Classes

Class	Line #	Total Statements	Complexity	Uncovered Elements	TOTAL Coverage	Actions
JabaOption	33	15	13	25	0.00%	Show methods

Class JabaOption

Class JabaOption	Line # 33	Total Statements 15	Complexity 13	Uncovered Elements 25	TOTAL Coverage 0.00%
JabaOption(Option)   JabaOption(Option)	3535	1.01	1.01	1.01	0.0 0.00%
getValue() : String   getValue() : String	4242	1.01	1.01	1.01	0.0 0.00%
getName() : String   getName() : String	4848	1.01	1.01	1.01	0.0 0.00%
getFurtherDetails() : URL   getFurtherDetails() : URL	5454	3.03	3.03	3.03	0.0 0.00%
isRequired() : boolean   isRequired() : boolean	7070	1.01	1.01	1.01	0.0 0.00%
getDescription() : String   getDescription() : String	7676	1.01	1.01	1.01	0.0 0.00%
getPossibleValues() : List<String>   getPossibleValues() : List<String>	8282	1.01	1.01	1.01	0.0 0.00%
setValue(String) : void   setValue(String) : void	8989	4.04	2.02	4.04	0.0 0.00%
copy() : OptionI   copy() : OptionI	103103	1.01	1.01	1.01	0.0 0.00%
getOption() : Option   getOption() : Option	115115	1.01	1.01	1.01	0.0 0.00%

 

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1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.ws.jws2.dm;
22
23		import jalview.util.MessageManager;
24		import jalview.ws.jws2.ParameterUtils;
25		import jalview.ws.params.OptionI;
26
27		import java.net.MalformedURLException;
28		import java.net.URL;
29		import java.util.List;
30
31		import compbio.metadata.Option;
32
		0% Uncovered Elements: 25 (25) Complexity: 13 Complexity Density: 0.87
33		public class JabaOption implements jalview.ws.params.OptionI
34		{
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
35	0	public JabaOption(Option rg)...
36		{
37	0	opt = rg;
38		}
39
40		Option opt;
41
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
42	0	@Override...
43		public String getValue()
44		{
45	0	return opt.getDefaultValue();
46		}
47
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
48	0	@Override...
49		public String getName()
50		{
51	0	return opt.getName();
52		}
53
		0% Uncovered Elements: 3 (3) Complexity: 3 Complexity Density: 1
54	0	@Override...
55		public URL getFurtherDetails()
56		{
57	0	try
58		{
59	0	return new URL(opt.getBasicURL().toExternalForm() + "/"
60		+ opt.getFurtherDetails());
61		} catch (NullPointerException q)
62		{
63		} catch (MalformedURLException q)
64		{
65
66		}
67	0	return null;
68		}
69
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
70	0	@Override...
71		public boolean isRequired()
72		{
73	0	return opt.isRequired();
74		}
75
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
76	0	@Override...
77		public String getDescription()
78		{
79	0	return opt.getDescription();
80		}
81
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
82	0	@Override...
83		public List<String> getPossibleValues()
84		{
85		// TODO: assert typesafety
86	0	return opt.getPossibleValues();
87		}
88
		0% Uncovered Elements: 4 (4) Complexity: 2 Complexity Density: 0.5
89	0	@Override...
90		public void setValue(String selectedItem)
91		{
92	0	try
93		{
94	0	opt.setDefaultValue(selectedItem);
95		} catch (Exception e)
96		{
97	0	e.printStackTrace();
98	0	throw new Error(MessageManager.getString(
99		"error.implementation_error_cannot_set_jaba_option"));
100		}
101		}
102
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
103	0	@Override...
104		public OptionI copy()
105		{
106	0	return new JabaOption(ParameterUtils.copyOption(opt));
107		}
108
109		/**
110		* get the underlying Jaba option or parameter object. Note - use copy first
111		* if you want to modify the value of the option.
112		*
113		* @return
114		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
115	0	public Option getOption()...
116		{
117	0	return opt;
118		}
119
120		}