Classes

Class	Line #	Total Statements	Complexity	Uncovered Elements	TOTAL Coverage	Actions
AlcodMap	22	14	11	24	0.00%	Show methods

Class AlcodMap

Class AlcodMap	Line # 22	Total Statements 14	Complexity 11	Uncovered Elements 24	TOTAL Coverage 0.00%
AlcodMap()   AlcodMap()	4545	1.01	1.01	1.01	0.0 0.00%
getDnasq() : java.lang.String   getDnasq() : java.lang.String	6161	1.01	1.01	1.01	0.0 0.00%
getMapping() : jalview.schemabinding.version2.Mapping   getMapping() : jalview.schemabinding.version2.Mapping	7373	1.01	1.01	1.01	0.0 0.00%
isValid() : boolean   isValid() : boolean	8383	4.04	2.02	4.04	0.0 0.00%
marshal(java.io.Writer) : void   marshal(java.io.Writer) : void	105105	1.01	1.01	1.01	0.0 0.00%
marshal(org.xml.sax.ContentHandler) : void   marshal(org.xml.sax.ContentHandler) : void	124124	1.01	1.01	1.01	0.0 0.00%
setDnasq(java.lang.String) : void   setDnasq(java.lang.String) : void	140140	1.01	1.01	1.01	0.0 0.00%
setMapping(jalview.schemabinding.version2.Mapping) : void   setMapping(jalview.schemabinding.version2.Mapping) : void	153153	1.01	1.01	1.01	0.0 0.00%
unmarshal(java.io.Reader) : jalview.schemabinding.version2.AlcodMap   unmarshal(java.io.Reader) : jalview.schemabinding.version2.AlcodMap	170170	1.01	1.01	1.01	0.0 0.00%
validate() : void   validate() : void	186186	2.02	1.01	2.02	0.0 0.00%

 

Contributing tests

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1		/*
2		* This class was automatically generated with
3		* <a href="http://www.castor.org">Castor 1.1</a>, using an XML
4		* Schema.
5		* $Id$
6		*/
7
8		package jalview.schemabinding.version2;
9
10		//---------------------------------/
11		//- Imported classes and packages -/
12		//---------------------------------/
13
14		import org.exolab.castor.xml.Marshaller;
15		import org.exolab.castor.xml.Unmarshaller;
16
17		/**
18		* Class AlcodMap.
19		*
20		* @version $Revision$ $Date$
21		*/
		0% Uncovered Elements: 24 (24) Complexity: 11 Complexity Density: 0.79
22		public class AlcodMap implements java.io.Serializable
23		{
24
25		// --------------------------/
26		// - Class/Member Variables -/
27		// --------------------------/
28
29		/**
30		* internal jalview id for the dnasq for this mapping.
31		*
32		*/
33		private java.lang.String _dnasq;
34
35		/**
36		* a Mapping entry and an associated protein sequence
37		*
38		*/
39		private jalview.schemabinding.version2.Mapping _mapping;
40
41		// ----------------/
42		// - Constructors -/
43		// ----------------/
44
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
45	0	public AlcodMap()...
46		{
47	0	super();
48		}
49
50		// -----------/
51		// - Methods -/
52		// -----------/
53
54		/**
55		* Returns the value of field 'dnasq'. The field 'dnasq' has the following
56		* description: internal jalview id for the dnasq for this mapping.
57		*
58		*
59		* @return the value of field 'Dnasq'.
60		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
61	0	public java.lang.String getDnasq()...
62		{
63	0	return this._dnasq;
64		}
65
66		/**
67		* Returns the value of field 'mapping'. The field 'mapping' has the following
68		* description: a Mapping entry and an associated protein sequence
69		*
70		*
71		* @return the value of field 'Mapping'.
72		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
73	0	public jalview.schemabinding.version2.Mapping getMapping()...
74		{
75	0	return this._mapping;
76		}
77
78		/**
79		* Method isValid.
80		*
81		* @return true if this object is valid according to the schema
82		*/
		0% Uncovered Elements: 4 (4) Complexity: 2 Complexity Density: 0.5
83	0	public boolean isValid()...
84		{
85	0	try
86		{
87	0	validate();
88		} catch (org.exolab.castor.xml.ValidationException vex)
89		{
90	0	return false;
91		}
92	0	return true;
93		}
94
95		/**
96		*
97		*
98		* @param out
99		* @throws org.exolab.castor.xml.MarshalException
100		* if object is null or if any SAXException is thrown during
101		* marshaling
102		* @throws org.exolab.castor.xml.ValidationException
103		* if this object is an invalid instance according to the schema
104		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
105	0	public void marshal(final java.io.Writer out)...
106		throws org.exolab.castor.xml.MarshalException,
107		org.exolab.castor.xml.ValidationException
108		{
109	0	Marshaller.marshal(this, out);
110		}
111
112		/**
113		*
114		*
115		* @param handler
116		* @throws java.io.IOException
117		* if an IOException occurs during marshaling
118		* @throws org.exolab.castor.xml.ValidationException
119		* if this object is an invalid instance according to the schema
120		* @throws org.exolab.castor.xml.MarshalException
121		* if object is null or if any SAXException is thrown during
122		* marshaling
123		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
124	0	public void marshal(final org.xml.sax.ContentHandler handler)...
125		throws java.io.IOException,
126		org.exolab.castor.xml.MarshalException,
127		org.exolab.castor.xml.ValidationException
128		{
129	0	Marshaller.marshal(this, handler);
130		}
131
132		/**
133		* Sets the value of field 'dnasq'. The field 'dnasq' has the following
134		* description: internal jalview id for the dnasq for this mapping.
135		*
136		*
137		* @param dnasq
138		* the value of field 'dnasq'.
139		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
140	0	public void setDnasq(final java.lang.String dnasq)...
141		{
142	0	this._dnasq = dnasq;
143		}
144
145		/**
146		* Sets the value of field 'mapping'. The field 'mapping' has the following
147		* description: a Mapping entry and an associated protein sequence
148		*
149		*
150		* @param mapping
151		* the value of field 'mapping'.
152		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
153	0	public void setMapping(...
154		final jalview.schemabinding.version2.Mapping mapping)
155		{
156	0	this._mapping = mapping;
157		}
158
159		/**
160		* Method unmarshal.
161		*
162		* @param reader
163		* @throws org.exolab.castor.xml.MarshalException
164		* if object is null or if any SAXException is thrown during
165		* marshaling
166		* @throws org.exolab.castor.xml.ValidationException
167		* if this object is an invalid instance according to the schema
168		* @return the unmarshaled jalview.schemabinding.version2.AlcodMap
169		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
170	0	public static jalview.schemabinding.version2.AlcodMap unmarshal(...
171		final java.io.Reader reader)
172		throws org.exolab.castor.xml.MarshalException,
173		org.exolab.castor.xml.ValidationException
174		{
175	0	return (jalview.schemabinding.version2.AlcodMap) Unmarshaller
176		.unmarshal(jalview.schemabinding.version2.AlcodMap.class,
177		reader);
178		}
179
180		/**
181		*
182		*
183		* @throws org.exolab.castor.xml.ValidationException
184		* if this object is an invalid instance according to the schema
185		*/
		0% Uncovered Elements: 2 (2) Complexity: 1 Complexity Density: 0.5
186	0	public void validate() throws org.exolab.castor.xml.ValidationException...
187		{
188	0	org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
189	0	validator.validate(this);
190		}
191
192		}