Coverage Report
File PDBFeatureSettings.java
Coverage histogram
20% of files have more coverage
Classes
| Class | Line # | Actions | |||
|---|---|---|---|---|---|
| PDBFeatureSettings | 31 | 14 | 9 |
Contributing tests
This file is covered by 31 tests.
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Source view
| 1 | /* | |
| 2 | * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) | |
| 3 | * Copyright (C) $$Year-Rel$$ The Jalview Authors | |
| 4 | * | |
| 5 | * This file is part of Jalview. | |
| 6 | * | |
| 7 | * Jalview is free software: you can redistribute it and/or | |
| 8 | * modify it under the terms of the GNU General Public License | |
| 9 | * as published by the Free Software Foundation, either version 3 | |
| 10 | * of the License, or (at your option) any later version. | |
| 11 | * | |
| 12 | * Jalview is distributed in the hope that it will be useful, but | |
| 13 | * WITHOUT ANY WARRANTY; without even the implied warranty | |
| 14 | * of MERCHANTABILITY or FITNESS FOR A PARTICULAR | |
| 15 | * PURPOSE. See the GNU General Public License for more details. | |
| 16 | * | |
| 17 | * You should have received a copy of the GNU General Public License | |
| 18 | * along with Jalview. If not, see <http://www.gnu.org/licenses/>. | |
| 19 | * The Jalview Authors are detailed in the 'AUTHORS' file. | |
| 20 | */ | |
| 21 | package jalview.io; | |
| 22 | ||
| 23 | import jalview.api.FeatureColourI; | |
| 24 | import jalview.schemes.FeatureColour; | |
| 25 | import jalview.schemes.FeatureSettingsAdapter; | |
| 26 | ||
| 27 | import java.awt.Color; | |
| 28 | ||
| 29 | import mc_view.PDBChain; | |
| 30 | ||
| 31 | public class PDBFeatureSettings extends FeatureSettingsAdapter | |
| 32 | { | |
| 33 | // TODO find one central place to define feature names | |
| 34 | private static final String FEATURE_INSERTION = "INSERTION"; | |
| 35 | ||
| 36 | private static final String FEATURE_RES_NUM = PDBChain.RESNUM_FEATURE; | |
| 37 | ||
| 38 | 191 |  @Override |
| 39 | public boolean isFeatureHidden(String type) | |
| 40 | { | |
| 41 | 191 | return type.equalsIgnoreCase(FEATURE_RES_NUM); |
| 42 | } | |
| 43 | ||
| 44 | 191 | @Override |
| 45 | public FeatureColourI getFeatureColour(String type) | |
| 46 | { | |
| 47 | 191 | if (type.equalsIgnoreCase(FEATURE_INSERTION)) |
| 48 | { | |
| 49 | 0 | return new FeatureColour() |
| 50 | { | |
| 51 | ||
| 52 | 0 | @Override |
| 53 | public Color getColour() | |
| 54 | { | |
| 55 | 0 | return Color.RED; |
| 56 | } | |
| 57 | }; | |
| 58 | } | |
| 59 | 191 | return null; |
| 60 | } | |
| 61 | ||
| 62 | /** | |
| 63 | * Order to render insertion after ResNum | |
| 64 | */ | |
| 65 | 384 | @Override |
| 66 | public int compare(String feature1, String feature2) | |
| 67 | { | |
| 68 | 384 | if (feature1.equalsIgnoreCase(FEATURE_INSERTION)) |
| 69 | { | |
| 70 | 0 | return +1; |
| 71 | } | |
| 72 | 384 | if (feature2.equalsIgnoreCase(FEATURE_INSERTION)) |
| 73 | { | |
| 74 | 0 | return -1; |
| 75 | } | |
| 76 | 384 | if (feature1.equalsIgnoreCase(FEATURE_RES_NUM)) |
| 77 | { | |
| 78 | 1 | return +1; |
| 79 | } | |
| 80 | 383 | if (feature2.equalsIgnoreCase(FEATURE_RES_NUM)) |
| 81 | { | |
| 82 | 112 | return -1; |
| 83 | } | |
| 84 | 271 | return 0; |
| 85 | } | |
| 86 | } |