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jalview.io.DataSourceType
jalview.io.DataSourceType
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1.0100%
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jalview.ws.WSClient
jalview.ws.WSClient
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1.0100%
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jalview.datamodel.HiddenCursorPosition
jalview.datamodel.HiddenCursorPosition
|
1.0100%
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jalview.datamodel.ResidueCount.SymbolCounts
jalview.datamodel.ResidueCount.SymbolCounts
|
1.0100%
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jalview.jbgui.GAlignmentPanel
jalview.jbgui.GAlignmentPanel
|
0.9494%
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jalview.datamodel.HiddenColumnsCursor
jalview.datamodel.HiddenColumnsCursor
|
0.79687579.7%
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jalview.util.LinkedIdentityHashSet
jalview.util.LinkedIdentityHashSet
|
0.7727272577.3%
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jalview.analysis.Conservation
jalview.analysis.Conservation
|
0.753694675.4%
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jalview.structures.models.SequenceStructureBindingModel
jalview.structures.models.SequenceStructureBindingModel
|
0.7575%
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jalview.datamodel.Profiles
jalview.datamodel.Profiles
|
0.7333333573.3%
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jalview.gui.FeatureRenderer
jalview.gui.FeatureRenderer
|
0.7142857371.4%
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jalview.util.LinkedIdentityHashSet.IdentityWrapper
jalview.util.LinkedIdentityHashSet.IdentityWrapper
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0.7142857371.4%
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jalview.workers.ConsensusThread
jalview.workers.ConsensusThread
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0.696969769.7%
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jalview.datamodel.RangeIterator
jalview.datamodel.RangeIterator
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0.675675767.6%
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jalview.jbgui.GAlignFrame
jalview.jbgui.GAlignFrame
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0.581220758.1%
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jalview.workers.ConservationThread
jalview.workers.ConservationThread
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0.568965556.9%
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jalview.viewmodel.ViewportProperties
jalview.viewmodel.ViewportProperties
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0.550%
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jalview.schemes.TaylorColourScheme
jalview.schemes.TaylorColourScheme
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0.550%
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jalview.schemes.FlowerColourScheme
jalview.schemes.FlowerColourScheme
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0.550%
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jalview.schemes.ZappoColourScheme
jalview.schemes.ZappoColourScheme
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0.550%
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jalview.schemes.NucleotideAmbiguityColourScheme
jalview.schemes.NucleotideAmbiguityColourScheme
|
0.550%
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jalview.schemes.PurinePyrimidineColourScheme
jalview.schemes.PurinePyrimidineColourScheme
|
0.550%
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jalview.schemes.NucleotideColourScheme
jalview.schemes.NucleotideColourScheme
|
0.550%
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jalview.schemes.BlossomColourScheme
jalview.schemes.BlossomColourScheme
|
0.550%
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jalview.schemes.SunsetColourScheme
jalview.schemes.SunsetColourScheme
|
0.550%
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jalview.schemes.OceanColourScheme
jalview.schemes.OceanColourScheme
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0.550%
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jalview.util.MessageManager
jalview.util.MessageManager
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0.4761904847.6%
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jalview.gui.ColourMenuHelper
jalview.gui.ColourMenuHelper
|
0.4322033843.2%
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jalview.datamodel.CigarArray
jalview.datamodel.CigarArray
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0.4183673641.8%
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jalview.util.ShortcutKeyMaskExWrapper11
jalview.util.ShortcutKeyMaskExWrapper11
|
0.4166666641.7%
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jalview.io.FileFormats
jalview.io.FileFormats
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0.440%
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jalview.util.SparseCount
jalview.util.SparseCount
|
0.440%
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jalview.schemes.HydrophobicColourScheme
jalview.schemes.HydrophobicColourScheme
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0.440%
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jalview.schemes.HelixColourScheme
jalview.schemes.HelixColourScheme
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0.440%
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jalview.schemes.TurnColourScheme
jalview.schemes.TurnColourScheme
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0.440%
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jalview.schemes.StrandColourScheme
jalview.schemes.StrandColourScheme
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0.440%
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jalview.schemes.BuriedColourScheme
jalview.schemes.BuriedColourScheme
|
0.440%
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jalview.workers.AlignCalcManager
jalview.workers.AlignCalcManager
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0.380952438.1%
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jalview.datamodel.Profile
jalview.datamodel.Profile
|
0.37537.5%
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jalview.schemes.ResidueColourScheme
jalview.schemes.ResidueColourScheme
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0.3571428735.7%
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jalview.datamodel.ResidueCount
jalview.datamodel.ResidueCount
|
0.3563636235.6%
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jalview.io.AlignFile
jalview.io.AlignFile
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0.356164435.6%
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jalview.io.FileLoader
jalview.io.FileLoader
|
0.3511705735.1%
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jalview.ws.jws2.MsaWSClient
jalview.ws.jws2.MsaWSClient
|
0.348993334.9%
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jalview.io.FastaFile
jalview.io.FastaFile
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0.315315331.5%
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jalview.ws.rest.RestServiceDescription
jalview.ws.rest.RestServiceDescription
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0.31531.5%
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jalview.viewmodel.styles.ViewStyle
jalview.viewmodel.styles.ViewStyle
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0.2929687529.3%
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jalview.schemes.JalviewColourScheme
jalview.schemes.JalviewColourScheme
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0.285714328.6%
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jalview.io.IdentifyFile
jalview.io.IdentifyFile
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0.279365127.9%
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jalview.ws.jws2.JabaPreset
jalview.ws.jws2.JabaPreset
|
0.2727272827.3%
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jalview.gui.AlignViewport
jalview.gui.AlignViewport
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0.2694063826.9%
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jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
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0.2665094426.7%
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jalview.util.Comparison
jalview.util.Comparison
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0.2637795226.4%
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jalview.gui.ProgressBar
jalview.gui.ProgressBar
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0.2520325225.2%
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jalview.gui.JalviewChangeSupport
jalview.gui.JalviewChangeSupport
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0.2525%
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jalview.ws.rest.params.Alignment
jalview.ws.rest.params.Alignment
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0.2435897424.4%
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jalview.datamodel.SequenceCursor
jalview.datamodel.SequenceCursor
|
0.2333333323.3%
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jalview.gui.AlignmentPanel
jalview.gui.AlignmentPanel
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0.232037723.2%
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jalview.gui.JvSwingUtils
jalview.gui.JvSwingUtils
|
0.2312925223.1%
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jalview.ext.jmol.JalviewJmolBinding
jalview.ext.jmol.JalviewJmolBinding
|
0.2293388422.9%
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jalview.ext.android.SparseShortArray
jalview.ext.android.SparseShortArray
|
0.225988722.6%
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jalview.viewmodel.AlignmentViewport
jalview.viewmodel.AlignmentViewport
|
0.2101669221%
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jalview.ws.jws2.jabaws2.Jws2Instance
jalview.ws.jws2.jabaws2.Jws2Instance
|
0.2068965620.7%
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jalview.datamodel.ColumnSelection.IntList
jalview.datamodel.ColumnSelection.IntList
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0.2056074720.6%
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jalview.ws.rest.InputType
jalview.ws.rest.InputType
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0.2056074720.6%
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jalview.analysis.AAFrequency
jalview.analysis.AAFrequency
|
0.1898734119%
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jalview.datamodel.CigarBase
jalview.datamodel.CigarBase
|
0.1858407118.6%
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jalview.datamodel.Sequence
jalview.datamodel.Sequence
|
0.1825259518.3%
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jalview.schemes.IdColourScheme
jalview.schemes.IdColourScheme
|
0.1739130517.4%
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jalview.analysis.AnnotationSorter
jalview.analysis.AnnotationSorter
|
0.1674876816.7%
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jalview.datamodel.SeqCigar
jalview.datamodel.SeqCigar
|
0.1646341516.5%
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jalview.io.FileParse
jalview.io.FileParse
|
0.164345416.4%
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jalview.ws.jws1.WS1Client
jalview.ws.jws1.WS1Client
|
0.1616%
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jalview.gui.Desktop.MyDesktopManager
jalview.gui.Desktop.MyDesktopManager
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0.1555555615.6%
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jalview.ws.jws2.Jws2Discoverer
jalview.ws.jws2.Jws2Discoverer
|
0.1504950515%
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jalview.util.Format
jalview.util.Format
|
0.1490683314.9%
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jalview.schemes.TCoffeeColourScheme
jalview.schemes.TCoffeeColourScheme
|
0.1475409914.8%
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jalview.gui.PaintRefresher
jalview.gui.PaintRefresher
|
0.1408450814.1%
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jalview.datamodel.AlignmentView
jalview.datamodel.AlignmentView
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0.1337295613.4%
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jalview.datamodel.Alignment
jalview.datamodel.Alignment
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0.1294227212.9%
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jalview.viewmodel.ViewportRanges
jalview.viewmodel.ViewportRanges
|
0.1287128812.9%
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jalview.ws.rest.params.SeqGroupIndexVector
jalview.ws.rest.params.SeqGroupIndexVector
|
0.12408759412.4%
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jalview.gui.AppJmolBinding
jalview.gui.AppJmolBinding
|
0.1214953312.1%
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jalview.datamodel.features.SequenceFeatures
jalview.datamodel.features.SequenceFeatures
|
0.1210191112.1%
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jalview.io.FormatAdapter
jalview.io.FormatAdapter
|
0.1212%
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jalview.util.StringUtils
jalview.util.StringUtils
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0.1212%
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jalview.schemes.Blosum62ColourScheme
jalview.schemes.Blosum62ColourScheme
|
0.1176470611.8%
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jalview.analysis.scoremodels.ScoreModels
jalview.analysis.scoremodels.ScoreModels
|
0.11538461611.5%
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jalview.ws.rest.RestClient
jalview.ws.rest.RestClient
|
0.11538461611.5%
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jalview.datamodel.Annotation
jalview.datamodel.Annotation
|
0.11428571511.4%
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jalview.structures.models.AAStructureBindingModel
jalview.structures.models.AAStructureBindingModel
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0.113716311.4%
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jalview.ext.android.ContainerHelpers
jalview.ext.android.ContainerHelpers
|
0.1111111111.1%
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jalview.util.ShortcutKeyMaskExWrapper
jalview.util.ShortcutKeyMaskExWrapper
|
0.1111111111.1%
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jalview.schemes.ColourSchemeProperty
jalview.schemes.ColourSchemeProperty
|
0.1111111111.1%
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jalview.io.FileFormat
jalview.io.FileFormat
|
0.1085271310.9%
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jalview.analysis.SeqsetUtils
jalview.analysis.SeqsetUtils
|
0.1027397310.3%
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jalview.ws.rest.params.AnnotationFile
jalview.ws.rest.params.AnnotationFile
|
0.10256410410.3%
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jalview.gui.AlignFrame
jalview.gui.AlignFrame
|
0.1017556410.2%
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jalview.util.QuickSort
jalview.util.QuickSort
|
0.10032362510%
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jalview.io.AppletFormatAdapter
jalview.io.AppletFormatAdapter
|
0.0993788849.9%
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jalview.workers.AlignCalcWorker
jalview.workers.AlignCalcWorker
|
0.09523819.5%
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jalview.datamodel.ColumnSelection
jalview.datamodel.ColumnSelection
|
0.09278359.3%
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jalview.util.ColorUtils
jalview.util.ColorUtils
|
0.0860215058.6%
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jalview.ws.jws2.Jws2Client
jalview.ws.jws2.Jws2Client
|
0.0843373468.4%
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jalview.schemes.RNAHelicesColour
jalview.schemes.RNAHelicesColour
|
0.082191788.2%
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jalview.datamodel.AlignmentAnnotation
jalview.datamodel.AlignmentAnnotation
|
0.0757.5%
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jalview.schemes.ColourSchemes
jalview.schemes.ColourSchemes
|
0.070175447%
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jalview.gui.IdPanel
jalview.gui.IdPanel
|
0.067264576.7%
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jalview.gui.StructureViewerBase
jalview.gui.StructureViewerBase
|
0.066765586.7%
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jalview.schemes.PIDColourScheme
jalview.schemes.PIDColourScheme
|
0.066666676.7%
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jalview.log.JLogger
jalview.log.JLogger
|
0.065934076.6%
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jalview.gui.IdwidthAdjuster
jalview.gui.IdwidthAdjuster
|
0.0657894766.6%
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jalview.renderer.ResidueShader
jalview.renderer.ResidueShader
|
0.064285726.4%
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jalview.analysis.CrossRef
jalview.analysis.CrossRef
|
0.063524596.4%
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jalview.gui.Desktop
jalview.gui.Desktop
|
0.062072896.2%
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jalview.analysis.scoremodels.ScoreMatrix
jalview.analysis.scoremodels.ScoreMatrix
|
0.0617283966.2%
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ext.vamsas.ServiceHandle
ext.vamsas.ServiceHandle
|
0.061224496.1%
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jalview.gui.ViewSelectionMenu
jalview.gui.ViewSelectionMenu
|
0.059405945.9%
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jalview.renderer.seqfeatures.FeatureColourFinder
jalview.renderer.seqfeatures.FeatureColourFinder
|
0.058823535.9%
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jalview.util.Platform
jalview.util.Platform
|
0.0566037745.7%
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jalview.gui.StructureChooser.PDBEntryTableModel
jalview.gui.StructureChooser.PDBEntryTableModel
|
0.052631585.3%
|
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jalview.ws.jws1.Discoverer
jalview.ws.jws1.Discoverer
|
0.0512820525.1%
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jalview.analysis.GeneticCodes
jalview.analysis.GeneticCodes
|
0.0496894425%
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jalview.bin.Console
jalview.bin.Console
|
0.0492610824.9%
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jalview.gui.Desktop.MyDesktopPane
jalview.gui.Desktop.MyDesktopPane
|
0.047619054.8%
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jalview.gui.AnnotationPanel
jalview.gui.AnnotationPanel
|
0.0430672284.3%
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jalview.ws.jws2.JabaParamStore
jalview.ws.jws2.JabaParamStore
|
0.0416666684.2%
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jalview.structure.StructureSelectionManager
jalview.structure.StructureSelectionManager
|
0.0413333334.1%
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jalview.bin.Cache
jalview.bin.Cache
|
0.0385674953.9%
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jalview.ws.jws1.JPredClient
jalview.ws.jws1.JPredClient
|
0.0310559013.1%
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jalview.datamodel.PDBEntry
jalview.datamodel.PDBEntry
|
0.0308370053.1%
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jalview.gui.IdCanvas
jalview.gui.IdCanvas
|
0.0245614032.5%
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jalview.util.DBRefUtils
jalview.util.DBRefUtils
|
0.0241691842.4%
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jalview.renderer.ResidueColourFinder
jalview.renderer.ResidueColourFinder
|
0.0238095242.4%
|
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jalview.gui.ScalePanel
jalview.gui.ScalePanel
|
0.02343752.3%
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jalview.gui.SplashScreen
jalview.gui.SplashScreen
|
0.0194805191.9%
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jalview.schemes.ClustalxColourScheme
jalview.schemes.ClustalxColourScheme
|
0.0169491531.7%
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jalview.gui.AppJmol
jalview.gui.AppJmol
|
0.0150375941.5%
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jalview.gui.SequenceRenderer
jalview.gui.SequenceRenderer
|
0.0144230771.4%
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jalview.controller.AlignViewController
jalview.controller.AlignViewController
|
0.0136518771.4%
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jalview.analysis.AlignSeq
jalview.analysis.AlignSeq
|
0.0128205131.3%
|
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jalview.gui.SeqPanel
jalview.gui.SeqPanel
|
0.0125412541.3%
|
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jalview.io.SequenceAnnotationReport
jalview.io.SequenceAnnotationReport
|
0.0122699381.2%
|
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jalview.gui.AnnotationLabels
jalview.gui.AnnotationLabels
|
0.01150747951.2%
|
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jalview.gui.SeqCanvas
jalview.gui.SeqCanvas
|
0.010020041%
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jalview.jbgui.GStructureChooser
jalview.jbgui.GStructureChooser
|
0.009900991%
|
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jalview.datamodel.HiddenSequences
jalview.datamodel.HiddenSequences
|
0.009132420.9%
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jalview.gui.SequenceFetcher
jalview.gui.SequenceFetcher
|
0.0089285720.9%
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jalview.bin.Jalview
jalview.bin.Jalview
|
0.0081227440.8%
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jalview.renderer.seqfeatures.FeatureRenderer
jalview.renderer.seqfeatures.FeatureRenderer
|
0.007547170.8%
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jalview.gui.QuitHandler
jalview.gui.QuitHandler
|
0.00722021660.7%
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jalview.renderer.AnnotationRenderer
jalview.renderer.AnnotationRenderer
|
0.00362318850.4%
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