructureFileForSequenceTest | 1PASS | ||
0.4090909
|
jalview.project.Jalview2xmlTests.gatherViewsHerejalview.project.Jalview2xmlTests.gatherViewsHere | 1PASS | ||
0.4090909
|
jalview.gui.StructureChooserTest.openStructureFileForSequenceTestjalview.gui.StructureChooserTest.openStructureFileForSequenceTest | 1PASS | ||
0.4090909
|
jalview.gui.StructureChooserTest.openStructureFileForSequenceTestjalview.gui.StructureChooserTest.openStructureFileForSequenceTest | 1PASS | ||
0.4090909
|
jalview.bin.CommandsTest.allLinkedIdsTestjalview.bin.CommandsTest.allLinkedIdsTest | 1PASS | ||
0.4090909
|
jalview.bin.CommandsTest.allLinkedIdsTestjalview.bin.CommandsTest.allLinkedIdsTest | 1PASS | ||
0.4090909
|
jalview.bin.CommandsTest2.structureOpeningArgsTestjalview.bin.CommandsTest2.structureOpeningArgsTest | 1PASS | ||
0.4090909
|
jalview.gui.StructureChooserTest.openStructureFileForSequenceTestjalview.gui.StructureChooserTest.openStructureFileForSequenceTest | 1PASS | ||
0.4090909
|
jalview.gui.StructureChooserTest.openStructureFileForSequenceTestjalview.gui.StructureChooserTest.openStructureFileForSequenceTest | 1PASS | ||
0.4090909
|
jalview.bin.CommandsTest.commandsOpenTestjalview.bin.CommandsTest.commandsOpenTest | 1PASS | ||
0.4090909
|
jalview.bin.CommandsTest.allLinkedIdsTestjalview.bin.CommandsTest.allLinkedIdsTest | 1PASS | ||
0.4090909
|
jalview.gui.ScalePanelTest.testSelectColumns_withHiddenjalview.gui.ScalePanelTest.testSelectColumns_withHidden | 1PASS | ||
0.4090909
|
jalview.bin.CommandsTest.argFilesGlobAndSubstitutionsTestjalview.bin.CommandsTest.argFilesGlobAndSubstitutionsTest | 1PASS | ||
0.4090909
|
jalview.bin.CommandsTest.argFilesGlobAndSubstitutionsTestjalview.bin.CommandsTest.argFilesGlobAndSubstitutionsTest | 1PASS | ||
0.4090909
|
jalview.gui.StructureChooserTest.openStructureFileForSequenceTestjalview.gui.StructureChooserTest.openStructureFileForSequenceTest | 1PASS | ||
0.4090909
|
jalview.bin.CommandsTest.allLinkedIdsTestjalview.bin.CommandsTest.allLinkedIdsTest | 1PASS | ||
0.4090909
|
jalview.bin.CommandsTest.allLinkedIdsTestjalview.bin.CommandsTest.allLinkedIdsTest | 1PASS | ||
0.4090909
|
jalview.bin.CommandsTest2.structureOpeningArgsTestjalview.bin.CommandsTest2.structureOpeningArgsTest | 1PASS | ||
0.4090909
|
jalview.bin.CommandsTest.argFilesGlobAndSubstitutionsTestjalview.bin.CommandsTest.argFilesGlobAndSubstitutionsTest | 1PASS | ||
0.4090909
|
jalview.bin.CommandsTest.commandsOpenTestjalview.bin.CommandsTest.commandsOpenTest | 1PASS | ||
0.4090909
|
jalview.bin.CommandsTest.commandsOpenTestjalview.bin.CommandsTest.commandsOpenTest | 1PASS | ||
0.4090909
|
jalview.bin.CommandsTest.argFilesGlobAndSubstitutionsTestjalview.bin.CommandsTest.argFilesGlobAndSubstitutionsTest | 1PASS | ||
0.27272728
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverNoOverviewjalview.project.Jalview2xmlTests.testStoreAndRecoverNoOverview | 1PASS | ||
0.27272728
|
jalview.io.FeaturesFileTest.testPrintGffFormatjalview.io.FeaturesFileTest.testPrintGffFormat | 1PASS | ||
0.27272728
|
jalview.io.vcf.VCFLoaderTest.testDoLoad_vepCsqjalview.io.vcf.VCFLoaderTest.testDoLoad_vepCsq | 1PASS | ||
0.27272728
|
jalview.gui.AnnotationChooserTest.testSelectType_hideForAlljalview.gui.AnnotationChooserTest.testSelectType_hideForAll | 1PASS | ||
0.27272728
|
jalview.io.cache.JvCacheableInputBoxTest.updateCacheTestjalview.io.cache.JvCacheableInputBoxTest.updateCacheTest | 1PASS | ||
0.27272728
|
jalview.project.Jalview2xmlTests.testPAEsaveRestorejalview.project.Jalview2xmlTests.testPAEsaveRestore | 1PASS | ||
0.27272728
|
jalview.util.MappingUtilsTest.testContainsjalview.util.MappingUtilsTest.testContains | 1PASS | ||
0.27272728
|
jalview.util.MappingUtilsTest.testBuildSearchResultsjalview.util.MappingUtilsTest.testBuildSearchResults | 1PASS | ||
0.27272728
|
jalview.gui.SeqPanelTest.testSetStatusReturnsNearestResiduePositionjalview.gui.SeqPanelTest.testSetStatusReturnsNearestResiduePosition | 1PASS | ||
0.27272728
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverReferenceSeqSettingsjalview.project.Jalview2xmlTests.testStoreAndRecoverReferenceSeqSettings | 1PASS | ||
0.27272728
|
jalview.schemes.HelixColourSchemeTest.testFindColourjalview.schemes.HelixColourSchemeTest.testFindColour | 1PASS | ||
0.27272728
|
jalview.schemes.ClustalxColourSchemeTest.testFindColour_ignoreGapsjalview.schemes.ClustalxColourSchemeTest.testFindColour_ignoreGaps | 1PASS | ||
0.27272728
|
jalview.datamodel.AlignmentTest.testGetWidthjalview.datamodel.AlignmentTest.testGetWidth | 1PASS | ||
0.27272728
|
jalview.project.Jalview2xmlTests.testSaveLoadFeatureColoursAndFiltersjalview.project.Jalview2xmlTests.testSaveLoadFeatureColoursAndFilters | 1PASS | ||
0.27272728
|
jalview.bin.CommandsTest2.structureOpeningArgsTestjalview.bin.CommandsTest2.structureOpeningArgsTest | 1PASS | ||
0.27272728
|
jalview.datamodel.AlignmentTest.testAlignAs_proteinAsCdnajalview.datamodel.AlignmentTest.testAlignAs_proteinAsCdna | 1PASS | ||
0.27272728
|
jalview.schemes.FeatureColourTest.testGetColor_aboveBelowThresholdjalview.schemes.FeatureColourTest.testGetColor_aboveBelowThreshold | 1PASS | ||
0.27272728
|
jalview.util.MappingUtilsTest.testMapEditCommandjalview.util.MappingUtilsTest.testMapEditCommand | 1PASS | ||
0.27272728
|
jalview.gui.StructureChooserTest.displayTDBQueryTestjalview.gui.StructureChooserTest.displayTDBQueryTest | 1PASS | ||
0.27272728
|
jalview.datamodel.AlignedCodonFrameTest.testMarkMappedRegionjalview.datamodel.AlignedCodonFrameTest.testMarkMappedRegion | 1PASS | ||
0.27272728
|
jalview.datamodel.AlignmentTest.testAssertDatasetIsNormalisedjalview.datamodel.AlignmentTest.testAssertDatasetIsNormalised | 1PASS | ||
0.27272728
|
jalview.math.MatrixTest.testFindMinMax_timingjalview.math.MatrixTest.testFindMinMax_timing | 1PASS | ||
0.27272728
|
jalview.gui.SeqPanelTest.testFindMousePosition_wrapped_scaleAbovejalview.gui.SeqPanelTest.testFindMousePosition_wrapped_scaleAbove | 1PASS | ||
0.27272728
|
jalview.bin.CommandsTest.structureImageAnnotationsOutputTestjalview.bin.CommandsTest.structureImageAnnotationsOutputTest | 1PASS | ||
0.27272728
|
jalview.bin.CommandsTest2.structureOpeningArgsTestjalview.bin.CommandsTest2.structureOpeningArgsTest | 1PASS | ||
0.27272728
|
jalview.gui.AnnotationChooserTest.testBuildApplyToOptionsPanel_noSelectionGroupjalview.gui.AnnotationChooserTest.testBuildApplyToOptionsPanel_noSelectionGroup | 1PASS | ||
0.27272728
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverColourThresholdsjalview.project.Jalview2xmlTests.testStoreAndRecoverColourThresholds | 1PASS | ||
0.27272728
|
jalview.analysis.scoremodels.SecondaryStructureDistanceModelTest.testFindDistances_withSSUndefinedInEitherOneSeqjalview.analysis.scoremodels.SecondaryStructureDistanceModelTest.testFindDistances_withSSUndefinedInEitherOneSeq | 1PASS | ||
0.27272728
|
jalview.gui.AnnotationLabelsTest2.testIdWidthChangesjalview.gui.AnnotationLabelsTest2.testIdWidthChanges | 1PASS | ||
0.27272728
|
jalview.io.ScoreMatrixFileTest.testParseMatrix_aaindex_tooFewColumnsjalview.io.ScoreMatrixFileTest.testParseMatrix_aaindex_tooFewColumns | 1PASS | ||
0.27272728
|
jalview.schemes.FeatureColourTest.testGetDescriptionjalview.schemes.FeatureColourTest.testGetDescription | 1PASS | ||
0.27272728
|
jalview.datamodel.AlignmentTest.testAlignAs_dnaAsDnajalview.datamodel.AlignmentTest.testAlignAs_dnaAsDna | 1PASS | ||
0.27272728
|
jalview.gui.AlignFrameTest.testNewView_colourThresholdsjalview.gui.AlignFrameTest.testNewView_colourThresholds | 1PASS | ||
0.27272728
|
jalview.datamodel.SearchResultsTest.testHashcodejalview.datamodel.SearchResultsTest.testHashcode | 1PASS | ||
0.27272728
|
jalview.io.FeaturesFileTest.testPrintGffFormat_withFiltersjalview.io.FeaturesFileTest.testPrintGffFormat_withFilters | 1PASS | ||
0.27272728
|
jalview.bin.CommandsTest.structureImageAnnotationsOutputTestjalview.bin.CommandsTest.structureImageAnnotationsOutputTest | 1PASS | ||
0.27272728
|
jalview.util.MappingUtilsTest.testMapColumnSelection_dnaToProteinjalview.util.MappingUtilsTest.testMapColumnSelection_dnaToProtein | 1PASS | ||
0.27272728
|
jalview.util.MappingUtilsTest.testFindMappingsForSequencejalview.util.MappingUtilsTest.testFindMappingsForSequence | 1PASS | ||
0.27272728
|
jalview.io.PhylipFileTests.testInterleavedIOjalview.io.PhylipFileTests.testInterleavedIO | 1PASS | ||
0.27272728
|
jalview.gui.AnnotationChooserTest.testDeselectType_showForAlljalview.gui.AnnotationChooserTest.testDeselectType_showForAll | 1PASS | ||
0.27272728
|
jalview.project.Jalview2xmlTests.noDuplicatePdbMappingsMadejalview.project.Jalview2xmlTests.noDuplicatePdbMappingsMade | 1PASS | ||
0.27272728
|
jalview.util.MappingUtilsTest.testMapSequenceGroup_regionjalview.util.MappingUtilsTest.testMapSequenceGroup_region | 1PASS | ||
0.27272728
|
jalview.gui.AnnotationColumnChooserTest.testResetjalview.gui.AnnotationColumnChooserTest.testReset | 1PASS | ||
0.27272728
|
jalview.gui.AnnotationLabelsTest2.testIdWidthNoChangesjalview.gui.AnnotationLabelsTest2.testIdWidthNoChanges | 1PASS | ||
0.27272728
|
jalview.util.MappingUtilsTest.testMapSequenceGroup_sequencesjalview.util.MappingUtilsTest.testMapSequenceGroup_sequences | 1PASS | ||
0.27272728
|
jalview.datamodel.SearchResultsTest.testGetSequencesjalview.datamodel.SearchResultsTest.testGetSequences | 1PASS | ||
0.27272728
|
jalview.gui.SeqPanelTest.testFindMousePosition_wrapped_noAnnotationsjalview.gui.SeqPanelTest.testFindMousePosition_wrapped_noAnnotations | 1PASS | ||
0.27272728
|
jalview.gui.AnnotationChooserTest.testIsInActionScope_selectedScopejalview.gui.AnnotationChooserTest.testIsInActionScope_selectedScope | 1PASS | ||
0.27272728
|
jalview.bin.CommandsTest.structureImageAnnotationsOutputTestjalview.bin.CommandsTest.structureImageAnnotationsOutputTest | 1PASS | ||
0.27272728
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverGroupRepSeqsjalview.project.Jalview2xmlTests.testStoreAndRecoverGroupRepSeqs | 1PASS | ||
0.27272728
|
jalview.bin.CommandsTest.structureImageAnnotationsOutputTestjalview.bin.CommandsTest.structureImageAnnotationsOutputTest | 1PASS | ||
0.27272728
|
jalview.io.WindowsFileLoadAndSaveTest.loadAndSaveAlignmentjalview.io.WindowsFileLoadAndSaveTest.loadAndSaveAlignment | 1PASS | ||
0.27272728
|
jalview.gui.StructureViewerTest.testGetSequencesForPdbsjalview.gui.StructureViewerTest.testGetSequencesForPdbs | 1PASS | ||
0.27272728
|
jalview.gui.AlignmentPanelTest.testSetOverviewTitlejalview.gui.AlignmentPanelTest.testSetOverviewTitle | 1PASS | ||
0.27272728
|
jalview.io.PhylipFileTests.testSequentialIOjalview.io.PhylipFileTests.testSequentialIO | 1PASS | ||
0.27272728
|
jalview.util.MappingUtilsTest.testRemoveStartPositionsjalview.util.MappingUtilsTest.testRemoveStartPositions | 1PASS | ||
0.27272728
|
jalview.schemes.FeatureColourTest.testCopyConstructorjalview.schemes.FeatureColourTest.testCopyConstructor | 1PASS | ||
0.27272728
|
jalview.gui.AlignmentPanelTest.testCalculateIdWidth_noArgsjalview.gui.AlignmentPanelTest.testCalculateIdWidth_noArgs | 1PASS | ||
0.27272728
|
jalview.io.FeaturesFileTest.testParse_jalviewFeaturesOnlyjalview.io.FeaturesFileTest.testParse_jalviewFeaturesOnly | 1PASS | ||
0.27272728
|
jalview.project.Jalview2xmlTests.testAutoShowOverviewForLegacyProjectsjalview.project.Jalview2xmlTests.testAutoShowOverviewForLegacyProjects | 1PASS | ||
0.27272728
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverAnnotationRowElementColoursjalview.project.Jalview2xmlTests.testStoreAndRecoverAnnotationRowElementColours | 1PASS | ||
0.27272728
|
jalview.analysis.GroupingTest.testMakeGroupsWithBothjalview.analysis.GroupingTest.testMakeGroupsWithBoth | 1PASS | ||
0.27272728
|
jalview.gui.AlignFrameTest.testNewView_dsRefPreservedjalview.gui.AlignFrameTest.testNewView_dsRefPreserved | 1PASS | ||
0.27272728
|
jalview.project.Jalview2xmlTests.viewRefPdbAnnotationjalview.project.Jalview2xmlTests.viewRefPdbAnnotation | 1PASS | ||
0.27272728
|
jalview.io.PhylipFileTests.testSequentialDataExtractionjalview.io.PhylipFileTests.testSequentialDataExtraction | 1PASS | ||
0.27272728
|
jalview.bin.CommandsTest.structureImageAnnotationsOutputTestjalview.bin.CommandsTest.structureImageAnnotationsOutputTest | 1PASS | ||
0.27272728
|
jalview.util.MappingUtilsTest.testRemoveEndPositionsjalview.util.MappingUtilsTest.testRemoveEndPositions | 1PASS | ||
0.27272728
|
jalview.gui.AlignmentPanelTest.testSetOverviewTitle_automaticOverviewjalview.gui.AlignmentPanelTest.testSetOverviewTitle_automaticOverview | 1PASS | ||
0.27272728
|
jalview.schemes.FeatureColourTest.testParseJalviewFeatureColourjalview.schemes.FeatureColourTest.testParseJalviewFeatureColour | 1PASS | ||
0.27272728
|
jalview.analysis.AverageDistanceEngineTest.testUPGMAEnginejalview.analysis.AverageDistanceEngineTest.testUPGMAEngine | 1PASS | ||
0.27272728
|
jalview.util.MappingUtilsTest.testMapSequenceGroup_columnsjalview.util.MappingUtilsTest.testMapSequenceGroup_columns | 1PASS | ||
0.27272728
|
jalview.bin.CommandsTest.structureImageAnnotationsOutputTestjalview.bin.CommandsTest.structureImageAnnotationsOutputTest | 1PASS | ||
0.27272728
|
jalview.datamodel.AlignedCodonFrameTest.testGetCoveringMappingjalview.datamodel.AlignedCodonFrameTest.testGetCoveringMapping | 1PASS | ||
0.27272728
|
jalview.util.MappingUtilsTest.testMapColumnSelection_proteinToDnajalview.util.MappingUtilsTest.testMapColumnSelection_proteinToDna | 1PASS | ||
0.27272728
|
jalview.datamodel.AlignmentTest.testCreateDatasetAlignmentWithMappedToSeqsjalview.datamodel.AlignmentTest.testCreateDatasetAlignmentWithMappedToSeqs | 1PASS | ||
0.27272728
|
jalview.urls.UrlProviderTest.testInitUrlProviderjalview.urls.UrlProviderTest.testInitUrlProvider | 1PASS | ||
0.27272728
|
jalview.util.MappingUtilsTest.testMapColumnSelection_hiddenColumnsjalview.util.MappingUtilsTest.testMapColumnSelection_hiddenColumns | 1PASS | ||
0.27272728
|
jalview.datamodel.AlignmentTest.testDeleteSequenceByIndexjalview.datamodel.AlignmentTest.testDeleteSequenceByIndex | 1PASS | ||
0.27272728
|
jalview.bin.CommandsTest.structureImageOutputTestjalview.bin.CommandsTest.structureImageOutputTest | 1PASS | ||
0.27272728
|
jalview.datamodel.AlignmentViewTest.testGetVisibleContigsjalview.datamodel.AlignmentViewTest.testGetVisibleContigs | 1PASS | ||
0.27272728
|
jalview.analysis.GeneticCodesTest.testGetCodeTablejalview.analysis.GeneticCodesTest.testGetCodeTable | 1PASS | ||
0.27272728
|
jalview.project.Jalview2xmlTests.testMergeDatasetsforManyViewsjalview.project.Jalview2xmlTests.testMergeDatasetsforManyViews | 1PASS | ||
0.27272728
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverOverviewjalview.project.Jalview2xmlTests.testStoreAndRecoverOverview | 1PASS | ||
0.27272728
|
jalview.bin.CommandsTest2.structureOpeningArgsTestjalview.bin.CommandsTest2.structureOpeningArgsTest | 1PASS | ||
0.27272728
|
jalview.analysis.FinderTest.testFind_featuresOnlyjalview.analysis.FinderTest.testFind_featuresOnly | 1PASS | ||
0.27272728
|
jalview.project.Jalview2xmlTests.testRNAStructureRecoveryjalview.project.Jalview2xmlTests.testRNAStructureRecovery | 1PASS | ||
0.27272728
|
jalview.analysis.GeneticCodesTest.testTranslatejalview.analysis.GeneticCodesTest.testTranslate | 1PASS | ||
0.27272728
|
jalview.io.FeaturesFileTest.testParse_pureGff3jalview.io.FeaturesFileTest.testParse_pureGff3 | 1PASS | ||
0.27272728
|
jalview.schemes.FeatureColourTest.testGetColor_colourByLabeljalview.schemes.FeatureColourTest.testGetColor_colourByLabel | 1PASS | ||
0.27272728
|
jalview.gui.AnnotationLabelsTest2.testIdWidthNoChangesjalview.gui.AnnotationLabelsTest2.testIdWidthNoChanges | 1PASS | ||
0.27272728
|
jalview.io.ScoreMatrixFileTest.testParseMatrix_headerMissingjalview.io.ScoreMatrixFileTest.testParseMatrix_headerMissing | 1PASS | ||
0.27272728
|
jalview.util.MappingUtilsTest.testMapColumnSelection_nulljalview.util.MappingUtilsTest.testMapColumnSelection_null | 1PASS | ||
0.27272728
|
jalview.io.vcf.VCFLoaderTest.testDoLoad_reverseStrandjalview.io.vcf.VCFLoaderTest.testDoLoad_reverseStrand | 1PASS | ||
0.27272728
|
jalview.project.Jalview2xmlTests.testColourByAnnotScoresjalview.project.Jalview2xmlTests.testColourByAnnotScores | 1PASS | ||
0.27272728
|
jalview.gui.AnnotationChooserTest.testDeselectType_hideForSelectedjalview.gui.AnnotationChooserTest.testDeselectType_hideForSelected | 1PASS | ||
0.27272728
|
jalview.project.Jalview2xmlTests.testMergeDatasetsforViewsjalview.project.Jalview2xmlTests.testMergeDatasetsforViews | 1PASS | ||
0.27272728
|
jalview.datamodel.AlignmentTest.testDeleteAllAnnotations_excludingAutocalculatedjalview.datamodel.AlignmentTest.testDeleteAllAnnotations_excludingAutocalculated | 1PASS | ||
0.27272728
|
jalview.bin.CommandsTest.structureImageAnnotationsOutputTestjalview.bin.CommandsTest.structureImageAnnotationsOutputTest | 1PASS | ||
0.27272728
|
jalview.project.Jalview2xmlTests.testPcaViewAssociationjalview.project.Jalview2xmlTests.testPcaViewAssociation | 1PASS | ||
0.27272728
|
jalview.gui.ProgressBarTest.testConstructor_wrongLayoutjalview.gui.ProgressBarTest.testConstructor_wrongLayout | 1PASS | ||
0.27272728
|
jalview.datamodel.MappingTest.testToStringjalview.datamodel.MappingTest.testToString | 1PASS | ||
0.27272728
|
jalview.io.FeaturesFileTest.testParse_mixedJalviewGffjalview.io.FeaturesFileTest.testParse_mixedJalviewGff | 1PASS | ||
0.27272728
|
jalview.analysis.scoremodels.SecondaryStructureDistanceModelTest.testFindDistances_withSSUndefinedInBothSeqsjalview.analysis.scoremodels.SecondaryStructureDistanceModelTest.testFindDistances_withSSUndefinedInBothSeqs | 1PASS | ||
0.27272728
|
jalview.analysis.GeneticCodesTest.testTranslateCanonicaljalview.analysis.GeneticCodesTest.testTranslateCanonical | 1PASS | ||
0.27272728
|
jalview.datamodel.AlignedCodonFrameTest.testGetMappedCodons_dnaVariantsjalview.datamodel.AlignedCodonFrameTest.testGetMappedCodons_dnaVariants | 1PASS | ||
0.27272728
|
jalview.project.Jalview2xmlTests.testCopyViewSettingsjalview.project.Jalview2xmlTests.testCopyViewSettings | 1PASS | ||
0.27272728
|
jalview.datamodel.AlignedCodonFrameTest.testGetMappedRegion_eitherWayjalview.datamodel.AlignedCodonFrameTest.testGetMappedRegion_eitherWay | 1PASS | ||
0.27272728
|
jalview.util.CaseInsensitiveStringTest.testEqualsjalview.util.CaseInsensitiveStringTest.testEquals | 1PASS | ||
0.27272728
|
jalview.io.FeaturesFileTest.testParsejalview.io.FeaturesFileTest.testParse | 1PASS | ||
0.27272728
|
jalview.datamodel.AlignmentTest.testPropagateInsertionsjalview.datamodel.AlignmentTest.testPropagateInsertions | 1PASS | ||
0.27272728
|
jalview.gui.AlignmentPanelTest.testSetScrollValuesjalview.gui.AlignmentPanelTest.testSetScrollValues | 1PASS | ||
0.27272728
|
jalview.gui.AnnotationChooserTest.testResetOriginalStatejalview.gui.AnnotationChooserTest.testResetOriginalState | 1PASS | ||
0.27272728
|
jalview.io.ScoreMatrixFileTest.testParseMatrix_ncbiNotEnoughRowsjalview.io.ScoreMatrixFileTest.testParseMatrix_ncbiNotEnoughRows | 1PASS | ||
0.27272728
|
jalview.datamodel.SearchResultsTest.testAppendResultjalview.datamodel.SearchResultsTest.testAppendResult | 1PASS | ||
0.27272728
|
jalview.schemes.FeatureColourTest.testGetColor_GraduatedByAttributeValuejalview.schemes.FeatureColourTest.testGetColor_GraduatedByAttributeValue | 1PASS | ||
0.27272728
|
jalview.analysis.GeneticCodesTest.testTranslate_standardTableAmbiguityCodesjalview.analysis.GeneticCodesTest.testTranslate_standardTableAmbiguityCodes | 1PASS | ||
0.27272728
|
jalview.io.FeaturesFileTest.testPrintJalviewFormatjalview.io.FeaturesFileTest.testPrintJalviewFormat | 1PASS | ||
0.27272728
|
jalview.gui.SeqPanelTest.testFindMousePosition_wrapped_scales_longSequencejalview.gui.SeqPanelTest.testFindMousePosition_wrapped_scales_longSequence | 1PASS | ||
0.27272728
|
jalview.gui.SeqPanelTest.testGetEditStatusMessagejalview.gui.SeqPanelTest.testGetEditStatusMessage | 1PASS | ||
0.27272728
|
jalview.gui.ProgressBarTest.testSetProgressBarjalview.gui.ProgressBarTest.testSetProgressBar | 1PASS | ||
0.27272728
|
jalview.schemes.FeatureColourTest.testToJalviewFormatjalview.schemes.FeatureColourTest.testToJalviewFormat | 1PASS | ||
0.27272728
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverExpandedviewsjalview.project.Jalview2xmlTests.testStoreAndRecoverExpandedviews | 1PASS | ||
0.27272728
|
jalview.io.ScoreMatrixFileTest.testParseMatrix_ncbiTooManyRowsjalview.io.ScoreMatrixFileTest.testParseMatrix_ncbiTooManyRows | 1PASS | ||
0.27272728
|
jalview.gui.AnnotationChooserTest.testBuildActionButtonsPaneljalview.gui.AnnotationChooserTest.testBuildActionButtonsPanel | 1PASS | ||
0.27272728
|
jalview.project.Jalview2xmlTests.testStoreAndRestoreIDwidthAndAnnotationHeightjalview.project.Jalview2xmlTests.testStoreAndRestoreIDwidthAndAnnotationHeight | 1PASS | ||
0.27272728
|
jalview.bin.CommandsTest2.structureOpeningArgsTestjalview.bin.CommandsTest2.structureOpeningArgsTest | 1PASS | ||
0.27272728
|
jalview.bin.CommandsTest.structureImageOutputTestjalview.bin.CommandsTest.structureImageOutputTest | 1PASS | ||
0.27272728
|
jalview.project.Jalview2xmlTests.testTCoffeeScoresjalview.project.Jalview2xmlTests.testTCoffeeScores | 1PASS | ||
0.27272728
|
jalview.renderer.seqfeatures.FeatureRendererTest.testIsVisiblejalview.renderer.seqfeatures.FeatureRendererTest.testIsVisible | 1PASS | ||
0.27272728
|
jalview.gui.AnnotationChooserTest.testDeselectType_showForSelectedjalview.gui.AnnotationChooserTest.testDeselectType_showForSelected | 1PASS | ||
0.27272728
|
jalview.gui.StructureChooserTest.populateFilterComboBoxTestjalview.gui.StructureChooserTest.populateFilterComboBoxTest | 1PASS | ||
0.27272728
|
jalview.io.StockholmFileTest.pfamFileDataExtractionjalview.io.StockholmFileTest.pfamFileDataExtraction | 1PASS | ||
0.27272728
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverGeneLocusjalview.project.Jalview2xmlTests.testStoreAndRecoverGeneLocus | 1PASS | ||
0.27272728
|
jalview.bin.CommandsTest.structureImageOutputTestjalview.bin.CommandsTest.structureImageOutputTest | 1PASS | ||
0.27272728
|
jalview.bin.CommandsTest.structureImageOutputTestjalview.bin.CommandsTest.structureImageOutputTest | 1PASS | ||
0.27272728
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverPDBEntryjalview.project.Jalview2xmlTests.testStoreAndRecoverPDBEntry | 1PASS | ||
0.27272728
|
jalview.io.ScoreMatrixFileTest.testParseMatrix_aaIndexBlosum80jalview.io.ScoreMatrixFileTest.testParseMatrix_aaIndexBlosum80 | 1PASS | ||
0.27272728
|
jalview.workers.AlignCalcManagerTest.testRemoveWorkerForAnnotationjalview.workers.AlignCalcManagerTest.testRemoveWorkerForAnnotation | 1PASS | ||
0.27272728
|
jalview.datamodel.AlignedCodonFrameTest.testCouldReplaceSequencejalview.datamodel.AlignedCodonFrameTest.testCouldReplaceSequence | 1PASS | ||
0.27272728
|
jalview.bin.CommandsTest.structureImageAnnotationsOutputTestjalview.bin.CommandsTest.structureImageAnnotationsOutputTest | 1PASS | ||
0.27272728
|
jalview.datamodel.AlignmentTest.testVerifyAlignmentDatasetRefsjalview.datamodel.AlignmentTest.testVerifyAlignmentDatasetRefs | 1PASS | ||
0.22727273
|
jalview.bin.CommandsTest2.structureOpeningArgsTestjalview.bin.CommandsTest2.structureOpeningArgsTest | 1PASS | ||
0.22727273
|
jalview.gui.AlignFrameTest.testChangeColour_background_groupsAndThresholdsjalview.gui.AlignFrameTest.testChangeColour_background_groupsAndThresholds | 1PASS | ||
0.22727273
|
jalview.bin.CommandsTest2.structureOpeningArgsTestjalview.bin.CommandsTest2.structureOpeningArgsTest | 1PASS | ||
0.22727273
|
jalview.gui.FeatureSettingsTest.testSaveLoadjalview.gui.FeatureSettingsTest.testSaveLoad | 1PASS | ||
0.22727273
|
jalview.gui.AnnotationLabelsTest2.testIdWidthChangesjalview.gui.AnnotationLabelsTest2.testIdWidthChanges | 1PASS | ||
0.22727273
|
jalview.gui.AnnotationLabelsTest.testDrawLabelsjalview.gui.AnnotationLabelsTest.testDrawLabels | 1PASS | ||
0.22727273
|
jalview.bin.CommandsTest.commandsOpenTestjalview.bin.CommandsTest.commandsOpenTest | 1PASS | ||
0.22727273
|
jalview.renderer.seqfeatures.FeatureRendererTest.testGetColourjalview.renderer.seqfeatures.FeatureRendererTest.testGetColour | 1PASS | ||
0.22727273
|
jalview.renderer.seqfeatures.FeatureRendererTest.testFindFeaturesAtColumnjalview.renderer.seqfeatures.FeatureRendererTest.testFindFeaturesAtColumn | 1PASS | ||
0.22727273
|
jalview.bin.CommandsTest.commandsOpenTestjalview.bin.CommandsTest.commandsOpenTest | 1PASS | ||
0.22727273
|
jalview.bin.CommandsTest2.structureOpeningArgsTestjalview.bin.CommandsTest2.structureOpeningArgsTest | 1PASS | ||
0.22727273
|
jalview.gui.SeqPanelTest.testFindColumn_unwrappedjalview.gui.SeqPanelTest.testFindColumn_unwrapped | 1PASS | ||
0.18181819
|
jalview.util.MappingUtilsTest.testFindMappingsForSequenceAndOthersjalview.util.MappingUtilsTest.testFindMappingsForSequenceAndOthers | 1PASS | ||
0.18181819
|
jalview.util.MappingUtilsTest.testRemoveStartPositions_reverseStrandjalview.util.MappingUtilsTest.testRemoveStartPositions_reverseStrand | 1PASS | ||
0.18181819
|
jalview.io.ScoreMatrixFileTest.testParseMatrix_aaindex_tooManyRowsjalview.io.ScoreMatrixFileTest.testParseMatrix_aaindex_tooManyRows | 1PASS | ||
0.18181819
|
jalview.datamodel.AlignmentTest.testDeleteSequenceBySeqjalview.datamodel.AlignmentTest.testDeleteSequenceBySeq | 1PASS | ||
0.18181819
|
jalview.util.MappingUtilsTest.testFlattenRanges_reverseStrandjalview.util.MappingUtilsTest.testFlattenRanges_reverseStrand | 1PASS | ||
0.09090909
|
jalview.datamodel.AlignmentTest.testFindAnnotations_bySeqLabelandorCalcIdjalview.datamodel.AlignmentTest.testFindAnnotations_bySeqLabelandorCalcId | 1PASS |
1 | /* | ||||||
2 | * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) | ||||||
3 | * Copyright (C) $$Year-Rel$$ The Jalview Authors | ||||||
4 | * | ||||||
5 | * This file is part of Jalview. | ||||||
6 | * | ||||||
7 | * Jalview is free software: you can redistribute it and/or | ||||||
8 | * modify it under the terms of the GNU General Public License | ||||||
9 | * as published by the Free Software Foundation, either version 3 | ||||||
10 | * of the License, or (at your option) any later version. | ||||||
11 | * | ||||||
12 | * Jalview is distributed in the hope that it will be useful, but | ||||||
13 | * WITHOUT ANY WARRANTY; without even the implied warranty | ||||||
14 | * of MERCHANTABILITY or FITNESS FOR A PARTICULAR | ||||||
15 | * PURPOSE. See the GNU General Public License for more details. | ||||||
16 | * | ||||||
17 | * You should have received a copy of the GNU General Public License | ||||||
18 | * along with Jalview. If not, see <http://www.gnu.org/licenses/>. | ||||||
19 | * The Jalview Authors are detailed in the 'AUTHORS' file. | ||||||
20 | */ | ||||||
21 | package jalview.ws.jws2; | ||||||
22 | |||||||
23 | import jalview.util.MessageManager; | ||||||
24 | import jalview.ws.jws2.jabaws2.Jws2Instance; | ||||||
25 | import jalview.ws.params.ArgumentI; | ||||||
26 | import jalview.ws.params.WsParamSetI; | ||||||
27 | |||||||
28 | import java.util.List; | ||||||
29 | |||||||
30 | import compbio.metadata.Preset; | ||||||
31 | |||||||
|
|||||||
32 | public class JabaPreset implements WsParamSetI | ||||||
33 | { | ||||||
34 | Preset p = null; | ||||||
35 | |||||||
36 | Jws2Instance service; | ||||||
37 | |||||||
|
|||||||
38 | 438 | public JabaPreset(Jws2Instance svc, Preset preset)... | |||||
39 | { | ||||||
40 | 438 | service = svc; | |||||
41 | 438 | p = preset; | |||||
42 | } | ||||||
43 | |||||||
|
|||||||
44 | 17460 | @Override... | |||||
45 | public String getName() | ||||||
46 | { | ||||||
47 | 17460 | return p.getName(); | |||||
48 | } | ||||||
49 | |||||||
|
|||||||
50 | 17022 | @Override... | |||||
51 | public String getDescription() | ||||||
52 | { | ||||||
53 | 17022 | return p.getDescription(); | |||||
54 | } | ||||||
55 | |||||||
|
|||||||
56 | 0 | @Override... | |||||
57 | public String[] getApplicableUrls() | ||||||
58 | { | ||||||
59 | 0 | return new String[] { service.getUri() }; | |||||
60 | } | ||||||
61 | |||||||
|
|||||||
62 | 0 | @Override... | |||||
63 | public String getSourceFile() | ||||||
64 | { | ||||||
65 | 0 | return null; | |||||
66 | } | ||||||
67 | |||||||
|
|||||||
68 | 17022 | @Override... | |||||
69 | public boolean isModifiable() | ||||||
70 | { | ||||||
71 | 17022 | return false; | |||||
72 | } | ||||||
73 | |||||||
|
|||||||
74 | 0 | @Override... | |||||
75 | public void setSourceFile(String newfile) | ||||||
76 | { | ||||||
77 | 0 | throw new Error(MessageManager | |||||
78 | .formatMessage("error.cannot_set_source_file_for", new String[] | ||||||
79 | { getClass().toString() })); | ||||||
80 | } | ||||||
81 | |||||||
|
|||||||
82 | 0 | @Override... | |||||
83 | public List<ArgumentI> getArguments() | ||||||
84 | { | ||||||
85 | 0 | try | |||||
86 | { | ||||||
87 | 0 | return JabaParamStore.getJwsArgsfromJaba( | |||||
88 | p.getArguments(service.getRunnerConfig())); | ||||||
89 | } catch (Exception e) | ||||||
90 | { | ||||||
91 | 0 | e.printStackTrace(); | |||||
92 | 0 | throw new Error(MessageManager | |||||
93 | .getString("error.mismatch_service_instance_preset")); | ||||||
94 | } | ||||||
95 | } | ||||||
96 | |||||||
|
|||||||
97 | 0 | @Override... | |||||
98 | public void setArguments(List<ArgumentI> args) | ||||||
99 | { | ||||||
100 | 0 | throw new Error(MessageManager | |||||
101 | .getString("error.cannot_set_params_for_ws_preset")); | ||||||
102 | } | ||||||
103 | } |