Classes

Class	Line #	Total Statements	Complexity	Uncovered Elements	TOTAL Coverage	Actions
CompoundMatcher	22	41	30	73	0.00%	Show methods

Class CompoundMatcher

Class CompoundMatcher	Line # 22	Total Statements 41	Complexity 30	Uncovered Elements 73	TOTAL Coverage 0.00%
CompoundMatcher()   CompoundMatcher()	4848	2.02	1.01	2.02	0.0 0.00%
addMatcherSet(jalview.binding.MatcherSet) : void   addMatcherSet(jalview.binding.MatcherSet) : void	6565	3.03	2.02	5.05	0.0 0.00%
addMatcherSet(int,jalview.binding.MatcherSet) : void   addMatcherSet(int,jalview.binding.MatcherSet) : void	8686	3.03	2.02	5.05	0.0 0.00%
deleteAnd() : void   deleteAnd() : void	102102	1.01	1.01	1.01	0.0 0.00%
enumerateMatcherSet() : java.util.Enumeration   enumerateMatcherSet() : java.util.Enumeration	112112	1.01	1.01	1.01	0.0 0.00%
getAnd() : boolean   getAnd() : boolean	123123	1.01	1.01	1.01	0.0 0.00%
getMatcherSet(int) : jalview.binding.MatcherSet   getMatcherSet(int) : jalview.binding.MatcherSet	136136	3.03	3.03	5.05	0.0 0.00%
getMatcherSet() : jalview.binding.MatcherSet[]   getMatcherSet() : jalview.binding.MatcherSet[]	159159	2.02	1.01	2.02	0.0 0.00%
getMatcherSetCount() : int   getMatcherSetCount() : int	171171	1.01	1.01	1.01	0.0 0.00%
hasAnd() : boolean   hasAnd() : boolean	181181	1.01	1.01	1.01	0.0 0.00%
isAnd() : boolean   isAnd() : boolean	192192	1.01	1.01	1.01	0.0 0.00%
isValid() : boolean   isValid() : boolean	202202	4.04	2.02	4.04	0.0 0.00%
marshal(java.io.Writer) : void   marshal(java.io.Writer) : void	224224	1.01	1.01	1.01	0.0 0.00%
marshal(org.xml.sax.ContentHandler) : void   marshal(org.xml.sax.ContentHandler) : void	243243	1.01	1.01	1.01	0.0 0.00%
removeAllMatcherSet() : void   removeAllMatcherSet() : void	253253	1.01	1.01	1.01	0.0 0.00%
removeMatcherSet(jalview.binding.MatcherSet) : boolean   removeMatcherSet(jalview.binding.MatcherSet) : boolean	264264	2.02	1.01	2.02	0.0 0.00%
removeMatcherSetAt(int) : jalview.binding.MatcherSet   removeMatcherSetAt(int) : jalview.binding.MatcherSet	277277	2.02	1.01	2.02	0.0 0.00%
setAnd(boolean) : void   setAnd(boolean) : void	290290	2.02	1.01	2.02	0.0 0.00%
setMatcherSet(int,jalview.binding.MatcherSet) : void   setMatcherSet(int,jalview.binding.MatcherSet) : void	304304	3.03	3.03	5.05	0.0 0.00%
setMatcherSet(jalview.binding.MatcherSet[]) : void   setMatcherSet(jalview.binding.MatcherSet[]) : void	324324	3.03	2.02	5.05	0.0 0.00%
unmarshal(java.io.Reader) : jalview.binding.CompoundMatcher   unmarshal(java.io.Reader) : jalview.binding.CompoundMatcher	347347	1.01	1.01	1.01	0.0 0.00%
validate() : void   validate() : void	362362	2.02	1.01	2.02	0.0 0.00%

 

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1		/*
2		* This class was automatically generated with
3		* <a href="http://www.castor.org">Castor 1.1</a>, using an XML
4		* Schema.
5		* $Id$
6		*/
7
8		package jalview.binding;
9
10		//---------------------------------/
11		//- Imported classes and packages -/
12		//---------------------------------/
13
14		import org.exolab.castor.xml.Marshaller;
15		import org.exolab.castor.xml.Unmarshaller;
16
17		/**
18		* Class CompoundMatcher.
19		*
20		* @version $Revision$ $Date$
21		*/
		0% Uncovered Elements: 73 (73) Complexity: 30 Complexity Density: 0.73
22		public class CompoundMatcher implements java.io.Serializable
23		{
24
25		// --------------------------/
26		// - Class/Member Variables -/
27		// --------------------------/
28
29		/**
30		* If true, matchers are AND-ed, if false they are OR-ed
31		*/
32		private boolean _and;
33
34		/**
35		* keeps track of state for field: _and
36		*/
37		private boolean _has_and;
38
39		/**
40		* Field _matcherSetList.
41		*/
42		private java.util.Vector _matcherSetList;
43
44		// ----------------/
45		// - Constructors -/
46		// ----------------/
47
		0% Uncovered Elements: 2 (2) Complexity: 1 Complexity Density: 0.5
48	0	public CompoundMatcher()...
49		{
50	0	super();
51	0	this._matcherSetList = new java.util.Vector();
52		}
53
54		// -----------/
55		// - Methods -/
56		// -----------/
57
58		/**
59		*
60		*
61		* @param vMatcherSet
62		* @throws java.lang.IndexOutOfBoundsException
63		* if the index given is outside the bounds of the collection
64		*/
		0% Uncovered Elements: 5 (5) Complexity: 2 Complexity Density: 0.67
65	0	public void addMatcherSet(final jalview.binding.MatcherSet vMatcherSet)...
66		throws java.lang.IndexOutOfBoundsException
67		{
68		// check for the maximum size
69	0	if (this._matcherSetList.size() >= 2)
70		{
71	0	throw new IndexOutOfBoundsException(
72		"addMatcherSet has a maximum of 2");
73		}
74
75	0	this._matcherSetList.addElement(vMatcherSet);
76		}
77
78		/**
79		*
80		*
81		* @param index
82		* @param vMatcherSet
83		* @throws java.lang.IndexOutOfBoundsException
84		* if the index given is outside the bounds of the collection
85		*/
		0% Uncovered Elements: 5 (5) Complexity: 2 Complexity Density: 0.67
86	0	public void addMatcherSet(final int index,...
87		final jalview.binding.MatcherSet vMatcherSet)
88		throws java.lang.IndexOutOfBoundsException
89		{
90		// check for the maximum size
91	0	if (this._matcherSetList.size() >= 2)
92		{
93	0	throw new IndexOutOfBoundsException(
94		"addMatcherSet has a maximum of 2");
95		}
96
97	0	this._matcherSetList.add(index, vMatcherSet);
98		}
99
100		/**
101		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
102	0	public void deleteAnd()...
103		{
104	0	this._has_and = false;
105		}
106
107		/**
108		* Method enumerateMatcherSet.
109		*
110		* @return an Enumeration over all jalview.binding.MatcherSet elements
111		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
112	0	public java.util.Enumeration enumerateMatcherSet()...
113		{
114	0	return this._matcherSetList.elements();
115		}
116
117		/**
118		* Returns the value of field 'and'. The field 'and' has the following
119		* description: If true, matchers are AND-ed, if false they are OR-ed
120		*
121		* @return the value of field 'And'.
122		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
123	0	public boolean getAnd()...
124		{
125	0	return this._and;
126		}
127
128		/**
129		* Method getMatcherSet.
130		*
131		* @param index
132		* @throws java.lang.IndexOutOfBoundsException
133		* if the index given is outside the bounds of the collection
134		* @return the value of the jalview.binding.MatcherSet at the given index
135		*/
		0% Uncovered Elements: 5 (5) Complexity: 3 Complexity Density: 1
136	0	public jalview.binding.MatcherSet getMatcherSet(final int index)...
137		throws java.lang.IndexOutOfBoundsException
138		{
139		// check bounds for index
140	0	if (index < 0 || index >= this._matcherSetList.size())
141		{
142	0	throw new IndexOutOfBoundsException(
143		"getMatcherSet: Index value '" + index + "' not in range [0.."
144		+ (this._matcherSetList.size() - 1) + "]");
145		}
146
147	0	return (jalview.binding.MatcherSet) _matcherSetList.get(index);
148		}
149
150		/**
151		* Method getMatcherSet.Returns the contents of the collection in an Array.
152		* <p>
153		* Note: Just in case the collection contents are changing in another thread,
154		* we pass a 0-length Array of the correct type into the API call. This way we
155		* <i>know</i> that the Array returned is of exactly the correct length.
156		*
157		* @return this collection as an Array
158		*/
		0% Uncovered Elements: 2 (2) Complexity: 1 Complexity Density: 0.5
159	0	public jalview.binding.MatcherSet[] getMatcherSet()...
160		{
161	0	jalview.binding.MatcherSet[] array = new jalview.binding.MatcherSet[0];
162	0	return (jalview.binding.MatcherSet[]) this._matcherSetList
163		.toArray(array);
164		}
165
166		/**
167		* Method getMatcherSetCount.
168		*
169		* @return the size of this collection
170		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
171	0	public int getMatcherSetCount()...
172		{
173	0	return this._matcherSetList.size();
174		}
175
176		/**
177		* Method hasAnd.
178		*
179		* @return true if at least one And has been added
180		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
181	0	public boolean hasAnd()...
182		{
183	0	return this._has_and;
184		}
185
186		/**
187		* Returns the value of field 'and'. The field 'and' has the following
188		* description: If true, matchers are AND-ed, if false they are OR-ed
189		*
190		* @return the value of field 'And'.
191		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
192	0	public boolean isAnd()...
193		{
194	0	return this._and;
195		}
196
197		/**
198		* Method isValid.
199		*
200		* @return true if this object is valid according to the schema
201		*/
		0% Uncovered Elements: 4 (4) Complexity: 2 Complexity Density: 0.5
202	0	public boolean isValid()...
203		{
204	0	try
205		{
206	0	validate();
207		} catch (org.exolab.castor.xml.ValidationException vex)
208		{
209	0	return false;
210		}
211	0	return true;
212		}
213
214		/**
215		*
216		*
217		* @param out
218		* @throws org.exolab.castor.xml.MarshalException
219		* if object is null or if any SAXException is thrown during
220		* marshaling
221		* @throws org.exolab.castor.xml.ValidationException
222		* if this object is an invalid instance according to the schema
223		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
224	0	public void marshal(final java.io.Writer out)...
225		throws org.exolab.castor.xml.MarshalException,
226		org.exolab.castor.xml.ValidationException
227		{
228	0	Marshaller.marshal(this, out);
229		}
230
231		/**
232		*
233		*
234		* @param handler
235		* @throws java.io.IOException
236		* if an IOException occurs during marshaling
237		* @throws org.exolab.castor.xml.ValidationException
238		* if this object is an invalid instance according to the schema
239		* @throws org.exolab.castor.xml.MarshalException
240		* if object is null or if any SAXException is thrown during
241		* marshaling
242		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
243	0	public void marshal(final org.xml.sax.ContentHandler handler)...
244		throws java.io.IOException,
245		org.exolab.castor.xml.MarshalException,
246		org.exolab.castor.xml.ValidationException
247		{
248	0	Marshaller.marshal(this, handler);
249		}
250
251		/**
252		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
253	0	public void removeAllMatcherSet()...
254		{
255	0	this._matcherSetList.clear();
256		}
257
258		/**
259		* Method removeMatcherSet.
260		*
261		* @param vMatcherSet
262		* @return true if the object was removed from the collection.
263		*/
		0% Uncovered Elements: 2 (2) Complexity: 1 Complexity Density: 0.5
264	0	public boolean removeMatcherSet(...
265		final jalview.binding.MatcherSet vMatcherSet)
266		{
267	0	boolean removed = _matcherSetList.remove(vMatcherSet);
268	0	return removed;
269		}
270
271		/**
272		* Method removeMatcherSetAt.
273		*
274		* @param index
275		* @return the element removed from the collection
276		*/
		0% Uncovered Elements: 2 (2) Complexity: 1 Complexity Density: 0.5
277	0	public jalview.binding.MatcherSet removeMatcherSetAt(final int index)...
278		{
279	0	java.lang.Object obj = this._matcherSetList.remove(index);
280	0	return (jalview.binding.MatcherSet) obj;
281		}
282
283		/**
284		* Sets the value of field 'and'. The field 'and' has the following
285		* description: If true, matchers are AND-ed, if false they are OR-ed
286		*
287		* @param and
288		* the value of field 'and'.
289		*/
		0% Uncovered Elements: 2 (2) Complexity: 1 Complexity Density: 0.5
290	0	public void setAnd(final boolean and)...
291		{
292	0	this._and = and;
293	0	this._has_and = true;
294		}
295
296		/**
297		*
298		*
299		* @param index
300		* @param vMatcherSet
301		* @throws java.lang.IndexOutOfBoundsException
302		* if the index given is outside the bounds of the collection
303		*/
		0% Uncovered Elements: 5 (5) Complexity: 3 Complexity Density: 1
304	0	public void setMatcherSet(final int index,...
305		final jalview.binding.MatcherSet vMatcherSet)
306		throws java.lang.IndexOutOfBoundsException
307		{
308		// check bounds for index
309	0	if (index < 0 || index >= this._matcherSetList.size())
310		{
311	0	throw new IndexOutOfBoundsException(
312		"setMatcherSet: Index value '" + index + "' not in range [0.."
313		+ (this._matcherSetList.size() - 1) + "]");
314		}
315
316	0	this._matcherSetList.set(index, vMatcherSet);
317		}
318
319		/**
320		*
321		*
322		* @param vMatcherSetArray
323		*/
		0% Uncovered Elements: 5 (5) Complexity: 2 Complexity Density: 0.67
324	0	public void setMatcherSet(...
325		final jalview.binding.MatcherSet[] vMatcherSetArray)
326		{
327		// -- copy array
328	0	_matcherSetList.clear();
329
330	0	for (int i = 0; i < vMatcherSetArray.length; i++)
331		{
332	0	this._matcherSetList.add(vMatcherSetArray[i]);
333		}
334		}
335
336		/**
337		* Method unmarshal.
338		*
339		* @param reader
340		* @throws org.exolab.castor.xml.MarshalException
341		* if object is null or if any SAXException is thrown during
342		* marshaling
343		* @throws org.exolab.castor.xml.ValidationException
344		* if this object is an invalid instance according to the schema
345		* @return the unmarshaled jalview.binding.CompoundMatcher
346		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
347	0	public static jalview.binding.CompoundMatcher unmarshal(...
348		final java.io.Reader reader)
349		throws org.exolab.castor.xml.MarshalException,
350		org.exolab.castor.xml.ValidationException
351		{
352	0	return (jalview.binding.CompoundMatcher) Unmarshaller
353		.unmarshal(jalview.binding.CompoundMatcher.class, reader);
354		}
355
356		/**
357		*
358		*
359		* @throws org.exolab.castor.xml.ValidationException
360		* if this object is an invalid instance according to the schema
361		*/
		0% Uncovered Elements: 2 (2) Complexity: 1 Complexity Density: 0.5
362	0	public void validate() throws org.exolab.castor.xml.ValidationException...
363		{
364	0	org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
365	0	validator.validate(this);
366		}
367
368		}