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  1. Project Clover database Wed Oct 31 2018 15:13:58 GMT
  2. Package uk.ac.ebi.www.picr.AccessionMappingService

File AccessionMapperBindingStub.java

 

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Classes

Class Line # Actions
AccessionMapperBindingStub 23 155 29 196
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1    /*
2    * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3    * Copyright (C) $$Year-Rel$$ The Jalview Authors
4    *
5    * This file is part of Jalview.
6    *
7    * Jalview is free software: you can redistribute it and/or
8    * modify it under the terms of the GNU General Public License
9    * as published by the Free Software Foundation, either version 3
10    * of the License, or (at your option) any later version.
11    *
12    * Jalview is distributed in the hope that it will be useful, but
13    * WITHOUT ANY WARRANTY; without even the implied warranty
14    * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15    * PURPOSE. See the GNU General Public License for more details.
16    *
17    * You should have received a copy of the GNU General Public License
18    * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19    * The Jalview Authors are detailed in the 'AUTHORS' file.
20    */
21    package uk.ac.ebi.www.picr.AccessionMappingService;
22   
 
23    public class AccessionMapperBindingStub extends org.apache.axis.client.Stub
24    implements
25    uk.ac.ebi.www.picr.AccessionMappingService.AccessionMapperInterface
26    {
27    private java.util.Vector cachedSerClasses = new java.util.Vector();
28   
29    private java.util.Vector cachedSerQNames = new java.util.Vector();
30   
31    private java.util.Vector cachedSerFactories = new java.util.Vector();
32   
33    private java.util.Vector cachedDeserFactories = new java.util.Vector();
34   
35    static org.apache.axis.description.OperationDesc[] _operations;
36   
 
37  0 toggle static
38    {
39  0 _operations = new org.apache.axis.description.OperationDesc[3];
40  0 _initOperationDesc1();
41    }
42   
 
43  0 toggle private static void _initOperationDesc1()
44    {
45  0 org.apache.axis.description.OperationDesc oper;
46  0 oper = new org.apache.axis.description.OperationDesc();
47  0 oper.setName("getUPIForSequence");
48  0 oper.addParameter(
49    new javax.xml.namespace.QName(
50    "http://www.ebi.ac.uk/picr/AccessionMappingService",
51    "sequence"), new javax.xml.namespace.QName(
52    "http://www.w3.org/2001/XMLSchema", "string"),
53    java.lang.String.class,
54    org.apache.axis.description.ParameterDesc.IN, false, false);
55  0 oper.addParameter(new javax.xml.namespace.QName(
56    "http://www.ebi.ac.uk/picr/AccessionMappingService",
57    "searchDatabases"), new javax.xml.namespace.QName(
58    "http://www.w3.org/2001/XMLSchema", "string"),
59    java.lang.String[].class,
60    org.apache.axis.description.ParameterDesc.IN, false, false);
61  0 oper.addParameter(
62    new javax.xml.namespace.QName(
63    "http://www.ebi.ac.uk/picr/AccessionMappingService",
64    "taxonId"), new javax.xml.namespace.QName(
65    "http://www.w3.org/2001/XMLSchema", "string"),
66    java.lang.String.class,
67    org.apache.axis.description.ParameterDesc.IN, false, false);
68  0 oper.addParameter(new javax.xml.namespace.QName(
69    "http://www.ebi.ac.uk/picr/AccessionMappingService",
70    "onlyActive"), new javax.xml.namespace.QName(
71    "http://www.w3.org/2001/XMLSchema", "boolean"), boolean.class,
72    org.apache.axis.description.ParameterDesc.IN, false, false);
73  0 oper.setReturnType(new javax.xml.namespace.QName(
74    "http://model.picr.ebi.ac.uk", "UPEntry"));
75  0 oper.setReturnClass(uk.ac.ebi.picr.model.UPEntry.class);
76  0 oper.setReturnQName(new javax.xml.namespace.QName(
77    "http://www.ebi.ac.uk/picr/AccessionMappingService",
78    "getUPIForSequenceReturn"));
79  0 oper.setStyle(org.apache.axis.constants.Style.WRAPPED);
80  0 oper.setUse(org.apache.axis.constants.Use.LITERAL);
81  0 _operations[0] = oper;
82   
83  0 oper = new org.apache.axis.description.OperationDesc();
84  0 oper.setName("getUPIForAccession");
85  0 oper.addParameter(new javax.xml.namespace.QName(
86    "http://www.ebi.ac.uk/picr/AccessionMappingService",
87    "accession"), new javax.xml.namespace.QName(
88    "http://www.w3.org/2001/XMLSchema", "string"),
89    java.lang.String.class,
90    org.apache.axis.description.ParameterDesc.IN, false, false);
91  0 oper.addParameter(new javax.xml.namespace.QName(
92    "http://www.ebi.ac.uk/picr/AccessionMappingService",
93    "ac_version"), new javax.xml.namespace.QName(
94    "http://www.w3.org/2001/XMLSchema", "string"),
95    java.lang.String.class,
96    org.apache.axis.description.ParameterDesc.IN, false, false);
97  0 oper.addParameter(new javax.xml.namespace.QName(
98    "http://www.ebi.ac.uk/picr/AccessionMappingService",
99    "searchDatabases"), new javax.xml.namespace.QName(
100    "http://www.w3.org/2001/XMLSchema", "string"),
101    java.lang.String[].class,
102    org.apache.axis.description.ParameterDesc.IN, false, false);
103  0 oper.addParameter(
104    new javax.xml.namespace.QName(
105    "http://www.ebi.ac.uk/picr/AccessionMappingService",
106    "taxonId"), new javax.xml.namespace.QName(
107    "http://www.w3.org/2001/XMLSchema", "string"),
108    java.lang.String.class,
109    org.apache.axis.description.ParameterDesc.IN, false, false);
110  0 oper.addParameter(new javax.xml.namespace.QName(
111    "http://www.ebi.ac.uk/picr/AccessionMappingService",
112    "onlyActive"), new javax.xml.namespace.QName(
113    "http://www.w3.org/2001/XMLSchema", "boolean"), boolean.class,
114    org.apache.axis.description.ParameterDesc.IN, false, false);
115  0 oper.setReturnType(new javax.xml.namespace.QName(
116    "http://model.picr.ebi.ac.uk", "UPEntry"));
117  0 oper.setReturnClass(uk.ac.ebi.picr.model.UPEntry[].class);
118  0 oper.setReturnQName(new javax.xml.namespace.QName(
119    "http://www.ebi.ac.uk/picr/AccessionMappingService",
120    "getUPIForAccessionReturn"));
121  0 oper.setStyle(org.apache.axis.constants.Style.WRAPPED);
122  0 oper.setUse(org.apache.axis.constants.Use.LITERAL);
123  0 _operations[1] = oper;
124   
125  0 oper = new org.apache.axis.description.OperationDesc();
126  0 oper.setName("getMappedDatabaseNames");
127  0 oper.setReturnType(new javax.xml.namespace.QName(
128    "http://www.w3.org/2001/XMLSchema", "string"));
129  0 oper.setReturnClass(java.lang.String[].class);
130  0 oper.setReturnQName(new javax.xml.namespace.QName(
131    "http://www.ebi.ac.uk/picr/AccessionMappingService",
132    "mappedDatabases"));
133  0 oper.setStyle(org.apache.axis.constants.Style.WRAPPED);
134  0 oper.setUse(org.apache.axis.constants.Use.LITERAL);
135  0 _operations[2] = oper;
136   
137    }
138   
 
139  0 toggle public AccessionMapperBindingStub() throws org.apache.axis.AxisFault
140    {
141  0 this(null);
142    }
143   
 
144  0 toggle public AccessionMapperBindingStub(java.net.URL endpointURL,
145    javax.xml.rpc.Service service) throws org.apache.axis.AxisFault
146    {
147  0 this(service);
148  0 super.cachedEndpoint = endpointURL;
149    }
150   
 
151  0 toggle public AccessionMapperBindingStub(javax.xml.rpc.Service service)
152    throws org.apache.axis.AxisFault
153    {
154  0 if (service == null)
155    {
156  0 super.service = new org.apache.axis.client.Service();
157    }
158    else
159    {
160  0 super.service = service;
161    }
162  0 java.lang.Class cls;
163  0 javax.xml.namespace.QName qName;
164  0 java.lang.Class beansf = org.apache.axis.encoding.ser.BeanSerializerFactory.class;
165  0 java.lang.Class beandf = org.apache.axis.encoding.ser.BeanDeserializerFactory.class;
166  0 java.lang.Class enumsf = org.apache.axis.encoding.ser.EnumSerializerFactory.class;
167  0 java.lang.Class enumdf = org.apache.axis.encoding.ser.EnumDeserializerFactory.class;
168  0 java.lang.Class arraysf = org.apache.axis.encoding.ser.ArraySerializerFactory.class;
169  0 java.lang.Class arraydf = org.apache.axis.encoding.ser.ArrayDeserializerFactory.class;
170  0 java.lang.Class simplesf = org.apache.axis.encoding.ser.SimpleSerializerFactory.class;
171  0 java.lang.Class simpledf = org.apache.axis.encoding.ser.SimpleDeserializerFactory.class;
172  0 java.lang.Class simplelistsf = org.apache.axis.encoding.ser.SimpleListSerializerFactory.class;
173  0 java.lang.Class simplelistdf = org.apache.axis.encoding.ser.SimpleListDeserializerFactory.class;
174  0 qName = new javax.xml.namespace.QName("http://model.picr.ebi.ac.uk",
175    "UPEntry");
176  0 cachedSerQNames.add(qName);
177  0 cls = uk.ac.ebi.picr.model.UPEntry.class;
178  0 cachedSerClasses.add(cls);
179  0 cachedSerFactories.add(beansf);
180  0 cachedDeserFactories.add(beandf);
181   
182  0 qName = new javax.xml.namespace.QName("http://model.picr.ebi.ac.uk",
183    "CrossReference");
184  0 cachedSerQNames.add(qName);
185  0 cls = uk.ac.ebi.picr.model.CrossReference.class;
186  0 cachedSerClasses.add(cls);
187  0 cachedSerFactories.add(beansf);
188  0 cachedDeserFactories.add(beandf);
189   
190    }
191   
 
192  0 toggle protected org.apache.axis.client.Call createCall()
193    throws java.rmi.RemoteException
194    {
195  0 try
196    {
197  0 org.apache.axis.client.Call _call = (org.apache.axis.client.Call) super.service
198    .createCall();
199  0 if (super.maintainSessionSet)
200    {
201  0 _call.setMaintainSession(super.maintainSession);
202    }
203  0 if (super.cachedUsername != null)
204    {
205  0 _call.setUsername(super.cachedUsername);
206    }
207  0 if (super.cachedPassword != null)
208    {
209  0 _call.setPassword(super.cachedPassword);
210    }
211  0 if (super.cachedEndpoint != null)
212    {
213  0 _call.setTargetEndpointAddress(super.cachedEndpoint);
214    }
215  0 if (super.cachedTimeout != null)
216    {
217  0 _call.setTimeout(super.cachedTimeout);
218    }
219  0 if (super.cachedPortName != null)
220    {
221  0 _call.setPortName(super.cachedPortName);
222    }
223  0 java.util.Enumeration keys = super.cachedProperties.keys();
224  0 while (keys.hasMoreElements())
225    {
226  0 java.lang.String key = (java.lang.String) keys.nextElement();
227  0 _call.setProperty(key, super.cachedProperties.get(key));
228    }
229    // All the type mapping information is registered
230    // when the first call is made.
231    // The type mapping information is actually registered in
232    // the TypeMappingRegistry of the service, which
233    // is the reason why registration is only needed for the first call.
234  0 synchronized (this)
235    {
236  0 if (firstCall())
237    {
238    // must set encoding style before registering serializers
239  0 _call.setEncodingStyle(null);
240  0 for (int i = 0; i < cachedSerFactories.size(); ++i)
241    {
242  0 java.lang.Class cls = (java.lang.Class) cachedSerClasses.get(i);
243  0 javax.xml.namespace.QName qName = (javax.xml.namespace.QName) cachedSerQNames
244    .get(i);
245  0 java.lang.Class sf = (java.lang.Class) cachedSerFactories
246    .get(i);
247  0 java.lang.Class df = (java.lang.Class) cachedDeserFactories
248    .get(i);
249  0 _call.registerTypeMapping(cls, qName, sf, df, false);
250    }
251    }
252    }
253  0 return _call;
254    } catch (java.lang.Throwable _t)
255    {
256  0 throw new org.apache.axis.AxisFault(
257    "Failure trying to get the Call object", _t);
258    }
259    }
260   
 
261  0 toggle public uk.ac.ebi.picr.model.UPEntry getUPIForSequence(
262    java.lang.String sequence, java.lang.String[] searchDatabases,
263    java.lang.String taxonId, boolean onlyActive)
264    throws java.rmi.RemoteException
265    {
266  0 if (super.cachedEndpoint == null)
267    {
268  0 throw new org.apache.axis.NoEndPointException();
269    }
270  0 org.apache.axis.client.Call _call = createCall();
271  0 _call.setOperation(_operations[0]);
272  0 _call.setUseSOAPAction(true);
273  0 _call.setSOAPActionURI("getUPIForSequence");
274  0 _call.setEncodingStyle(null);
275  0 _call.setProperty(org.apache.axis.client.Call.SEND_TYPE_ATTR,
276    Boolean.FALSE);
277  0 _call.setProperty(org.apache.axis.AxisEngine.PROP_DOMULTIREFS,
278    Boolean.FALSE);
279  0 _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
280  0 _call.setOperationName(new javax.xml.namespace.QName(
281    "http://www.ebi.ac.uk/picr/AccessionMappingService",
282    "getUPIForSequence"));
283   
284  0 setRequestHeaders(_call);
285  0 setAttachments(_call);
286  0 java.lang.Object _resp = _call.invoke(new java.lang.Object[] {
287    sequence, searchDatabases, taxonId,
288    new java.lang.Boolean(onlyActive) });
289   
290  0 if (_resp instanceof java.rmi.RemoteException)
291    {
292  0 throw (java.rmi.RemoteException) _resp;
293    }
294    else
295    {
296  0 extractAttachments(_call);
297  0 try
298    {
299  0 return (uk.ac.ebi.picr.model.UPEntry) _resp;
300    } catch (java.lang.Exception _exception)
301    {
302  0 return (uk.ac.ebi.picr.model.UPEntry) org.apache.axis.utils.JavaUtils
303    .convert(_resp, uk.ac.ebi.picr.model.UPEntry.class);
304    }
305    }
306    }
307   
 
308  0 toggle public uk.ac.ebi.picr.model.UPEntry[] getUPIForAccession(
309    java.lang.String accession, java.lang.String ac_version,
310    java.lang.String[] searchDatabases, java.lang.String taxonId,
311    boolean onlyActive) throws java.rmi.RemoteException
312    {
313  0 if (super.cachedEndpoint == null)
314    {
315  0 throw new org.apache.axis.NoEndPointException();
316    }
317  0 org.apache.axis.client.Call _call = createCall();
318  0 _call.setOperation(_operations[1]);
319  0 _call.setUseSOAPAction(true);
320  0 _call.setSOAPActionURI("getUPIForAccession");
321  0 _call.setEncodingStyle(null);
322  0 _call.setProperty(org.apache.axis.client.Call.SEND_TYPE_ATTR,
323    Boolean.FALSE);
324  0 _call.setProperty(org.apache.axis.AxisEngine.PROP_DOMULTIREFS,
325    Boolean.FALSE);
326  0 _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
327  0 _call.setOperationName(new javax.xml.namespace.QName(
328    "http://www.ebi.ac.uk/picr/AccessionMappingService",
329    "getUPIForAccession"));
330   
331  0 setRequestHeaders(_call);
332  0 setAttachments(_call);
333  0 java.lang.Object _resp = _call.invoke(new java.lang.Object[] {
334    accession, ac_version, searchDatabases, taxonId,
335    new java.lang.Boolean(onlyActive) });
336   
337  0 if (_resp instanceof java.rmi.RemoteException)
338    {
339  0 throw (java.rmi.RemoteException) _resp;
340    }
341    else
342    {
343  0 extractAttachments(_call);
344  0 try
345    {
346  0 return (uk.ac.ebi.picr.model.UPEntry[]) _resp;
347    } catch (java.lang.Exception _exception)
348    {
349  0 return (uk.ac.ebi.picr.model.UPEntry[]) org.apache.axis.utils.JavaUtils
350    .convert(_resp, uk.ac.ebi.picr.model.UPEntry[].class);
351    }
352    }
353    }
354   
 
355  0 toggle public java.lang.String[] getMappedDatabaseNames()
356    throws java.rmi.RemoteException
357    {
358  0 if (super.cachedEndpoint == null)
359    {
360  0 throw new org.apache.axis.NoEndPointException();
361    }
362  0 org.apache.axis.client.Call _call = createCall();
363  0 _call.setOperation(_operations[2]);
364  0 _call.setUseSOAPAction(true);
365  0 _call.setSOAPActionURI("getMappedDatabaseNames");
366  0 _call.setEncodingStyle(null);
367  0 _call.setProperty(org.apache.axis.client.Call.SEND_TYPE_ATTR,
368    Boolean.FALSE);
369  0 _call.setProperty(org.apache.axis.AxisEngine.PROP_DOMULTIREFS,
370    Boolean.FALSE);
371  0 _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
372  0 _call.setOperationName(new javax.xml.namespace.QName(
373    "http://www.ebi.ac.uk/picr/AccessionMappingService",
374    "getMappedDatabaseNames"));
375   
376  0 setRequestHeaders(_call);
377  0 setAttachments(_call);
378  0 java.lang.Object _resp = _call.invoke(new java.lang.Object[] {});
379   
380  0 if (_resp instanceof java.rmi.RemoteException)
381    {
382  0 throw (java.rmi.RemoteException) _resp;
383    }
384    else
385    {
386  0 extractAttachments(_call);
387  0 try
388    {
389  0 return (java.lang.String[]) _resp;
390    } catch (java.lang.Exception _exception)
391    {
392  0 return (java.lang.String[]) org.apache.axis.utils.JavaUtils
393    .convert(_resp, java.lang.String[].class);
394    }
395    }
396    }
397   
398    }
  • Report generated by OpenClover v 4.2.1 on Wed Oct 31 2018 15:15:54 GMT using coverage data from Wed Oct 31 2018 15:15:47 GMT.
  • Clover free edition.