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  1. Project Clover database Wed Oct 31 2018 15:13:58 GMT
  2. Package jalview.ws.params

File AutoCalcSetting.java

 

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Classes

Class Line # Actions
AutoCalcSetting 25 8 6 14
0.00%
 

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1    /*
2    * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3    * Copyright (C) $$Year-Rel$$ The Jalview Authors
4    *
5    * This file is part of Jalview.
6    *
7    * Jalview is free software: you can redistribute it and/or
8    * modify it under the terms of the GNU General Public License
9    * as published by the Free Software Foundation, either version 3
10    * of the License, or (at your option) any later version.
11    *
12    * Jalview is distributed in the hope that it will be useful, but
13    * WITHOUT ANY WARRANTY; without even the implied warranty
14    * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15    * PURPOSE. See the GNU General Public License for more details.
16    *
17    * You should have received a copy of the GNU General Public License
18    * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19    * The Jalview Authors are detailed in the 'AUTHORS' file.
20    */
21    package jalview.ws.params;
22   
23    import java.util.List;
24   
 
25    public abstract class AutoCalcSetting
26    {
27   
28    protected boolean autoUpdate;
29   
30    protected WsParamSetI preset;
31   
32    protected List<ArgumentI> jobArgset;
33   
 
34  0 toggle public AutoCalcSetting(WsParamSetI preset2, List<ArgumentI> jobArgset2,
35    boolean autoUpdate2)
36    {
37  0 autoUpdate = autoUpdate2;
38  0 preset = preset2;
39  0 jobArgset = jobArgset2;
40    }
41   
 
42  0 toggle public boolean isAutoUpdate()
43    {
44  0 return autoUpdate;
45    }
46   
 
47  0 toggle public void setAutoUpdate(boolean autoUpdate)
48    {
49  0 this.autoUpdate = autoUpdate;
50    }
51   
 
52  0 toggle public WsParamSetI getPreset()
53    {
54  0 return preset;
55    }
56   
 
57  0 toggle public void setPreset(WsParamSetI preset)
58    {
59    // TODO: test if service URL is in presets
60  0 this.preset = preset;
61    }
62   
 
63  0 toggle public List<ArgumentI> getArgumentSet()
64    {
65  0 return jobArgset;
66    }
67   
68    /**
69    *
70    * @return characteristic URI for this service. The URI should reflect the
71    * type and version of this service, enabling the service client code
72    * to recover the correct client for this calculation.
73    */
74    public abstract String getServiceURI();
75   
76    /**
77    * return any concrete service endpoints associated with this calculation.
78    * built in services should return a zero length array
79    *
80    * @return
81    */
82    public abstract String[] getServiceURLs();
83   
84    /**
85    *
86    * @return stringified representation of the parameters for this setting
87    */
88    public abstract String getWsParamFile();
89   
90    }