Class JmolParserTest

Class	Tests	Fail	Error	Time (secs)	% Tests Success
JmolParserTest	66	22	00	1.152	0.666666766.7%

Tests	Started	Status	Time (secs)	Message
JmolParserTest.testAlignmentLoaderJmolParserTest.testAlignmentLoader	154099893040831 Oct 15:15:30	3FAIL	0.0010.001	java.lang.NullPointerException at jalview.ext.jmol.JmolParserTest.testAlignmentLoader(JmolParserTest.java:119) at org.testng.internal.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:85) at org.testng.internal.Invoker.invokeMethod(Invoker.java:648) at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:834) at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1142) at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:124) at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:108) at org.testng.TestRunner.privateRun(TestRunner.java:771) at org.testng.TestRunner.run(TestRunner.java:621) at org.testng.SuiteRunner.runTest(SuiteRunner.java:357) at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:352) at org.testng.SuiteRunner.privateRun(SuiteRunner.java:310) at org.testng.SuiteRunner.run(SuiteRunner.java:259) at org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52) at org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:86) at org.testng.TestNG.runSuitesSequentially(TestNG.java:1176) at org.testng.TestNG.runSuitesLocally(TestNG.java:1101) at org.testng.TestNG.run(TestNG.java:1009) at org.testng.TestNG.privateMain(TestNG.java:1316) at org.testng.TestNG.main(TestNG.java:1285)
JmolParserTest.testFileParserJmolParserTest.testFileParser	154099893041631 Oct 15:15:30	3FAIL	0.0010.001	Problem opening 1GAQ.txt : FILE CANNOT BE OPENED FOR READING Problem opening 1GAQ.txt : FILE CANNOT BE OPENED FOR READING java.io.IOException: Problem opening 1GAQ.txt : FILE CANNOT BE OPENED FOR READING at jalview.io.FileParse.parse(FileParse.java:370) at jalview.io.FileParse.<init>(FileParse.java:329) at jalview.io.AlignFile.<init>(AlignFile.java:137) at jalview.io.StructureFile.<init>(StructureFile.java:104) at mc_view.PDBfile.<init>(PDBfile.java:53) at jalview.ext.jmol.JmolParserTest.testFileParser(JmolParserTest.java:128) at org.testng.internal.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:85) at org.testng.internal.Invoker.invokeMethod(Invoker.java:648) at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:834) at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1142) at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:124) at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:108) at org.testng.TestRunner.privateRun(TestRunner.java:771) at org.testng.TestRunner.run(TestRunner.java:621) at org.testng.SuiteRunner.runTest(SuiteRunner.java:357) at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:352) at org.testng.SuiteRunner.privateRun(SuiteRunner.java:310) at org.testng.SuiteRunner.run(SuiteRunner.java:259) at org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52) at org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:86) at org.testng.TestNG.runSuitesSequentially(TestNG.java:1176) at org.testng.TestNG.runSuitesLocally(TestNG.java:1101) at org.testng.TestNG.run(TestNG.java:1009) at org.testng.TestNG.privateMain(TestNG.java:1316) at org.testng.TestNG.main(TestNG.java:1285)
JmolParserTest.testSetSecondaryStructureJmolParserTest.testSetSecondaryStructure	154099893157931 Oct 15:15:31	1PASS	0.00
JmolParserTest.testParse_missingResiduesJmolParserTest.testParse_missingResidues	154099893125231 Oct 15:15:31	1PASS	0.3230.323
JmolParserTest.testParse_alternativeResiduesJmolParserTest.testParse_alternativeResidues	154099893092331 Oct 15:15:30	1PASS	0.3260.326
JmolParserTest.testLocalPDBIdJmolParserTest.testLocalPDBId	154099893041931 Oct 15:15:30	1PASS	0.5010.501

jalviewX

Class JmolParserTest