Classes

Class	Line #	Total Statements	Complexity	Uncovered Elements	TOTAL Coverage	Actions
UrlDownloadClient	36	25	10	10	0.705882470.6%	Show methods

Class UrlDownloadClient

Class UrlDownloadClient	Line # 36	Total Statements 25	Complexity 10	Uncovered Elements 10	TOTAL Coverage 0.705882470.6%
UrlDownloadClient()   UrlDownloadClient()	3838	0.00	1.01	0.00	-1.0 -1.0 -
download(String,String) : void   download(String,String) : void	5252	23.023	8.08	7.07	0.7586207 0.758620775.9%
download(String,File) : void   download(String,File) : void	115115	2.02	1.01	2.02	0.0 0.00%

 

Contributing tests

Contributing tests

Select all

	Test contribution	Test	Result	Actions
	0.7058824	jalview.io.Jalview2xmlTests.noDuplicatePdbMappingsMadejalview.io.Jalview2xmlTests.noDuplicatePdbMappingsMade	1PASS

 

Source view

1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21
22		package jalview.ws.utils;
23
24		import java.io.ByteArrayInputStream;
25		import java.io.File;
26		import java.io.FileOutputStream;
27		import java.io.IOException;
28		import java.net.URL;
29		import java.nio.channels.Channels;
30		import java.nio.channels.ReadableByteChannel;
31		import java.nio.file.Files;
32		import java.nio.file.Path;
33		import java.nio.file.Paths;
34		import java.nio.file.StandardCopyOption;
35
		70.6% Uncovered Elements: 10 (34) Complexity: 10 Complexity Density: 0.4
36		public class UrlDownloadClient
37		{
		- Uncovered Elements: 0 (0) Complexity: 1 Complexity Density: -
38	5	public UrlDownloadClient()...
39		{
40
41		}
42
43		/**
44		* Download and save a file from a URL
45		*
46		* @param urlstring
47		* url to download from, as string
48		* @param outfile
49		* the name of file to save the URLs to
50		* @throws IOException
51		*/
		75.9% Uncovered Elements: 7 (29) Complexity: 8 Complexity Density: 0.35
52	5	public static void download(String urlstring, String outfile)...
53		throws IOException
54		{
55
56	5	FileOutputStream fos = null;
57	5	ReadableByteChannel rbc = null;
58	5	Path temp = null;
59	5	try
60		{
61	5	temp = Files.createTempFile(".jalview_", ".tmp");
62
63	5	URL url = new URL(urlstring);
64	5	rbc = Channels.newChannel(url.openStream());
65	5	fos = new FileOutputStream(temp.toString());
66	5	fos.getChannel().transferFrom(rbc, 0, Long.MAX_VALUE);
67
68		// copy tempfile to outfile once our download completes
69		// incase something goes wrong
70	5	Files.copy(temp, Paths.get(outfile),
71		StandardCopyOption.REPLACE_EXISTING);
72		} catch (IOException e)
73		{
74	0	throw e;
75		} finally
76		{
77	5	try
78		{
79	5	if (fos != null)
80		{
81	5	fos.close();
82		}
83		} catch (IOException e)
84		{
85	0	System.out.println(
86		"Exception while closing download file output stream: "
87		+ e.getMessage());
88		}
89	5	try
90		{
91	5	if (rbc != null)
92		{
93	5	rbc.close();
94		}
95		} catch (IOException e)
96		{
97	0	System.out.println("Exception while closing download channel: "
98		+ e.getMessage());
99		}
100	5	try
101		{
102	5	if (temp != null)
103		{
104	5	Files.deleteIfExists(temp);
105		}
106		} catch (IOException e)
107		{
108	0	System.out.println("Exception while deleting download temp file: "
109		+ e.getMessage());
110		}
111		}
112
113		}
114
		0% Uncovered Elements: 2 (2) Complexity: 1 Complexity Density: 0.5
115	0	public static void download(String urlstring, File tempFile) throws IOException...
116		{
117	0	if (/** @j2sNative 1?false: */true) {
118	0	download(urlstring, tempFile.toString());
119		}
120		// JavaScript only
121
122		/** @j2sNative
123		* tempFile._bytes = swingjs.JSUtil.getFileAsBytes(urlstring);
124		*/
125		}
126		}