Classes

Class	Line #	Total Statements	Complexity	Uncovered Elements	TOTAL Coverage	Actions
DBRef	22	18	15	16	0.550%	Show methods

Class DBRef

Class DBRef	Line # 22	Total Statements 18	Complexity 15	Uncovered Elements 16	TOTAL Coverage 0.550%
DBRef()   DBRef()	5353	1.01	1.01	0.00	1.0 1.0100%
getAccessionId() : java.lang.String   getAccessionId() : java.lang.String	6767	1.01	1.01	0.00	1.0 1.0100%
getMapping() : jalview.schemabinding.version2.Mapping   getMapping() : jalview.schemabinding.version2.Mapping	7777	1.01	1.01	0.00	1.0 1.0100%
getSource() : java.lang.String   getSource() : java.lang.String	8787	1.01	1.01	0.00	1.0 1.0100%
getVersion() : java.lang.String   getVersion() : java.lang.String	9797	1.01	1.01	0.00	1.0 1.0100%
isValid() : boolean   isValid() : boolean	107107	4.04	2.02	4.04	0.0 0.00%
marshal(java.io.Writer) : void   marshal(java.io.Writer) : void	129129	1.01	1.01	1.01	0.0 0.00%
marshal(org.xml.sax.ContentHandler) : void   marshal(org.xml.sax.ContentHandler) : void	148148	1.01	1.01	1.01	0.0 0.00%
setAccessionId(java.lang.String) : void   setAccessionId(java.lang.String) : void	162162	1.01	1.01	0.00	1.0 1.0100%
setMapping(jalview.schemabinding.version2.Mapping) : void   setMapping(jalview.schemabinding.version2.Mapping) : void	173173	1.01	1.01	1.01	0.0 0.00%
setSource(java.lang.String) : void   setSource(java.lang.String) : void	185185	1.01	1.01	0.00	1.0 1.0100%
setVersion(java.lang.String) : void   setVersion(java.lang.String) : void	196196	1.01	1.01	0.00	1.0 1.0100%
unmarshal(java.io.Reader) : jalview.schemabinding.version2.DBRef   unmarshal(java.io.Reader) : jalview.schemabinding.version2.DBRef	212212	1.01	1.01	1.01	0.0 0.00%
validate() : void   validate() : void	227227	2.02	1.01	2.02	0.0 0.00%

 

Contributing tests

Contributing tests

Select all

	Test contribution	Test	Result	Actions
	0.5	jalview.io.Jalview2xmlTests.testRNAStructureRecoveryjalview.io.Jalview2xmlTests.testRNAStructureRecovery	1PASS
	0.5	jalview.io.Jalview2xmlTests.testStoreAndRecoverPDBEntryjalview.io.Jalview2xmlTests.testStoreAndRecoverPDBEntry	1PASS
	0.5	jalview.io.Jalview2xmlTests.gatherViewsHerejalview.io.Jalview2xmlTests.gatherViewsHere	1PASS
	0.5	jalview.io.AnnotatedPDBFileInputTest.testJalviewProjectRelocationAnnotationjalview.io.AnnotatedPDBFileInputTest.testJalviewProjectRelocationAnnotation	1PASS
	0.5	jalview.io.Jalview2xmlTests.viewRefPdbAnnotationjalview.io.Jalview2xmlTests.viewRefPdbAnnotation	1PASS
	0.5	jalview.io.Jalview2xmlTests.testCopyViewSettingsjalview.io.Jalview2xmlTests.testCopyViewSettings	1PASS
	0.5	jalview.io.Jalview2xmlTests.testStoreAndRecoverExpandedviewsjalview.io.Jalview2xmlTests.testStoreAndRecoverExpandedviews	1PASS
	0.5	jalview.io.Jalview2xmlTests.testStoreAndRecoverReferenceSeqSettingsjalview.io.Jalview2xmlTests.testStoreAndRecoverReferenceSeqSettings	1PASS
	0.5	jalview.io.Jalview2xmlTests.noDuplicatePdbMappingsMadejalview.io.Jalview2xmlTests.noDuplicatePdbMappingsMade	1PASS

 

Source view

1		/*
2		* This class was automatically generated with
3		* <a href="http://www.castor.org">Castor 1.1</a>, using an XML
4		* Schema.
5		* $Id$
6		*/
7
8		package jalview.schemabinding.version2;
9
10		//---------------------------------/
11		//- Imported classes and packages -/
12		//---------------------------------/
13
14		import org.exolab.castor.xml.Marshaller;
15		import org.exolab.castor.xml.Unmarshaller;
16
17		/**
18		* Class DBRef.
19		*
20		* @version $Revision$ $Date$
21		*/
		50% Uncovered Elements: 16 (32) Complexity: 15 Complexity Density: 0.83
22		public class DBRef implements java.io.Serializable
23		{
24
25		// --------------------------/
26		// - Class/Member Variables -/
27		// --------------------------/
28
29		/**
30		* Field _source.
31		*/
32		private java.lang.String _source;
33
34		/**
35		* Field _version.
36		*/
37		private java.lang.String _version;
38
39		/**
40		* Field _accessionId.
41		*/
42		private java.lang.String _accessionId;
43
44		/**
45		* Field _mapping.
46		*/
47		private jalview.schemabinding.version2.Mapping _mapping;
48
49		// ----------------/
50		// - Constructors -/
51		// ----------------/
52
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
53	564	public DBRef()...
54		{
55	564	super();
56		}
57
58		// -----------/
59		// - Methods -/
60		// -----------/
61
62		/**
63		* Returns the value of field 'accessionId'.
64		*
65		* @return the value of field 'AccessionId'.
66		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
67	659	public java.lang.String getAccessionId()...
68		{
69	659	return this._accessionId;
70		}
71
72		/**
73		* Returns the value of field 'mapping'.
74		*
75		* @return the value of field 'Mapping'.
76		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
77	659	public jalview.schemabinding.version2.Mapping getMapping()...
78		{
79	659	return this._mapping;
80		}
81
82		/**
83		* Returns the value of field 'source'.
84		*
85		* @return the value of field 'Source'.
86		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
87	659	public java.lang.String getSource()...
88		{
89	659	return this._source;
90		}
91
92		/**
93		* Returns the value of field 'version'.
94		*
95		* @return the value of field 'Version'.
96		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
97	659	public java.lang.String getVersion()...
98		{
99	659	return this._version;
100		}
101
102		/**
103		* Method isValid.
104		*
105		* @return true if this object is valid according to the schema
106		*/
		0% Uncovered Elements: 4 (4) Complexity: 2 Complexity Density: 0.5
107	0	public boolean isValid()...
108		{
109	0	try
110		{
111	0	validate();
112		} catch (org.exolab.castor.xml.ValidationException vex)
113		{
114	0	return false;
115		}
116	0	return true;
117		}
118
119		/**
120		*
121		*
122		* @param out
123		* @throws org.exolab.castor.xml.MarshalException
124		* if object is null or if any SAXException is thrown during
125		* marshaling
126		* @throws org.exolab.castor.xml.ValidationException
127		* if this object is an invalid instance according to the schema
128		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
129	0	public void marshal(final java.io.Writer out)...
130		throws org.exolab.castor.xml.MarshalException,
131		org.exolab.castor.xml.ValidationException
132		{
133	0	Marshaller.marshal(this, out);
134		}
135
136		/**
137		*
138		*
139		* @param handler
140		* @throws java.io.IOException
141		* if an IOException occurs during marshaling
142		* @throws org.exolab.castor.xml.ValidationException
143		* if this object is an invalid instance according to the schema
144		* @throws org.exolab.castor.xml.MarshalException
145		* if object is null or if any SAXException is thrown during
146		* marshaling
147		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
148	0	public void marshal(final org.xml.sax.ContentHandler handler)...
149		throws java.io.IOException,
150		org.exolab.castor.xml.MarshalException,
151		org.exolab.castor.xml.ValidationException
152		{
153	0	Marshaller.marshal(this, handler);
154		}
155
156		/**
157		* Sets the value of field 'accessionId'.
158		*
159		* @param accessionId
160		* the value of field 'accessionId'.
161		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
162	564	public void setAccessionId(final java.lang.String accessionId)...
163		{
164	564	this._accessionId = accessionId;
165		}
166
167		/**
168		* Sets the value of field 'mapping'.
169		*
170		* @param mapping
171		* the value of field 'mapping'.
172		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
173	0	public void setMapping(...
174		final jalview.schemabinding.version2.Mapping mapping)
175		{
176	0	this._mapping = mapping;
177		}
178
179		/**
180		* Sets the value of field 'source'.
181		*
182		* @param source
183		* the value of field 'source'.
184		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
185	564	public void setSource(final java.lang.String source)...
186		{
187	564	this._source = source;
188		}
189
190		/**
191		* Sets the value of field 'version'.
192		*
193		* @param version
194		* the value of field 'version'.
195		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
196	564	public void setVersion(final java.lang.String version)...
197		{
198	564	this._version = version;
199		}
200
201		/**
202		* Method unmarshal.
203		*
204		* @param reader
205		* @throws org.exolab.castor.xml.MarshalException
206		* if object is null or if any SAXException is thrown during
207		* marshaling
208		* @throws org.exolab.castor.xml.ValidationException
209		* if this object is an invalid instance according to the schema
210		* @return the unmarshaled jalview.schemabinding.version2.DBRef
211		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
212	0	public static jalview.schemabinding.version2.DBRef unmarshal(...
213		final java.io.Reader reader)
214		throws org.exolab.castor.xml.MarshalException,
215		org.exolab.castor.xml.ValidationException
216		{
217	0	return (jalview.schemabinding.version2.DBRef) Unmarshaller.unmarshal(
218		jalview.schemabinding.version2.DBRef.class, reader);
219		}
220
221		/**
222		*
223		*
224		* @throws org.exolab.castor.xml.ValidationException
225		* if this object is an invalid instance according to the schema
226		*/
		0% Uncovered Elements: 2 (2) Complexity: 1 Complexity Density: 0.5
227	0	public void validate() throws org.exolab.castor.xml.ValidationException...
228		{
229	0	org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
230	0	validator.validate(this);
231		}
232
233		}