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package jalview.schemabinding.version2; |
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import org.exolab.castor.xml.Marshaller; |
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import org.exolab.castor.xml.Unmarshaller; |
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@version |
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| 65.1% |
Uncovered Elements: 38 (109) |
Complexity: 49 |
Complexity Density: 0.8 |
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public class StructureState implements java.io.Serializable |
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{ |
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private java.lang.String _content = ""; |
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private boolean _visible; |
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private boolean _has_visible; |
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private java.lang.String _viewId; |
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private boolean _alignwithAlignPanel = true; |
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private boolean _has_alignwithAlignPanel; |
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private boolean _colourwithAlignPanel = false; |
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private boolean _has_colourwithAlignPanel; |
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private boolean _colourByJmol = true; |
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private boolean _has_colourByJmol; |
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private java.lang.String _type; |
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private int _width; |
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private boolean _has_width; |
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private int _height; |
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private boolean _has_height; |
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private int _xpos; |
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private boolean _has_xpos; |
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private int _ypos; |
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private boolean _has_ypos; |
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| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
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public StructureState()... |
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{ |
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super(); |
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setContent(""); |
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} |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
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public void deleteAlignwithAlignPanel()... |
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{ |
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this._has_alignwithAlignPanel = false; |
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} |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
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public void deleteColourByJmol()... |
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{ |
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this._has_colourByJmol = false; |
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} |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
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public void deleteColourwithAlignPanel()... |
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{ |
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this._has_colourwithAlignPanel = false; |
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} |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
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public void deleteHeight()... |
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{ |
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this._has_height = false; |
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} |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
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public void deleteVisible()... |
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{ |
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this._has_visible = false; |
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} |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
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public void deleteWidth()... |
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{ |
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this._has_width = false; |
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} |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
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public void deleteXpos()... |
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{ |
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this._has_xpos = false; |
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} |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
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public void deleteYpos()... |
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{ |
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this._has_ypos = false; |
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} |
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@return |
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| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
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public boolean getAlignwithAlignPanel()... |
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{ |
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return this._alignwithAlignPanel; |
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} |
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@return |
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| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
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public boolean getColourByJmol()... |
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{ |
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return this._colourByJmol; |
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} |
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@return |
242 |
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| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
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public boolean getColourwithAlignPanel()... |
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{ |
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return this._colourwithAlignPanel; |
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} |
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@return |
253 |
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| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
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public java.lang.String getContent()... |
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{ |
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return this._content; |
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} |
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262 |
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@return |
263 |
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| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
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public int getHeight()... |
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{ |
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return this._height; |
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} |
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@return |
276 |
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| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
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public java.lang.String getType()... |
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{ |
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return this._type; |
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} |
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@return |
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| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
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public java.lang.String getViewId()... |
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{ |
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return this._viewId; |
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} |
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@return |
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| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
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public boolean getVisible()... |
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{ |
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return this._visible; |
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} |
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@return |
312 |
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| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
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public int getWidth()... |
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{ |
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return this._width; |
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} |
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@return |
322 |
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| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
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160 |
public int getXpos()... |
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{ |
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return this._xpos; |
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} |
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@return |
332 |
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| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
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public int getYpos()... |
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{ |
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return this._ypos; |
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} |
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@return |
342 |
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| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
343 |
160 |
public boolean hasAlignwithAlignPanel()... |
344 |
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{ |
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return this._has_alignwithAlignPanel; |
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} |
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@return |
352 |
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| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
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160 |
public boolean hasColourByJmol()... |
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{ |
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return this._has_colourByJmol; |
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} |
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@return |
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| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
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public boolean hasColourwithAlignPanel()... |
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{ |
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return this._has_colourwithAlignPanel; |
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} |
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@return |
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| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
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40 |
public boolean hasHeight()... |
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{ |
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return this._has_height; |
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} |
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@return |
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| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
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40 |
public boolean hasVisible()... |
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{ |
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return this._has_visible; |
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} |
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389 |
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@return |
392 |
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| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
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40 |
public boolean hasWidth()... |
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{ |
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return this._has_width; |
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} |
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@return |
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| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
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public boolean hasXpos()... |
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{ |
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return this._has_xpos; |
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} |
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@return |
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| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
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public boolean hasYpos()... |
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{ |
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return this._has_ypos; |
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} |
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422 |
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423 |
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@return |
426 |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
427 |
0 |
public boolean isAlignwithAlignPanel()... |
428 |
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{ |
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return this._alignwithAlignPanel; |
430 |
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} |
431 |
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432 |
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433 |
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434 |
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435 |
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437 |
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@return |
439 |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
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0 |
public boolean isColourByJmol()... |
441 |
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{ |
442 |
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return this._colourByJmol; |
443 |
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} |
444 |
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452 |
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@return |
453 |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
454 |
0 |
public boolean isColourwithAlignPanel()... |
455 |
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{ |
456 |
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return this._colourwithAlignPanel; |
457 |
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} |
458 |
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459 |
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460 |
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461 |
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462 |
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@return |
463 |
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| 0% |
Uncovered Elements: 4 (4) |
Complexity: 2 |
Complexity Density: 0.5 |
|
464 |
0 |
public boolean isValid()... |
465 |
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{ |
466 |
0 |
try |
467 |
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{ |
468 |
0 |
validate(); |
469 |
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} catch (org.exolab.castor.xml.ValidationException vex) |
470 |
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{ |
471 |
0 |
return false; |
472 |
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} |
473 |
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return true; |
474 |
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} |
475 |
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476 |
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477 |
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478 |
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479 |
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@return |
480 |
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|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
481 |
0 |
public boolean isVisible()... |
482 |
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{ |
483 |
0 |
return this._visible; |
484 |
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} |
485 |
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486 |
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487 |
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488 |
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489 |
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@param |
490 |
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@throws |
491 |
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492 |
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493 |
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@throws |
494 |
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495 |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
496 |
0 |
public void marshal(final java.io.Writer out)... |
497 |
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throws org.exolab.castor.xml.MarshalException, |
498 |
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org.exolab.castor.xml.ValidationException |
499 |
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{ |
500 |
0 |
Marshaller.marshal(this, out); |
501 |
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} |
502 |
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503 |
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504 |
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505 |
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506 |
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@param |
507 |
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@throws |
508 |
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509 |
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@throws |
510 |
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511 |
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@throws |
512 |
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513 |
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|
514 |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
515 |
0 |
public void marshal(final org.xml.sax.ContentHandler handler)... |
516 |
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throws java.io.IOException, |
517 |
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org.exolab.castor.xml.MarshalException, |
518 |
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org.exolab.castor.xml.ValidationException |
519 |
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{ |
520 |
0 |
Marshaller.marshal(this, handler); |
521 |
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} |
522 |
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523 |
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524 |
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525 |
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526 |
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527 |
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528 |
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|
529 |
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|
530 |
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@param |
531 |
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|
532 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
533 |
140 |
public void setAlignwithAlignPanel(final boolean alignwithAlignPanel)... |
534 |
|
{ |
535 |
140 |
this._alignwithAlignPanel = alignwithAlignPanel; |
536 |
140 |
this._has_alignwithAlignPanel = true; |
537 |
|
} |
538 |
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|
539 |
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|
540 |
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|
541 |
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|
542 |
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|
543 |
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|
544 |
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|
545 |
|
@param |
546 |
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|
547 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
548 |
140 |
public void setColourByJmol(final boolean colourByJmol)... |
549 |
|
{ |
550 |
140 |
this._colourByJmol = colourByJmol; |
551 |
140 |
this._has_colourByJmol = true; |
552 |
|
} |
553 |
|
|
554 |
|
|
555 |
|
|
556 |
|
|
557 |
|
|
558 |
|
|
559 |
|
|
560 |
|
|
561 |
|
@param |
562 |
|
|
563 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
564 |
140 |
public void setColourwithAlignPanel(final boolean colourwithAlignPanel)... |
565 |
|
{ |
566 |
140 |
this._colourwithAlignPanel = colourwithAlignPanel; |
567 |
140 |
this._has_colourwithAlignPanel = true; |
568 |
|
} |
569 |
|
|
570 |
|
|
571 |
|
|
572 |
|
|
573 |
|
|
574 |
|
@param |
575 |
|
|
576 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
577 |
240 |
public void setContent(final java.lang.String content)... |
578 |
|
{ |
579 |
240 |
this._content = content; |
580 |
|
} |
581 |
|
|
582 |
|
|
583 |
|
|
584 |
|
|
585 |
|
@param |
586 |
|
|
587 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
588 |
140 |
public void setHeight(final int height)... |
589 |
|
{ |
590 |
140 |
this._height = height; |
591 |
140 |
this._has_height = true; |
592 |
|
} |
593 |
|
|
594 |
|
|
595 |
|
|
596 |
|
|
597 |
|
|
598 |
|
|
599 |
|
|
600 |
|
@param |
601 |
|
|
602 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
603 |
40 |
public void setType(final java.lang.String type)... |
604 |
|
{ |
605 |
40 |
this._type = type; |
606 |
|
} |
607 |
|
|
608 |
|
|
609 |
|
|
610 |
|
|
611 |
|
|
612 |
|
|
613 |
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|
614 |
|
|
615 |
|
|
616 |
|
|
617 |
|
@param |
618 |
|
|
619 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
620 |
140 |
public void setViewId(final java.lang.String viewId)... |
621 |
|
{ |
622 |
140 |
this._viewId = viewId; |
623 |
|
} |
624 |
|
|
625 |
|
|
626 |
|
|
627 |
|
|
628 |
|
@param |
629 |
|
|
630 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
631 |
140 |
public void setVisible(final boolean visible)... |
632 |
|
{ |
633 |
140 |
this._visible = visible; |
634 |
140 |
this._has_visible = true; |
635 |
|
} |
636 |
|
|
637 |
|
|
638 |
|
|
639 |
|
|
640 |
|
@param |
641 |
|
|
642 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
643 |
140 |
public void setWidth(final int width)... |
644 |
|
{ |
645 |
140 |
this._width = width; |
646 |
140 |
this._has_width = true; |
647 |
|
} |
648 |
|
|
649 |
|
|
650 |
|
|
651 |
|
|
652 |
|
@param |
653 |
|
|
654 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
655 |
140 |
public void setXpos(final int xpos)... |
656 |
|
{ |
657 |
140 |
this._xpos = xpos; |
658 |
140 |
this._has_xpos = true; |
659 |
|
} |
660 |
|
|
661 |
|
|
662 |
|
|
663 |
|
|
664 |
|
@param |
665 |
|
|
666 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
667 |
140 |
public void setYpos(final int ypos)... |
668 |
|
{ |
669 |
140 |
this._ypos = ypos; |
670 |
140 |
this._has_ypos = true; |
671 |
|
} |
672 |
|
|
673 |
|
|
674 |
|
|
675 |
|
|
676 |
|
@param |
677 |
|
@throws |
678 |
|
|
679 |
|
|
680 |
|
@throws |
681 |
|
|
682 |
|
@return |
683 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
684 |
0 |
public static jalview.schemabinding.version2.StructureState unmarshal(... |
685 |
|
final java.io.Reader reader) |
686 |
|
throws org.exolab.castor.xml.MarshalException, |
687 |
|
org.exolab.castor.xml.ValidationException |
688 |
|
{ |
689 |
0 |
return (jalview.schemabinding.version2.StructureState) Unmarshaller |
690 |
|
.unmarshal(jalview.schemabinding.version2.StructureState.class, |
691 |
|
reader); |
692 |
|
} |
693 |
|
|
694 |
|
|
695 |
|
|
696 |
|
|
697 |
|
@throws |
698 |
|
|
699 |
|
|
|
|
| 0% |
Uncovered Elements: 2 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
700 |
0 |
public void validate() throws org.exolab.castor.xml.ValidationException... |
701 |
|
{ |
702 |
0 |
org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator(); |
703 |
0 |
validator.validate(this); |
704 |
|
} |
705 |
|
|
706 |
|
} |