|
com.stevesoft.pat.patInf
com.stevesoft.pat.patInf
|
1.0100%
|
|
|
jalview.io.DataSourceType
jalview.io.DataSourceType
|
1.0100%
|
|
|
jalview.xml.binding.jalview.JalviewModel.JSeq.Pdbids
jalview.xml.binding.jalview.JalviewModel.JSeq.Pdbids
|
1.0100%
|
|
|
jalview.renderer.ScaleRenderer.ScaleMark
jalview.renderer.ScaleRenderer.ScaleMark
|
1.0100%
|
|
|
jalview.ws.WSClient
jalview.ws.WSClient
|
1.0100%
|
|
|
jalview.project.Jalview2XML.JvAnnotRow
jalview.project.Jalview2XML.JvAnnotRow
|
1.0100%
|
|
|
jalview.datamodel.VisibleContigsIterator
jalview.datamodel.VisibleContigsIterator
|
1.0100%
|
|
|
jalview.datamodel.HiddenCursorPosition
jalview.datamodel.HiddenCursorPosition
|
1.0100%
|
|
|
jalview.datamodel.ResidueCount.SymbolCounts
jalview.datamodel.ResidueCount.SymbolCounts
|
1.0100%
|
|
|
jalview.schemes.ZappoColourScheme
jalview.schemes.ZappoColourScheme
|
1.0100%
|
|
|
jalview.gui.ProgressPanel
jalview.gui.ProgressPanel
|
0.975609897.6%
|
|
|
jalview.jbgui.GAlignmentPanel
jalview.jbgui.GAlignmentPanel
|
0.9494%
|
|
|
jalview.analysis.Conservation
jalview.analysis.Conservation
|
0.8916256489.2%
|
|
|
jalview.datamodel.HiddenColumnsCursor
jalview.datamodel.HiddenColumnsCursor
|
0.89062589.1%
|
|
|
jalview.util.QuickSort.IntComparator
jalview.util.QuickSort.IntComparator
|
0.8571428785.7%
|
|
|
com.stevesoft.pat.OrMark
com.stevesoft.pat.OrMark
|
0.8585%
|
|
|
jalview.viewmodel.styles.ViewStyle
jalview.viewmodel.styles.ViewStyle
|
0.8476562584.8%
|
|
|
com.stevesoft.pat.Rthings
com.stevesoft.pat.Rthings
|
0.8461538684.6%
|
|
|
mc_view.Residue
mc_view.Residue
|
0.8461538684.6%
|
|
|
jalview.viewmodel.seqfeatures.FeatureRendererSettings
jalview.viewmodel.seqfeatures.FeatureRendererSettings
|
0.8444444584.4%
|
|
|
jalview.datamodel.VisibleRowsCollection
jalview.datamodel.VisibleRowsCollection
|
0.833333383.3%
|
|
|
com.stevesoft.pat.SubMark
com.stevesoft.pat.SubMark
|
0.880%
|
|
|
jalview.datamodel.VisibleColsCollection
jalview.datamodel.VisibleColsCollection
|
0.880%
|
|
|
jalview.datamodel.VisibleRowsIterator
jalview.datamodel.VisibleRowsIterator
|
0.880%
|
|
|
jalview.util.LinkedIdentityHashSet
jalview.util.LinkedIdentityHashSet
|
0.7727272577.3%
|
|
|
jalview.datamodel.StructureViewerModel
jalview.datamodel.StructureViewerModel
|
0.7676%
|
|
|
jalview.workers.ConsensusThread
jalview.workers.ConsensusThread
|
0.7575757575.8%
|
|
|
jalview.structures.models.SequenceStructureBindingModel
jalview.structures.models.SequenceStructureBindingModel
|
0.7575%
|
|
|
jalview.schemes.ResidueColourScheme
jalview.schemes.ResidueColourScheme
|
0.738095273.8%
|
|
|
jalview.xml.binding.jalview.SequenceSet
jalview.xml.binding.jalview.SequenceSet
|
0.736842173.7%
|
|
|
jalview.datamodel.Profiles
jalview.datamodel.Profiles
|
0.7333333573.3%
|
|
|
jalview.renderer.OverviewResColourFinder
jalview.renderer.OverviewResColourFinder
|
0.729729773%
|
|
|
jalview.viewmodel.OverviewDimensions
jalview.viewmodel.OverviewDimensions
|
0.7230769472.3%
|
|
|
jalview.datamodel.RangeElementsIterator
jalview.datamodel.RangeElementsIterator
|
0.7187571.9%
|
|
|
jalview.gui.FeatureRenderer
jalview.gui.FeatureRenderer
|
0.7142857371.4%
|
|
|
jalview.util.LinkedIdentityHashSet.IdentityWrapper
jalview.util.LinkedIdentityHashSet.IdentityWrapper
|
0.7142857371.4%
|
|
|
jalview.jbgui.GStructureViewer
jalview.jbgui.GStructureViewer
|
0.703296770.3%
|
|
|
jalview.workers.AlignCalcManager
jalview.workers.AlignCalcManager
|
0.7023809670.2%
|
|
|
com.stevesoft.pat.Bracket
com.stevesoft.pat.Bracket
|
0.770%
|
|
|
jalview.renderer.OverviewRenderer
jalview.renderer.OverviewRenderer
|
0.698795269.9%
|
|
|
jalview.datamodel.StartRegionIterator
jalview.datamodel.StartRegionIterator
|
0.694444469.4%
|
|
|
jalview.gui.TreePanel.TreeLoader
jalview.gui.TreePanel.TreeLoader
|
0.687568.8%
|
|
|
jalview.renderer.seqfeatures.FeatureColourFinder
jalview.renderer.seqfeatures.FeatureColourFinder
|
0.686274568.6%
|
|
|
com.stevesoft.pat.oneChar
com.stevesoft.pat.oneChar
|
0.685714368.6%
|
|
|
jalview.ws.SequenceFetcher
jalview.ws.SequenceFetcher
|
0.678571467.9%
|
|
|
jalview.xml.binding.jalview.JalviewModel.FeatureSettings
jalview.xml.binding.jalview.JalviewModel.FeatureSettings
|
0.666666766.7%
|
|
|
jalview.xml.binding.jalview.JalviewModel.JSeq
jalview.xml.binding.jalview.JalviewModel.JSeq
|
0.666666766.7%
|
|
|
jalview.gui.IdCanvas
jalview.gui.IdCanvas
|
0.656140365.6%
|
|
|
jalview.workers.ConservationThread
jalview.workers.ConservationThread
|
0.655172465.5%
|
|
|
jalview.io.PDBFeatureSettings
jalview.io.PDBFeatureSettings
|
0.6428571364.3%
|
|
|
com.stevesoft.pat.Range
com.stevesoft.pat.Range
|
0.636363663.6%
|
|
|
com.stevesoft.pat.wrap.StringWrap
com.stevesoft.pat.wrap.StringWrap
|
0.62562.5%
|
|
|
jalview.datamodel.StructureViewerModel.StructureData
jalview.datamodel.StructureViewerModel.StructureData
|
0.62562.5%
|
|
|
com.stevesoft.pat.StrPos
com.stevesoft.pat.StrPos
|
0.6162790761.6%
|
|
|
jalview.xml.binding.jalview.JalviewModel
jalview.xml.binding.jalview.JalviewModel
|
0.6153846461.5%
|
|
|
jalview.xml.binding.jalview.Pdbentry
jalview.xml.binding.jalview.Pdbentry
|
0.611111161.1%
|
|
|
jalview.analysis.SequenceIdMatcher.SeqIdName
jalview.analysis.SequenceIdMatcher.SeqIdName
|
0.605263260.5%
|
|
|
jalview.renderer.ResidueColourFinder
jalview.renderer.ResidueColourFinder
|
0.595238159.5%
|
|
|
jalview.util.ParseHtmlBodyAndLinks
jalview.util.ParseHtmlBodyAndLinks
|
0.594202959.4%
|
|
|
jalview.jbgui.GAlignFrame
jalview.jbgui.GAlignFrame
|
0.588732458.9%
|
|
|
jalview.xml.binding.jalview.Feature
jalview.xml.binding.jalview.Feature
|
0.588235358.8%
|
|
|
jalview.jbgui.GTreePanel
jalview.jbgui.GTreePanel
|
0.584158458.4%
|
|
|
jalview.datamodel.Profile
jalview.datamodel.Profile
|
0.571428657.1%
|
|
|
jalview.schemes.FeatureSettingsAdapter
jalview.schemes.FeatureSettingsAdapter
|
0.571428657.1%
|
|
|
jalview.util.CaseInsensitiveString
jalview.util.CaseInsensitiveString
|
0.565217456.5%
|
|
|
jalview.renderer.ScaleRenderer
jalview.renderer.ScaleRenderer
|
0.5656%
|
|
|
jalview.datamodel.BinaryNode
jalview.datamodel.BinaryNode
|
0.541666754.2%
|
|
|
mc_view.PDBChain
mc_view.PDBChain
|
0.5329670353.3%
|
|
|
jalview.gui.PaintRefresher
jalview.gui.PaintRefresher
|
0.5211267552.1%
|
|
|
com.stevesoft.pat.Boundary
com.stevesoft.pat.Boundary
|
0.518518551.9%
|
|
|
jalview.ext.jmol.JmolParser
jalview.ext.jmol.JmolParser
|
0.509333350.9%
|
|
|
com.stevesoft.pat.Pattern
com.stevesoft.pat.Pattern
|
0.506944450.7%
|
|
|
jalview.gui.JalviewChangeSupport
jalview.gui.JalviewChangeSupport
|
0.550%
|
|
|
com.stevesoft.pat.FastChar
com.stevesoft.pat.FastChar
|
0.550%
|
|
|
com.stevesoft.pat.FastMulti
com.stevesoft.pat.FastMulti
|
0.550%
|
|
|
jalview.viewmodel.ViewportProperties
jalview.viewmodel.ViewportProperties
|
0.550%
|
|
|
jalview.xml.binding.jalview.Feature.OtherData
jalview.xml.binding.jalview.Feature.OtherData
|
0.550%
|
|
|
jalview.xml.binding.jalview.AnnotationElement
jalview.xml.binding.jalview.AnnotationElement
|
0.550%
|
|
|
jalview.xml.binding.jalview.SequenceType
jalview.xml.binding.jalview.SequenceType
|
0.550%
|
|
|
jalview.xml.binding.jalview.JalviewModel.FeatureSettings.Group
jalview.xml.binding.jalview.JalviewModel.FeatureSettings.Group
|
0.550%
|
|
|
jalview.xml.binding.jalview.JalviewModel.Viewport.HiddenColumns
jalview.xml.binding.jalview.JalviewModel.Viewport.HiddenColumns
|
0.550%
|
|
|
jalview.xml.binding.jalview.Annotation
jalview.xml.binding.jalview.Annotation
|
0.550%
|
|
|
jalview.xml.binding.jalview.Sequence.DBRef
jalview.xml.binding.jalview.Sequence.DBRef
|
0.550%
|
|
|
mc_view.Bond
mc_view.Bond
|
0.550%
|
|
|
jalview.schemes.TaylorColourScheme
jalview.schemes.TaylorColourScheme
|
0.550%
|
|
|
jalview.schemes.FlowerColourScheme
jalview.schemes.FlowerColourScheme
|
0.550%
|
|
|
jalview.schemes.NucleotideAmbiguityColourScheme
jalview.schemes.NucleotideAmbiguityColourScheme
|
0.550%
|
|
|
jalview.schemes.PurinePyrimidineColourScheme
jalview.schemes.PurinePyrimidineColourScheme
|
0.550%
|
|
|
jalview.schemes.NucleotideColourScheme
jalview.schemes.NucleotideColourScheme
|
0.550%
|
|
|
jalview.schemes.BlossomColourScheme
jalview.schemes.BlossomColourScheme
|
0.550%
|
|
|
jalview.schemes.SunsetColourScheme
jalview.schemes.SunsetColourScheme
|
0.550%
|
|
|
jalview.schemes.OceanColourScheme
jalview.schemes.OceanColourScheme
|
0.550%
|
|
|
jalview.xml.binding.jalview.JalviewModel.Viewport
jalview.xml.binding.jalview.JalviewModel.Viewport
|
0.4927536249.3%
|
|
|
jalview.analysis.SequenceIdMatcher
jalview.analysis.SequenceIdMatcher
|
0.4912280749.1%
|
|
|
jalview.xml.binding.jalview.JalviewModel.JGroup
jalview.xml.binding.jalview.JalviewModel.JGroup
|
0.4901960849%
|
|
|
jalview.datamodel.PDBEntry
jalview.datamodel.PDBEntry
|
0.488986848.9%
|
|
|
jalview.gui.SequenceRenderer
jalview.gui.SequenceRenderer
|
0.4855769348.6%
|
|
|
jalview.xml.binding.jalview.JalviewModel.Tree
jalview.xml.binding.jalview.JalviewModel.Tree
|
0.4761904847.6%
|
|
|
jalview.util.MessageManager
jalview.util.MessageManager
|
0.4761904847.6%
|
|
|
jalview.gui.ColourMenuHelper
jalview.gui.ColourMenuHelper
|
0.466101746.6%
|
|
|
jalview.datamodel.features.SequenceFeatures
jalview.datamodel.features.SequenceFeatures
|
0.4649681446.5%
|
|
|
jalview.xml.binding.jalview.JalviewModel.JSeq.Pdbids.StructureState
jalview.xml.binding.jalview.JalviewModel.JSeq.Pdbids.StructureState
|
0.464285746.4%
|
|
|
jalview.renderer.AnnotationRenderer
jalview.renderer.AnnotationRenderer
|
0.4619565346.2%
|
|
|
jalview.renderer.seqfeatures.FeatureRenderer
jalview.renderer.seqfeatures.FeatureRenderer
|
0.4603773746%
|
|
|
jalview.gui.OverviewCanvas
jalview.gui.OverviewCanvas
|
0.4568965445.7%
|
|
|
jalview.analysis.AAFrequency
jalview.analysis.AAFrequency
|
0.455696245.6%
|
|
|
jalview.datamodel.ResidueCount
jalview.datamodel.ResidueCount
|
0.4509090845.1%
|
|
|
com.stevesoft.pat.parsePerl
com.stevesoft.pat.parsePerl
|
0.448979644.9%
|
|
|
jalview.gui.SeqCanvas
jalview.gui.SeqCanvas
|
0.4438877744.4%
|
|
|
jalview.gui.AlignViewport
jalview.gui.AlignViewport
|
0.4315068443.2%
|
|
|
jalview.analysis.AlignSeq
jalview.analysis.AlignSeq
|
0.4307692343.1%
|
|
|
jalview.xml.binding.jalview.Sequence
jalview.xml.binding.jalview.Sequence
|
0.4285714342.9%
|
|
|
jalview.gui.OverviewPanel
jalview.gui.OverviewPanel
|
0.4235294242.4%
|
|
|
jalview.viewmodel.ViewportRanges
jalview.viewmodel.ViewportRanges
|
0.4224422642.2%
|
|
|
jalview.io.StructureFile
jalview.io.StructureFile
|
0.4186046441.9%
|
|
|
jalview.util.ShortcutKeyMaskExWrapper11
jalview.util.ShortcutKeyMaskExWrapper11
|
0.4166666641.7%
|
|
|
com.stevesoft.pat.Or
com.stevesoft.pat.Or
|
0.4102564241%
|
|
|
jalview.util.Comparison
jalview.util.Comparison
|
0.4094488340.9%
|
|
|
jalview.datamodel.HiddenSequences
jalview.datamodel.HiddenSequences
|
0.406392740.6%
|
|
|
jalview.ws.dbsources.EmblSource
jalview.ws.dbsources.EmblSource
|
0.440%
|
|
|
jalview.schemes.HydrophobicColourScheme
jalview.schemes.HydrophobicColourScheme
|
0.440%
|
|
|
jalview.schemes.HelixColourScheme
jalview.schemes.HelixColourScheme
|
0.440%
|
|
|
jalview.schemes.TurnColourScheme
jalview.schemes.TurnColourScheme
|
0.440%
|
|
|
jalview.schemes.StrandColourScheme
jalview.schemes.StrandColourScheme
|
0.440%
|
|
|
jalview.schemes.BuriedColourScheme
jalview.schemes.BuriedColourScheme
|
0.440%
|
|
|
jalview.structure.StructureImportSettings
jalview.structure.StructureImportSettings
|
0.440%
|
|
|
jalview.viewmodel.AlignmentViewport
jalview.viewmodel.AlignmentViewport
|
0.3975720739.8%
|
|
|
jalview.datamodel.Range
jalview.datamodel.Range
|
0.388888938.9%
|
|
|
jalview.gui.AlignmentPanel
jalview.gui.AlignmentPanel
|
0.3839811738.4%
|
|
|
jalview.datamodel.SequenceFeature
jalview.datamodel.SequenceFeature
|
0.3776978637.8%
|
|
|
jalview.renderer.ResidueShader
jalview.renderer.ResidueShader
|
0.3714285837.1%
|
|
|
jalview.analysis.TreeModel
jalview.analysis.TreeModel
|
0.3705179437.1%
|
|
|
jalview.util.Format
jalview.util.Format
|
0.3685300436.9%
|
|
|
jalview.io.NewickFile
jalview.io.NewickFile
|
0.3672055336.7%
|
|
|
jalview.datamodel.features.FeatureStore
jalview.datamodel.features.FeatureStore
|
0.3564954735.6%
|
|
|
jalview.ext.jmol.JalviewJmolBinding
jalview.ext.jmol.JalviewJmolBinding
|
0.3491735534.9%
|
|
|
jalview.ws.jws2.MsaWSClient
jalview.ws.jws2.MsaWSClient
|
0.348993334.9%
|
|
|
jalview.viewmodel.seqfeatures.FeaturesDisplayed
jalview.viewmodel.seqfeatures.FeaturesDisplayed
|
0.3437534.4%
|
|
|
jalview.datamodel.Annotation
jalview.datamodel.Annotation
|
0.3428571534.3%
|
|
|
jalview.datamodel.Sequence
jalview.datamodel.Sequence
|
0.3425605634.3%
|
|
|
jalview.datamodel.AlignmentAnnotation
jalview.datamodel.AlignmentAnnotation
|
0.3412534.1%
|
|
|
jalview.xml.binding.jalview.VAMSAS
jalview.xml.binding.jalview.VAMSAS
|
0.3333333433.3%
|
|
|
com.stevesoft.pat.Regex
com.stevesoft.pat.Regex
|
0.3263636232.6%
|
|
|
jalview.io.FileLoader
jalview.io.FileLoader
|
0.3177257531.8%
|
|
|
jalview.ws.rest.RestServiceDescription
jalview.ws.rest.RestServiceDescription
|
0.31531.5%
|
|
|
jalview.datamodel.PDBEntry.Type
jalview.datamodel.PDBEntry.Type
|
0.312531.2%
|
|
|
jalview.gui.IdwidthAdjuster
jalview.gui.IdwidthAdjuster
|
0.302631630.3%
|
|
|
jalview.viewmodel.seqfeatures.FeatureRendererModel
jalview.viewmodel.seqfeatures.FeatureRendererModel
|
0.2879499228.8%
|
|
|
jalview.ws.dbsources.EmblCdsSource
jalview.ws.dbsources.EmblCdsSource
|
0.285714328.6%
|
|
|
jalview.schemes.JalviewColourScheme
jalview.schemes.JalviewColourScheme
|
0.285714328.6%
|
|
|
jalview.datamodel.annotations.AnnotationRowBuilder
jalview.datamodel.annotations.AnnotationRowBuilder
|
0.282051328.2%
|
|
|
mc_view.Atom
mc_view.Atom
|
0.282051328.2%
|
|
|
jalview.gui.ScalePanel
jalview.gui.ScalePanel
|
0.273437527.3%
|
|
|
jalview.ws.jws2.JabaPreset
jalview.ws.jws2.JabaPreset
|
0.2727272827.3%
|
|
|
jalview.util.QuickSort
jalview.util.QuickSort
|
0.2653721626.5%
|
|
|
jalview.structure.StructureSelectionManager
jalview.structure.StructureSelectionManager
|
0.2626666726.3%
|
|
|
jalview.schemes.IdColourScheme
jalview.schemes.IdColourScheme
|
0.2608695626.1%
|
|
|
jalview.project.Jalview2XML
jalview.project.Jalview2XML
|
0.2562387625.6%
|
|
|
com.stevesoft.pat.NullPattern
com.stevesoft.pat.NullPattern
|
0.2525%
|
|
|
com.stevesoft.pat.StringRule
com.stevesoft.pat.StringRule
|
0.2525%
|
|
|
jalview.renderer.AnnotationRendererFactory
jalview.renderer.AnnotationRendererFactory
|
0.2525%
|
|
|
jalview.schemes.ColourSchemeProperty
jalview.schemes.ColourSchemeProperty
|
0.2525%
|
|
|
jalview.schemes.ColourSchemes
jalview.schemes.ColourSchemes
|
0.2456140424.6%
|
|
|
jalview.ws.rest.params.Alignment
jalview.ws.rest.params.Alignment
|
0.2435897424.4%
|
|
|
jalview.io.FileFormats
jalview.io.FileFormats
|
0.2424%
|
|
|
jalview.datamodel.DBRefEntry
jalview.datamodel.DBRefEntry
|
0.2397260224%
|
|
|
com.stevesoft.pat.RegRes
com.stevesoft.pat.RegRes
|
0.2391304423.9%
|
|
|
jalview.gui.TreePanel
jalview.gui.TreePanel
|
0.2364217223.6%
|
|
|
jalview.datamodel.SequenceCursor
jalview.datamodel.SequenceCursor
|
0.2333333323.3%
|
|
|
jalview.datamodel.Alignment
jalview.datamodel.Alignment
|
0.2327746723.3%
|
|
|
jalview.gui.JvSwingUtils
jalview.gui.JvSwingUtils
|
0.2312925223.1%
|
|
|
jalview.io.FileParse
jalview.io.FileParse
|
0.2311977723.1%
|
|
|
jalview.datamodel.SequenceNode
jalview.datamodel.SequenceNode
|
0.2307692323.1%
|
|
|
jalview.gui.AnnotationLabels
jalview.gui.AnnotationLabels
|
0.227848122.8%
|
|
|
jalview.gui.StructureViewerBase
jalview.gui.StructureViewerBase
|
0.2270029622.7%
|
|
|
jalview.datamodel.features.FeatureAttributes
jalview.datamodel.features.FeatureAttributes
|
0.224806222.5%
|
|
|
jalview.datamodel.SequenceGroup
jalview.datamodel.SequenceGroup
|
0.2178517421.8%
|
|
|
jalview.structure.StructureMapping
jalview.structure.StructureMapping
|
0.2176165721.8%
|
|
|
jalview.gui.AppJmol
jalview.gui.AppJmol
|
0.2142857221.4%
|
|
|
jalview.datamodel.features.FeatureAttributes.AttributeData
jalview.datamodel.features.FeatureAttributes.AttributeData
|
0.2127659621.3%
|
|
|
jalview.analysis.scoremodels.ScoreModels
jalview.analysis.scoremodels.ScoreModels
|
0.2115384621.2%
|
|
|
jalview.viewmodel.OverviewDimensionsHideHidden
jalview.viewmodel.OverviewDimensionsHideHidden
|
0.211267621.1%
|
|
|
jalview.ws.jws2.jabaws2.Jws2Instance
jalview.ws.jws2.jabaws2.Jws2Instance
|
0.2068965620.7%
|
|
|
jalview.ws.rest.InputType
jalview.ws.rest.InputType
|
0.2056074720.6%
|
|
|
com.stevesoft.pat.patInt
com.stevesoft.pat.patInt
|
0.220%
|
|
|
jalview.analysis.AnnotationSorter
jalview.analysis.AnnotationSorter
|
0.1970443319.7%
|
|
|
jalview.gui.AppJmolBinding
jalview.gui.AppJmolBinding
|
0.1962616919.6%
|
|
|
jalview.xml.binding.jalview.JalviewModel.FeatureSettings.Setting
jalview.xml.binding.jalview.JalviewModel.FeatureSettings.Setting
|
0.1935483819.4%
|
|
|
jalview.util.ColorUtils
jalview.util.ColorUtils
|
0.1881720418.8%
|
|
|
jalview.io.AlignFile
jalview.io.AlignFile
|
0.184931518.5%
|
|
|
jalview.structures.models.AAStructureBindingModel
jalview.structures.models.AAStructureBindingModel
|
0.1805392818.1%
|
|
|
jalview.schemes.TCoffeeColourScheme
jalview.schemes.TCoffeeColourScheme
|
0.1803278618%
|
|
|
jalview.schemes.Blosum62ColourScheme
jalview.schemes.Blosum62ColourScheme
|
0.176470617.6%
|
|
|
jalview.util.StringUtils
jalview.util.StringUtils
|
0.1723076917.2%
|
|
|
jalview.io.IdentifyFile
jalview.io.IdentifyFile
|
0.1650793716.5%
|
|
|
jalview.ws.jws1.WS1Client
jalview.ws.jws1.WS1Client
|
0.1616%
|
|
|
jalview.gui.AnnotationPanel
jalview.gui.AnnotationPanel
|
0.1596638716%
|
|
|
jalview.gui.Desktop.MyDesktopManager
jalview.gui.Desktop.MyDesktopManager
|
0.1555555615.6%
|
|
|
jalview.gui.AlignFrame
jalview.gui.AlignFrame
|
0.1519168815.2%
|
|
|
jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
|
0.148584914.9%
|
|
|
jalview.workers.AlignCalcWorker
jalview.workers.AlignCalcWorker
|
0.1428571514.3%
|
|
|
jalview.gui.Desktop.MyDesktopPane
jalview.gui.Desktop.MyDesktopPane
|
0.1428571514.3%
|
|
|
jalview.ws.jws2.Jws2Discoverer
jalview.ws.jws2.Jws2Discoverer
|
0.1425742514.3%
|
|
|
com.stevesoft.pat.Branch
com.stevesoft.pat.Branch
|
0.140939614.1%
|
|
|
jalview.schemes.PIDColourScheme
jalview.schemes.PIDColourScheme
|
0.1333333413.3%
|
|
|
jalview.ws.rest.params.SeqGroupIndexVector
jalview.ws.rest.params.SeqGroupIndexVector
|
0.12408759412.4%
|
|
|
jalview.gui.Desktop
jalview.gui.Desktop
|
0.12300683612.3%
|
|
|
jalview.analysis.CrossRef
jalview.analysis.CrossRef
|
0.1229508212.3%
|
|
|
jalview.structure.StructureCommand
jalview.structure.StructureCommand
|
0.1212%
|
|
|
jalview.ws.rest.RestClient
jalview.ws.rest.RestClient
|
0.11538461611.5%
|
|
|
jalview.util.MapList
jalview.util.MapList
|
0.11526479611.5%
|
|
|
jalview.util.ShortcutKeyMaskExWrapper
jalview.util.ShortcutKeyMaskExWrapper
|
0.1111111111.1%
|
|
|
jalview.ws.sifts.SiftsSettings
jalview.ws.sifts.SiftsSettings
|
0.1111111111.1%
|
|
|
jalview.schemes.RNAHelicesColour
jalview.schemes.RNAHelicesColour
|
0.1095890411%
|
|
|
jalview.schemes.FeatureColour
jalview.schemes.FeatureColour
|
0.10736842510.7%
|
|
|
jalview.util.DBRefUtils
jalview.util.DBRefUtils
|
0.1057401810.6%
|
|
|
jalview.datamodel.Mapping
jalview.datamodel.Mapping
|
0.10389610410.4%
|
|
|
jalview.analysis.scoremodels.ScoreMatrix
jalview.analysis.scoremodels.ScoreMatrix
|
0.1028806610.3%
|
|
|
jalview.ws.rest.params.AnnotationFile
jalview.ws.rest.params.AnnotationFile
|
0.10256410410.3%
|
|
|
com.stevesoft.pat.ReplaceRule
com.stevesoft.pat.ReplaceRule
|
0.08771938.8%
|
|
|
jalview.ws.dbsources.Xfam
jalview.ws.dbsources.Xfam
|
0.086956528.7%
|
|
|
jalview.ws.dbsources.Pdb
jalview.ws.dbsources.Pdb
|
0.085106388.5%
|
|
|
jalview.ws.jws2.Jws2Client
jalview.ws.jws2.Jws2Client
|
0.0843373468.4%
|
|
|
jalview.ext.ensembl.EnsemblSequenceFetcher
jalview.ext.ensembl.EnsemblSequenceFetcher
|
0.0833333368.3%
|
|
|
jalview.gui.Console
jalview.gui.Console
|
0.082568818.3%
|
|
|
jalview.gui.ProgressBar
jalview.gui.ProgressBar
|
0.081300818.1%
|
|
|
jalview.ws.seqfetcher.DbSourceProxyImpl
jalview.ws.seqfetcher.DbSourceProxyImpl
|
0.081081088.1%
|
|
|
jalview.gui.TreeCanvas
jalview.gui.TreeCanvas
|
0.078518527.9%
|
|
|
jalview.datamodel.ColumnSelection.IntList
jalview.datamodel.ColumnSelection.IntList
|
0.074766357.5%
|
|
|
jalview.util.Platform
jalview.util.Platform
|
0.0707547147.1%
|
|
|
jalview.gui.IdPanel
jalview.gui.IdPanel
|
0.067264576.7%
|
|
|
jalview.log.JLogger
jalview.log.JLogger
|
0.065934076.6%
|
|
|
com.stevesoft.pat.RegOpt
com.stevesoft.pat.RegOpt
|
0.06474826.5%
|
|
|
jalview.io.FileFormat
jalview.io.FileFormat
|
0.0620155046.2%
|
|
|
ext.vamsas.ServiceHandle
ext.vamsas.ServiceHandle
|
0.061224496.1%
|
|
|
jalview.bin.Cache
jalview.bin.Cache
|
0.0606060626.1%
|
|
|
jalview.gui.ViewSelectionMenu
jalview.gui.ViewSelectionMenu
|
0.059405945.9%
|
|
|
jalview.bin.Console
jalview.bin.Console
|
0.05911335.9%
|
|
|
jalview.ws.seqfetcher.ASequenceFetcher
jalview.ws.seqfetcher.ASequenceFetcher
|
0.0577777775.8%
|
|
|
jalview.datamodel.ContactMapHolder
jalview.datamodel.ContactMapHolder
|
0.0576923085.8%
|
|
|
jalview.ws.jws1.Discoverer
jalview.ws.jws1.Discoverer
|
0.0512820525.1%
|
|
|
jalview.analysis.GeneticCodes
jalview.analysis.GeneticCodes
|
0.0496894425%
|
|
|
jalview.datamodel.SecondaryStructureCount
jalview.datamodel.SecondaryStructureCount
|
0.0468754.7%
|
|
|
jalview.io.AppletFormatAdapter
jalview.io.AppletFormatAdapter
|
0.043478264.3%
|
|
|
jalview.ws.jws2.JabaParamStore
jalview.ws.jws2.JabaParamStore
|
0.0416666684.2%
|
|
|
jalview.gui.StructureViewer
jalview.gui.StructureViewer
|
0.0346534663.5%
|
|
|
jalview.gui.SliderPanel
jalview.gui.SliderPanel
|
0.031253.1%
|
|
|
jalview.ws.jws1.JPredClient
jalview.ws.jws1.JPredClient
|
0.0310559013.1%
|
|
|
jalview.schemes.ClustalxColourScheme
jalview.schemes.ClustalxColourScheme
|
0.0254237282.5%
|
|
|
jalview.controller.AlignViewController
jalview.controller.AlignViewController
|
0.0238907862.4%
|
|
|
jalview.datamodel.ColumnSelection
jalview.datamodel.ColumnSelection
|
0.017182131.7%
|
|
|
jalview.ws.dbsources.Uniprot
jalview.ws.dbsources.Uniprot
|
0.0155642021.6%
|
|
|
mc_view.PDBfile
mc_view.PDBfile
|
0.0150375941.5%
|
|
|
jalview.datamodel.SearchResults
jalview.datamodel.SearchResults
|
0.0128205131.3%
|
|
|
jalview.gui.SeqPanel
jalview.gui.SeqPanel
|
0.0125412541.3%
|
|
|
jalview.io.SequenceAnnotationReport
jalview.io.SequenceAnnotationReport
|
0.0122699381.2%
|
|
|
jalview.util.HttpUtils
jalview.util.HttpUtils
|
0.01169590651.2%
|
|
|
jalview.bin.Jalview
jalview.bin.Jalview
|
0.0099277981%
|
|
|
jalview.gui.SequenceFetcher
jalview.gui.SequenceFetcher
|
0.0089285720.9%
|
|
|
jalview.ext.ensembl.EnsemblGene
jalview.ext.ensembl.EnsemblGene
|
0.0081632650.8%
|
|
|
jalview.gui.QuitHandler
jalview.gui.QuitHandler
|
0.00722021660.7%
|
|
|
jalview.analysis.AlignmentUtils
jalview.analysis.AlignmentUtils
|
0.0043859650.4%
|
|
|
com.stevesoft.pat.CaseMgr
com.stevesoft.pat.CaseMgr
|
0.00278551530.3%
|
|
|
jalview.schemes.ResidueProperties
jalview.schemes.ResidueProperties
|
0.00105042020.1%
|
|
