Classes

Class	Line #	Total Statements	Complexity	Uncovered Elements	TOTAL Coverage	Actions
Species	32	6	5	12	0.00%	Show methods

Class Species

Class Species	Line # 32	Total Statements 6	Complexity 5	Uncovered Elements 12	TOTAL Coverage 0.00%
<clinit>, line 46()   <clinit>, line 46()	4646	3.03	2.02	5.05	0.0 0.00%
Species(boolean)   Species(boolean)	5858	1.01	1.01	1.01	0.0 0.00%
isModelOrganism() : boolean   isModelOrganism() : boolean	6363	1.01	1.01	1.01	0.0 0.00%
getModelOrganisms() : Set<Species>   getModelOrganisms() : Set<Species>	6868	1.01	1.01	1.01	0.0 0.00%

 

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1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.ext.ensembl;
22
23		import java.util.HashSet;
24		import java.util.Set;
25
26		/**
27		* Selected species identifiers used by Ensembl
28		*
29		* @author gmcarstairs
30		* @see http://rest.ensembl.org/info/species?content-type=text/xml
31		*/
		0% Uncovered Elements: 12 (12) Complexity: 5 Complexity Density: 0.83
32		enum Species
33		{
34		/*
35		* using any suitably readable alias as the enum name; these are all
36		* valid species parameters to Ensembl REST services where applicable
37		*/
38		human(true), mouse(true), s_cerevisiae(true), cow(false), pig(false),
39		rat(true), celegans(true), sheep(false), horse(false), gorilla(false),
40		rabbit(false), gibbon(false), dog(false), orangutan(false), xenopus(true),
41		chimpanzee(false), cat(false), zebrafish(true), chicken(true),
42		dmelanogaster(true);
43
44		static Set<Species> modelOrganisms = new HashSet<>();
45
		0% Uncovered Elements: 5 (5) Complexity: 2 Complexity Density: 0.67
46	0	static...
47		{
48	0	for (Species s : values())
49		{
50	0	if (s.isModelOrganism())
51		{
52	0	modelOrganisms.add(s);
53		}
54		}
55		}
56		boolean modelOrganism;
57
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
58	0	private Species(boolean model)...
59		{
60	0	this.modelOrganism = model;
61		}
62
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
63	0	boolean isModelOrganism()...
64		{
65	0	return modelOrganism;
66		}
67
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
68	0	public static Set<Species> getModelOrganisms()...
69		{
70	0	return modelOrganisms;
71		}
72		}