jalviewX
File AnnotationFilterParameter.java
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Classes
| Class | Line # | Actions | ||||
|---|---|---|---|---|---|---|
| AnnotationFilterParameter | 26 | 14 | 14 | 0 | ||
| AnnotationFilterParameter.ThresholdType | 28 | 0 | 0 | 0 | ||
| AnnotationFilterParameter.SearchableAnnotationField | 33 | 0 | 0 | 0 |
Contributing tests
This file is covered by 2 tests.
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| 1 | /* | |
| 2 | * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) | |
| 3 | * Copyright (C) $$Year-Rel$$ The Jalview Authors | |
| 4 | * | |
| 5 | * This file is part of Jalview. | |
| 6 | * | |
| 7 | * Jalview is free software: you can redistribute it and/or | |
| 8 | * modify it under the terms of the GNU General Public License | |
| 9 | * as published by the Free Software Foundation, either version 3 | |
| 10 | * of the License, or (at your option) any later version. | |
| 11 | * | |
| 12 | * Jalview is distributed in the hope that it will be useful, but | |
| 13 | * WITHOUT ANY WARRANTY; without even the implied warranty | |
| 14 | * of MERCHANTABILITY or FITNESS FOR A PARTICULAR | |
| 15 | * PURPOSE. See the GNU General Public License for more details. | |
| 16 | * | |
| 17 | * You should have received a copy of the GNU General Public License | |
| 18 | * along with Jalview. If not, see <http://www.gnu.org/licenses/>. | |
| 19 | * The Jalview Authors are detailed in the 'AUTHORS' file. | |
| 20 | */ | |
| 21 | package jalview.viewmodel.annotationfilter; | |
| 22 | ||
| 23 | import java.util.ArrayList; | |
| 24 | import java.util.List; | |
| 25 | ||
| 26 | public class AnnotationFilterParameter | |
| 27 | { | |
| 28 | public enum ThresholdType | |
| 29 | { | |
| 30 | NO_THRESHOLD, BELOW_THRESHOLD, ABOVE_THRESHOLD; | |
| 31 | } | |
| 32 | ||
| 33 | public enum SearchableAnnotationField | |
| 34 | { | |
| 35 | DISPLAY_STRING, DESCRIPTION; | |
| 36 | } | |
| 37 | ||
| 38 | private ThresholdType thresholdType; | |
| 39 | ||
| 40 | private float thresholdValue; | |
| 41 | ||
| 42 | private boolean filterAlphaHelix = false; | |
| 43 | ||
| 44 | private boolean filterBetaSheet = false; | |
| 45 | ||
| 46 | private boolean filterTurn = false; | |
| 47 | ||
| 48 | private String regexString; | |
| 49 | ||
| 50 | private List<SearchableAnnotationField> regexSearchFields = new ArrayList<SearchableAnnotationField>(); | |
| 51 | ||
| 52 | 88 |  public ThresholdType getThresholdType() |
| 53 | { | |
| 54 | 88 | return thresholdType; |
| 55 | } | |
| 56 | ||
| 57 | 3 | public void setThresholdType(ThresholdType thresholdType) |
| 58 | { | |
| 59 | 3 | this.thresholdType = thresholdType; |
| 60 | } | |
| 61 | ||
| 62 | 16 | public float getThresholdValue() |
| 63 | { | |
| 64 | 16 | return thresholdValue; |
| 65 | } | |
| 66 | ||
| 67 | 2 | public void setThresholdValue(float thresholdValue) |
| 68 | { | |
| 69 | 2 | this.thresholdValue = thresholdValue; |
| 70 | } | |
| 71 | ||
| 72 | 45 | public String getRegexString() |
| 73 | { | |
| 74 | 45 | return regexString; |
| 75 | } | |
| 76 | ||
| 77 | 2 | public void setRegexString(String regexString) |
| 78 | { | |
| 79 | 2 | this.regexString = regexString; |
| 80 | } | |
| 81 | ||
| 82 | 4 | public List<SearchableAnnotationField> getRegexSearchFields() |
| 83 | { | |
| 84 | 4 | return regexSearchFields; |
| 85 | } | |
| 86 | ||
| 87 | 2 | public void addRegexSearchField( |
| 88 | SearchableAnnotationField regexSearchField) | |
| 89 | { | |
| 90 | 2 | this.regexSearchFields.add(regexSearchField); |
| 91 | } | |
| 92 | ||
| 93 | 40 | public boolean isFilterAlphaHelix() |
| 94 | { | |
| 95 | 40 | return filterAlphaHelix; |
| 96 | } | |
| 97 | ||
| 98 | 3 | public void setFilterAlphaHelix(boolean alphaHelix) |
| 99 | { | |
| 100 | 3 | this.filterAlphaHelix = alphaHelix; |
| 101 | } | |
| 102 | ||
| 103 | 37 | public boolean isFilterBetaSheet() |
| 104 | { | |
| 105 | 37 | return filterBetaSheet; |
| 106 | } | |
| 107 | ||
| 108 | 1 | public void setFilterBetaSheet(boolean betaSheet) |
| 109 | { | |
| 110 | 1 | this.filterBetaSheet = betaSheet; |
| 111 | } | |
| 112 | ||
| 113 | 35 | public boolean isFilterTurn() |
| 114 | { | |
| 115 | 35 | return filterTurn; |
| 116 | } | |
| 117 | ||
| 118 | 1 | public void setFilterTurn(boolean turn) |
| 119 | { | |
| 120 | 1 | this.filterTurn = turn; |
| 121 | } | |
| 122 | ||
| 123 | } |