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  1. Project Clover database Wed Oct 31 2018 15:13:58 GMT
  2. Package jalview.ws.dbsources

File EbiFileRetrievedProxy.java

 

Coverage histogram

../../../img/srcFileCovDistChart0.png
56% of files have more coverage

Code metrics

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Classes

Class Line # Actions
EbiFileRetrievedProxy 29 15 6 22
0.00%
 

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1    /*
2    * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3    * Copyright (C) $$Year-Rel$$ The Jalview Authors
4    *
5    * This file is part of Jalview.
6    *
7    * Jalview is free software: you can redistribute it and/or
8    * modify it under the terms of the GNU General Public License
9    * as published by the Free Software Foundation, either version 3
10    * of the License, or (at your option) any later version.
11    *
12    * Jalview is distributed in the hope that it will be useful, but
13    * WITHOUT ANY WARRANTY; without even the implied warranty
14    * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15    * PURPOSE. See the GNU General Public License for more details.
16    *
17    * You should have received a copy of the GNU General Public License
18    * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19    * The Jalview Authors are detailed in the 'AUTHORS' file.
20    */
21    package jalview.ws.dbsources;
22   
23    import jalview.ws.seqfetcher.DbSourceProxyImpl;
24   
25    import java.io.BufferedReader;
26    import java.io.File;
27    import java.io.FileReader;
28   
 
29    public abstract class EbiFileRetrievedProxy extends DbSourceProxyImpl
30    {
31   
32    /**
33    * temp path to retrieved file
34    */
35    protected String file = null;
36   
 
37  0 toggle public StringBuffer getRawRecords()
38    {
39  0 if (file == null)
40    {
41  0 return null;
42    }
43  0 StringBuffer bf = null;
44  0 try
45    {
46  0 File f = new File(file);
47  0 if (f.exists())
48    {
49  0 bf = new StringBuffer();
50  0 BufferedReader breader = new BufferedReader(new FileReader(f));
51  0 String line = null;
52  0 while (breader.ready() && (line = breader.readLine()) != null)
53    {
54  0 bf.append(line);
55    }
56  0 breader.close();
57    }
58    } catch (Exception e)
59    {
60  0 System.err.println("Warning: problems reading temp file " + file);
61  0 return null;
62    }
63  0 return bf;
64    }
65   
66    }