Classes

Class	Line #	Total Statements	Complexity	Uncovered Elements	TOTAL Coverage	Actions
RnaViewer	26	65	51	116	0.00%	Show methods

Class RnaViewer

Class RnaViewer	Line # 26	Total Statements 65	Complexity 51	Uncovered Elements 116	TOTAL Coverage 0.00%
RnaViewer()   RnaViewer()	115115	2.02	1.01	2.02	0.0 0.00%
addSecondaryStructure(jalview.schemabinding.version2.SecondaryStructure) : void   addSecondaryStructure(jalview.schemabinding.version2.SecondaryStructure) : void	132132	1.01	1.01	1.01	0.0 0.00%
addSecondaryStructure(int,jalview.schemabinding.version2.SecondaryStructure) : void   addSecondaryStructure(int,jalview.schemabinding.version2.SecondaryStructure) : void	147147	1.01	1.01	1.01	0.0 0.00%
deleteDividerLocation() : void   deleteDividerLocation() : void	157157	1.01	1.01	1.01	0.0 0.00%
deleteHeight() : void   deleteHeight() : void	164164	1.01	1.01	1.01	0.0 0.00%
deleteSelectedRna() : void   deleteSelectedRna() : void	171171	1.01	1.01	1.01	0.0 0.00%
deleteWidth() : void   deleteWidth() : void	178178	1.01	1.01	1.01	0.0 0.00%
deleteXpos() : void   deleteXpos() : void	185185	1.01	1.01	1.01	0.0 0.00%
deleteYpos() : void   deleteYpos() : void	192192	1.01	1.01	1.01	0.0 0.00%
enumerateSecondaryStructure() : java.util.Enumeration   enumerateSecondaryStructure() : java.util.Enumeration	203203	1.01	1.01	1.01	0.0 0.00%
getDividerLocation() : int   getDividerLocation() : int	215215	1.01	1.01	1.01	0.0 0.00%
getHeight() : int   getHeight() : int	225225	1.01	1.01	1.01	0.0 0.00%
getSecondaryStructure(int) : jalview.schemabinding.version2.SecondaryStructure   getSecondaryStructure(int) : jalview.schemabinding.version2.SecondaryStructure	239239	3.03	3.03	5.05	0.0 0.00%
getSecondaryStructure() : jalview.schemabinding.version2.SecondaryStructure[]   getSecondaryStructure() : jalview.schemabinding.version2.SecondaryStructure[]	265265	2.02	1.01	2.02	0.0 0.00%
getSecondaryStructureCount() : int   getSecondaryStructureCount() : int	277277	1.01	1.01	1.01	0.0 0.00%
getSelectedRna() : int   getSelectedRna() : int	289289	1.01	1.01	1.01	0.0 0.00%
getTitle() : java.lang.String   getTitle() : java.lang.String	299299	1.01	1.01	1.01	0.0 0.00%
getViewId() : java.lang.String   getViewId() : java.lang.String	311311	1.01	1.01	1.01	0.0 0.00%
getWidth() : int   getWidth() : int	321321	1.01	1.01	1.01	0.0 0.00%
getXpos() : int   getXpos() : int	331331	1.01	1.01	1.01	0.0 0.00%
getYpos() : int   getYpos() : int	341341	1.01	1.01	1.01	0.0 0.00%
hasDividerLocation() : boolean   hasDividerLocation() : boolean	351351	1.01	1.01	1.01	0.0 0.00%
hasHeight() : boolean   hasHeight() : boolean	361361	1.01	1.01	1.01	0.0 0.00%
hasSelectedRna() : boolean   hasSelectedRna() : boolean	371371	1.01	1.01	1.01	0.0 0.00%
hasWidth() : boolean   hasWidth() : boolean	381381	1.01	1.01	1.01	0.0 0.00%
hasXpos() : boolean   hasXpos() : boolean	391391	1.01	1.01	1.01	0.0 0.00%
hasYpos() : boolean   hasYpos() : boolean	401401	1.01	1.01	1.01	0.0 0.00%
isValid() : boolean   isValid() : boolean	411411	4.04	2.02	4.04	0.0 0.00%
marshal(java.io.Writer) : void   marshal(java.io.Writer) : void	433433	1.01	1.01	1.01	0.0 0.00%
marshal(org.xml.sax.ContentHandler) : void   marshal(org.xml.sax.ContentHandler) : void	452452	1.01	1.01	1.01	0.0 0.00%
removeAllSecondaryStructure() : void   removeAllSecondaryStructure() : void	462462	1.01	1.01	1.01	0.0 0.00%
removeSecondaryStructure(jalview.schemabinding.version2.SecondaryStructure) : boolean   removeSecondaryStructure(jalview.schemabinding.version2.SecondaryStructure) : boolean	473473	2.02	1.01	2.02	0.0 0.00%
removeSecondaryStructureAt(int) : jalview.schemabinding.version2.SecondaryStructure   removeSecondaryStructureAt(int) : jalview.schemabinding.version2.SecondaryStructure	486486	2.02	1.01	2.02	0.0 0.00%
setDividerLocation(int) : void   setDividerLocation(int) : void	501501	2.02	1.01	2.02	0.0 0.00%
setHeight(int) : void   setHeight(int) : void	513513	2.02	1.01	2.02	0.0 0.00%
setSecondaryStructure(int,jalview.schemabinding.version2.SecondaryStructure) : void   setSecondaryStructure(int,jalview.schemabinding.version2.SecondaryStructure) : void	527527	3.03	3.03	5.05	0.0 0.00%
setSecondaryStructure(jalview.schemabinding.version2.SecondaryStructure[]) : void   setSecondaryStructure(jalview.schemabinding.version2.SecondaryStructure[]) : void	549549	3.03	2.02	5.05	0.0 0.00%
setSelectedRna(int) : void   setSelectedRna(int) : void	569569	2.02	1.01	2.02	0.0 0.00%
setTitle(java.lang.String) : void   setTitle(java.lang.String) : void	581581	1.01	1.01	1.01	0.0 0.00%
setViewId(java.lang.String) : void   setViewId(java.lang.String) : void	594594	1.01	1.01	1.01	0.0 0.00%
setWidth(int) : void   setWidth(int) : void	605605	2.02	1.01	2.02	0.0 0.00%
setXpos(int) : void   setXpos(int) : void	617617	2.02	1.01	2.02	0.0 0.00%
setYpos(int) : void   setYpos(int) : void	629629	2.02	1.01	2.02	0.0 0.00%
unmarshal(java.io.Reader) : jalview.schemabinding.version2.RnaViewer   unmarshal(java.io.Reader) : jalview.schemabinding.version2.RnaViewer	646646	1.01	1.01	1.01	0.0 0.00%
validate() : void   validate() : void	662662	2.02	1.01	2.02	0.0 0.00%

 

Contributing tests

Source view

1		/*
2		* This class was automatically generated with
3		* <a href="http://www.castor.org">Castor 1.1</a>, using an XML
4		* Schema.
5		* $Id$
6		*/
7
8		package jalview.schemabinding.version2;
9
10		//---------------------------------/
11		//- Imported classes and packages -/
12		//---------------------------------/
13
14		import org.exolab.castor.xml.Marshaller;
15		import org.exolab.castor.xml.Unmarshaller;
16
17		/**
18		* Reference to a viewer showing RNA structure for this sequence. Schema
19		* supports one viewer showing multiple annotations for multiple sequences,
20		* though currently only one annotation for one sequence (gapped or trimmed) is
21		* used
22		*
23		*
24		* @version $Revision$ $Date$
25		*/
		0% Uncovered Elements: 116 (116) Complexity: 51 Complexity Density: 0.78
26		public class RnaViewer implements java.io.Serializable
27		{
28
29		// --------------------------/
30		// - Class/Member Variables -/
31		// --------------------------/
32
33		/**
34		* Field _title.
35		*/
36		private java.lang.String _title;
37
38		/**
39		* An id unique to the RNA viewer panel
40		*
41		*/
42		private java.lang.String _viewId;
43
44		/**
45		* horizontal position of split pane divider
46		*
47		*/
48		private int _dividerLocation;
49
50		/**
51		* keeps track of state for field: _dividerLocation
52		*/
53		private boolean _has_dividerLocation;
54
55		/**
56		* Index of the selected structure in the viewer panel
57		*
58		*/
59		private int _selectedRna;
60
61		/**
62		* keeps track of state for field: _selectedRna
63		*/
64		private boolean _has_selectedRna;
65
66		/**
67		* Field _width.
68		*/
69		private int _width;
70
71		/**
72		* keeps track of state for field: _width
73		*/
74		private boolean _has_width;
75
76		/**
77		* Field _height.
78		*/
79		private int _height;
80
81		/**
82		* keeps track of state for field: _height
83		*/
84		private boolean _has_height;
85
86		/**
87		* Field _xpos.
88		*/
89		private int _xpos;
90
91		/**
92		* keeps track of state for field: _xpos
93		*/
94		private boolean _has_xpos;
95
96		/**
97		* Field _ypos.
98		*/
99		private int _ypos;
100
101		/**
102		* keeps track of state for field: _ypos
103		*/
104		private boolean _has_ypos;
105
106		/**
107		* Field _secondaryStructureList.
108		*/
109		private java.util.Vector _secondaryStructureList;
110
111		// ----------------/
112		// - Constructors -/
113		// ----------------/
114
		0% Uncovered Elements: 2 (2) Complexity: 1 Complexity Density: 0.5
115	0	public RnaViewer()...
116		{
117	0	super();
118	0	this._secondaryStructureList = new java.util.Vector();
119		}
120
121		// -----------/
122		// - Methods -/
123		// -----------/
124
125		/**
126		*
127		*
128		* @param vSecondaryStructure
129		* @throws java.lang.IndexOutOfBoundsException
130		* if the index given is outside the bounds of the collection
131		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
132	0	public void addSecondaryStructure(...
133		final jalview.schemabinding.version2.SecondaryStructure vSecondaryStructure)
134		throws java.lang.IndexOutOfBoundsException
135		{
136	0	this._secondaryStructureList.addElement(vSecondaryStructure);
137		}
138
139		/**
140		*
141		*
142		* @param index
143		* @param vSecondaryStructure
144		* @throws java.lang.IndexOutOfBoundsException
145		* if the index given is outside the bounds of the collection
146		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
147	0	public void addSecondaryStructure(...
148		final int index,
149		final jalview.schemabinding.version2.SecondaryStructure vSecondaryStructure)
150		throws java.lang.IndexOutOfBoundsException
151		{
152	0	this._secondaryStructureList.add(index, vSecondaryStructure);
153		}
154
155		/**
156		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
157	0	public void deleteDividerLocation()...
158		{
159	0	this._has_dividerLocation = false;
160		}
161
162		/**
163		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
164	0	public void deleteHeight()...
165		{
166	0	this._has_height = false;
167		}
168
169		/**
170		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
171	0	public void deleteSelectedRna()...
172		{
173	0	this._has_selectedRna = false;
174		}
175
176		/**
177		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
178	0	public void deleteWidth()...
179		{
180	0	this._has_width = false;
181		}
182
183		/**
184		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
185	0	public void deleteXpos()...
186		{
187	0	this._has_xpos = false;
188		}
189
190		/**
191		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
192	0	public void deleteYpos()...
193		{
194	0	this._has_ypos = false;
195		}
196
197		/**
198		* Method enumerateSecondaryStructure.
199		*
200		* @return an Enumeration over all
201		* jalview.schemabinding.version2.SecondaryStructure elements
202		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
203	0	public java.util.Enumeration enumerateSecondaryStructure()...
204		{
205	0	return this._secondaryStructureList.elements();
206		}
207
208		/**
209		* Returns the value of field 'dividerLocation'. The field 'dividerLocation'
210		* has the following description: horizontal position of split pane divider
211		*
212		*
213		* @return the value of field 'DividerLocation'.
214		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
215	0	public int getDividerLocation()...
216		{
217	0	return this._dividerLocation;
218		}
219
220		/**
221		* Returns the value of field 'height'.
222		*
223		* @return the value of field 'Height'.
224		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
225	0	public int getHeight()...
226		{
227	0	return this._height;
228		}
229
230		/**
231		* Method getSecondaryStructure.
232		*
233		* @param index
234		* @throws java.lang.IndexOutOfBoundsException
235		* if the index given is outside the bounds of the collection
236		* @return the value of the jalview.schemabinding.version2.SecondaryStructure
237		* at the given index
238		*/
		0% Uncovered Elements: 5 (5) Complexity: 3 Complexity Density: 1
239	0	public jalview.schemabinding.version2.SecondaryStructure getSecondaryStructure(...
240		final int index) throws java.lang.IndexOutOfBoundsException
241		{
242		// check bounds for index
243	0	if (index < 0 || index >= this._secondaryStructureList.size())
244		{
245	0	throw new IndexOutOfBoundsException(
246		"getSecondaryStructure: Index value '" + index
247		+ "' not in range [0.."
248		+ (this._secondaryStructureList.size() - 1) + "]");
249		}
250
251	0	return (jalview.schemabinding.version2.SecondaryStructure) _secondaryStructureList
252		.get(index);
253		}
254
255		/**
256		* Method getSecondaryStructure.Returns the contents of the collection in an
257		* Array.
258		* <p>
259		* Note: Just in case the collection contents are changing in another thread,
260		* we pass a 0-length Array of the correct type into the API call. This way we
261		* <i>know</i> that the Array returned is of exactly the correct length.
262		*
263		* @return this collection as an Array
264		*/
		0% Uncovered Elements: 2 (2) Complexity: 1 Complexity Density: 0.5
265	0	public jalview.schemabinding.version2.SecondaryStructure[] getSecondaryStructure()...
266		{
267	0	jalview.schemabinding.version2.SecondaryStructure[] array = new jalview.schemabinding.version2.SecondaryStructure[0];
268	0	return (jalview.schemabinding.version2.SecondaryStructure[]) this._secondaryStructureList
269		.toArray(array);
270		}
271
272		/**
273		* Method getSecondaryStructureCount.
274		*
275		* @return the size of this collection
276		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
277	0	public int getSecondaryStructureCount()...
278		{
279	0	return this._secondaryStructureList.size();
280		}
281
282		/**
283		* Returns the value of field 'selectedRna'. The field 'selectedRna' has the
284		* following description: Index of the selected structure in the viewer panel
285		*
286		*
287		* @return the value of field 'SelectedRna'.
288		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
289	0	public int getSelectedRna()...
290		{
291	0	return this._selectedRna;
292		}
293
294		/**
295		* Returns the value of field 'title'.
296		*
297		* @return the value of field 'Title'.
298		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
299	0	public java.lang.String getTitle()...
300		{
301	0	return this._title;
302		}
303
304		/**
305		* Returns the value of field 'viewId'. The field 'viewId' has the following
306		* description: An id unique to the RNA viewer panel
307		*
308		*
309		* @return the value of field 'ViewId'.
310		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
311	0	public java.lang.String getViewId()...
312		{
313	0	return this._viewId;
314		}
315
316		/**
317		* Returns the value of field 'width'.
318		*
319		* @return the value of field 'Width'.
320		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
321	0	public int getWidth()...
322		{
323	0	return this._width;
324		}
325
326		/**
327		* Returns the value of field 'xpos'.
328		*
329		* @return the value of field 'Xpos'.
330		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
331	0	public int getXpos()...
332		{
333	0	return this._xpos;
334		}
335
336		/**
337		* Returns the value of field 'ypos'.
338		*
339		* @return the value of field 'Ypos'.
340		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
341	0	public int getYpos()...
342		{
343	0	return this._ypos;
344		}
345
346		/**
347		* Method hasDividerLocation.
348		*
349		* @return true if at least one DividerLocation has been added
350		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
351	0	public boolean hasDividerLocation()...
352		{
353	0	return this._has_dividerLocation;
354		}
355
356		/**
357		* Method hasHeight.
358		*
359		* @return true if at least one Height has been added
360		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
361	0	public boolean hasHeight()...
362		{
363	0	return this._has_height;
364		}
365
366		/**
367		* Method hasSelectedRna.
368		*
369		* @return true if at least one SelectedRna has been added
370		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
371	0	public boolean hasSelectedRna()...
372		{
373	0	return this._has_selectedRna;
374		}
375
376		/**
377		* Method hasWidth.
378		*
379		* @return true if at least one Width has been added
380		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
381	0	public boolean hasWidth()...
382		{
383	0	return this._has_width;
384		}
385
386		/**
387		* Method hasXpos.
388		*
389		* @return true if at least one Xpos has been added
390		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
391	0	public boolean hasXpos()...
392		{
393	0	return this._has_xpos;
394		}
395
396		/**
397		* Method hasYpos.
398		*
399		* @return true if at least one Ypos has been added
400		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
401	0	public boolean hasYpos()...
402		{
403	0	return this._has_ypos;
404		}
405
406		/**
407		* Method isValid.
408		*
409		* @return true if this object is valid according to the schema
410		*/
		0% Uncovered Elements: 4 (4) Complexity: 2 Complexity Density: 0.5
411	0	public boolean isValid()...
412		{
413	0	try
414		{
415	0	validate();
416		} catch (org.exolab.castor.xml.ValidationException vex)
417		{
418	0	return false;
419		}
420	0	return true;
421		}
422
423		/**
424		*
425		*
426		* @param out
427		* @throws org.exolab.castor.xml.MarshalException
428		* if object is null or if any SAXException is thrown during
429		* marshaling
430		* @throws org.exolab.castor.xml.ValidationException
431		* if this object is an invalid instance according to the schema
432		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
433	0	public void marshal(final java.io.Writer out)...
434		throws org.exolab.castor.xml.MarshalException,
435		org.exolab.castor.xml.ValidationException
436		{
437	0	Marshaller.marshal(this, out);
438		}
439
440		/**
441		*
442		*
443		* @param handler
444		* @throws java.io.IOException
445		* if an IOException occurs during marshaling
446		* @throws org.exolab.castor.xml.ValidationException
447		* if this object is an invalid instance according to the schema
448		* @throws org.exolab.castor.xml.MarshalException
449		* if object is null or if any SAXException is thrown during
450		* marshaling
451		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
452	0	public void marshal(final org.xml.sax.ContentHandler handler)...
453		throws java.io.IOException,
454		org.exolab.castor.xml.MarshalException,
455		org.exolab.castor.xml.ValidationException
456		{
457	0	Marshaller.marshal(this, handler);
458		}
459
460		/**
461		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
462	0	public void removeAllSecondaryStructure()...
463		{
464	0	this._secondaryStructureList.clear();
465		}
466
467		/**
468		* Method removeSecondaryStructure.
469		*
470		* @param vSecondaryStructure
471		* @return true if the object was removed from the collection.
472		*/
		0% Uncovered Elements: 2 (2) Complexity: 1 Complexity Density: 0.5
473	0	public boolean removeSecondaryStructure(...
474		final jalview.schemabinding.version2.SecondaryStructure vSecondaryStructure)
475		{
476	0	boolean removed = _secondaryStructureList.remove(vSecondaryStructure);
477	0	return removed;
478		}
479
480		/**
481		* Method removeSecondaryStructureAt.
482		*
483		* @param index
484		* @return the element removed from the collection
485		*/
		0% Uncovered Elements: 2 (2) Complexity: 1 Complexity Density: 0.5
486	0	public jalview.schemabinding.version2.SecondaryStructure removeSecondaryStructureAt(...
487		final int index)
488		{
489	0	java.lang.Object obj = this._secondaryStructureList.remove(index);
490	0	return (jalview.schemabinding.version2.SecondaryStructure) obj;
491		}
492
493		/**
494		* Sets the value of field 'dividerLocation'. The field 'dividerLocation' has
495		* the following description: horizontal position of split pane divider
496		*
497		*
498		* @param dividerLocation
499		* the value of field 'dividerLocation'.
500		*/
		0% Uncovered Elements: 2 (2) Complexity: 1 Complexity Density: 0.5
501	0	public void setDividerLocation(final int dividerLocation)...
502		{
503	0	this._dividerLocation = dividerLocation;
504	0	this._has_dividerLocation = true;
505		}
506
507		/**
508		* Sets the value of field 'height'.
509		*
510		* @param height
511		* the value of field 'height'.
512		*/
		0% Uncovered Elements: 2 (2) Complexity: 1 Complexity Density: 0.5
513	0	public void setHeight(final int height)...
514		{
515	0	this._height = height;
516	0	this._has_height = true;
517		}
518
519		/**
520		*
521		*
522		* @param index
523		* @param vSecondaryStructure
524		* @throws java.lang.IndexOutOfBoundsException
525		* if the index given is outside the bounds of the collection
526		*/
		0% Uncovered Elements: 5 (5) Complexity: 3 Complexity Density: 1
527	0	public void setSecondaryStructure(...
528		final int index,
529		final jalview.schemabinding.version2.SecondaryStructure vSecondaryStructure)
530		throws java.lang.IndexOutOfBoundsException
531		{
532		// check bounds for index
533	0	if (index < 0 || index >= this._secondaryStructureList.size())
534		{
535	0	throw new IndexOutOfBoundsException(
536		"setSecondaryStructure: Index value '" + index
537		+ "' not in range [0.."
538		+ (this._secondaryStructureList.size() - 1) + "]");
539		}
540
541	0	this._secondaryStructureList.set(index, vSecondaryStructure);
542		}
543
544		/**
545		*
546		*
547		* @param vSecondaryStructureArray
548		*/
		0% Uncovered Elements: 5 (5) Complexity: 2 Complexity Density: 0.67
549	0	public void setSecondaryStructure(...
550		final jalview.schemabinding.version2.SecondaryStructure[] vSecondaryStructureArray)
551		{
552		// -- copy array
553	0	_secondaryStructureList.clear();
554
555	0	for (int i = 0; i < vSecondaryStructureArray.length; i++)
556		{
557	0	this._secondaryStructureList.add(vSecondaryStructureArray[i]);
558		}
559		}
560
561		/**
562		* Sets the value of field 'selectedRna'. The field 'selectedRna' has the
563		* following description: Index of the selected structure in the viewer panel
564		*
565		*
566		* @param selectedRna
567		* the value of field 'selectedRna'.
568		*/
		0% Uncovered Elements: 2 (2) Complexity: 1 Complexity Density: 0.5
569	0	public void setSelectedRna(final int selectedRna)...
570		{
571	0	this._selectedRna = selectedRna;
572	0	this._has_selectedRna = true;
573		}
574
575		/**
576		* Sets the value of field 'title'.
577		*
578		* @param title
579		* the value of field 'title'.
580		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
581	0	public void setTitle(final java.lang.String title)...
582		{
583	0	this._title = title;
584		}
585
586		/**
587		* Sets the value of field 'viewId'. The field 'viewId' has the following
588		* description: An id unique to the RNA viewer panel
589		*
590		*
591		* @param viewId
592		* the value of field 'viewId'.
593		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
594	0	public void setViewId(final java.lang.String viewId)...
595		{
596	0	this._viewId = viewId;
597		}
598
599		/**
600		* Sets the value of field 'width'.
601		*
602		* @param width
603		* the value of field 'width'.
604		*/
		0% Uncovered Elements: 2 (2) Complexity: 1 Complexity Density: 0.5
605	0	public void setWidth(final int width)...
606		{
607	0	this._width = width;
608	0	this._has_width = true;
609		}
610
611		/**
612		* Sets the value of field 'xpos'.
613		*
614		* @param xpos
615		* the value of field 'xpos'.
616		*/
		0% Uncovered Elements: 2 (2) Complexity: 1 Complexity Density: 0.5
617	0	public void setXpos(final int xpos)...
618		{
619	0	this._xpos = xpos;
620	0	this._has_xpos = true;
621		}
622
623		/**
624		* Sets the value of field 'ypos'.
625		*
626		* @param ypos
627		* the value of field 'ypos'.
628		*/
		0% Uncovered Elements: 2 (2) Complexity: 1 Complexity Density: 0.5
629	0	public void setYpos(final int ypos)...
630		{
631	0	this._ypos = ypos;
632	0	this._has_ypos = true;
633		}
634
635		/**
636		* Method unmarshal.
637		*
638		* @param reader
639		* @throws org.exolab.castor.xml.MarshalException
640		* if object is null or if any SAXException is thrown during
641		* marshaling
642		* @throws org.exolab.castor.xml.ValidationException
643		* if this object is an invalid instance according to the schema
644		* @return the unmarshaled jalview.schemabinding.version2.RnaViewer
645		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
646	0	public static jalview.schemabinding.version2.RnaViewer unmarshal(...
647		final java.io.Reader reader)
648		throws org.exolab.castor.xml.MarshalException,
649		org.exolab.castor.xml.ValidationException
650		{
651	0	return (jalview.schemabinding.version2.RnaViewer) Unmarshaller
652		.unmarshal(jalview.schemabinding.version2.RnaViewer.class,
653		reader);
654		}
655
656		/**
657		*
658		*
659		* @throws org.exolab.castor.xml.ValidationException
660		* if this object is an invalid instance according to the schema
661		*/
		0% Uncovered Elements: 2 (2) Complexity: 1 Complexity Density: 0.5
662	0	public void validate() throws org.exolab.castor.xml.ValidationException...
663		{
664	0	org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
665	0	validator.validate(this);
666		}
667
668		}