Classes

Class	Line #	Total Statements	Complexity	Uncovered Elements	TOTAL Coverage	Actions
Colour	22	73	57	132	0.00%	Show methods

Class Colour

Class Colour	Line # 22	Total Statements 73	Complexity 57	Uncovered Elements 132	TOTAL Coverage 0.00%
Colour()   Colour()	115115	3.03	1.01	3.03	0.0 0.00%
addAttributeName(java.lang.String) : void   addAttributeName(java.lang.String) : void	133133	3.03	2.02	5.05	0.0 0.00%
addAttributeName(int,java.lang.String) : void   addAttributeName(int,java.lang.String) : void	154154	3.03	2.02	5.05	0.0 0.00%
deleteAutoScale() : void   deleteAutoScale() : void	170170	1.01	1.01	1.01	0.0 0.00%
deleteColourByLabel() : void   deleteColourByLabel() : void	177177	1.01	1.01	1.01	0.0 0.00%
deleteMax() : void   deleteMax() : void	184184	1.01	1.01	1.01	0.0 0.00%
deleteMin() : void   deleteMin() : void	191191	1.01	1.01	1.01	0.0 0.00%
deleteThreshold() : void   deleteThreshold() : void	198198	1.01	1.01	1.01	0.0 0.00%
enumerateAttributeName() : java.util.Enumeration   enumerateAttributeName() : java.util.Enumeration	208208	1.01	1.01	1.01	0.0 0.00%
getAttributeName(int) : java.lang.String   getAttributeName(int) : java.lang.String	221221	3.03	3.03	5.05	0.0 0.00%
getAttributeName() : java.lang.String[]   getAttributeName() : java.lang.String[]	244244	2.02	1.01	2.02	0.0 0.00%
getAttributeNameCount() : int   getAttributeNameCount() : int	255255	1.01	1.01	1.01	0.0 0.00%
getAutoScale() : boolean   getAutoScale() : boolean	265265	1.01	1.01	1.01	0.0 0.00%
getColourByLabel() : boolean   getColourByLabel() : boolean	275275	1.01	1.01	1.01	0.0 0.00%
getMax() : float   getMax() : float	285285	1.01	1.01	1.01	0.0 0.00%
getMin() : float   getMin() : float	295295	1.01	1.01	1.01	0.0 0.00%
getMinRGB() : java.lang.String   getMinRGB() : java.lang.String	305305	1.01	1.01	1.01	0.0 0.00%
getName() : java.lang.String   getName() : java.lang.String	317317	1.01	1.01	1.01	0.0 0.00%
getNoValueColour() : jalview.binding.types.NoValueColour   getNoValueColour() : jalview.binding.types.NoValueColour	327327	1.01	1.01	1.01	0.0 0.00%
getRGB() : java.lang.String   getRGB() : java.lang.String	337337	1.01	1.01	1.01	0.0 0.00%
getThreshType() : jalview.binding.types.ColourThreshTypeType   getThreshType() : jalview.binding.types.ColourThreshTypeType	347347	1.01	1.01	1.01	0.0 0.00%
getThreshold() : float   getThreshold() : float	357357	1.01	1.01	1.01	0.0 0.00%
hasAutoScale() : boolean   hasAutoScale() : boolean	367367	1.01	1.01	1.01	0.0 0.00%
hasColourByLabel() : boolean   hasColourByLabel() : boolean	377377	1.01	1.01	1.01	0.0 0.00%
hasMax() : boolean   hasMax() : boolean	387387	1.01	1.01	1.01	0.0 0.00%
hasMin() : boolean   hasMin() : boolean	397397	1.01	1.01	1.01	0.0 0.00%
hasThreshold() : boolean   hasThreshold() : boolean	407407	1.01	1.01	1.01	0.0 0.00%
isAutoScale() : boolean   isAutoScale() : boolean	417417	1.01	1.01	1.01	0.0 0.00%
isColourByLabel() : boolean   isColourByLabel() : boolean	427427	1.01	1.01	1.01	0.0 0.00%
isValid() : boolean   isValid() : boolean	437437	4.04	2.02	4.04	0.0 0.00%
marshal(java.io.Writer) : void   marshal(java.io.Writer) : void	459459	1.01	1.01	1.01	0.0 0.00%
marshal(org.xml.sax.ContentHandler) : void   marshal(org.xml.sax.ContentHandler) : void	478478	1.01	1.01	1.01	0.0 0.00%
removeAllAttributeName() : void   removeAllAttributeName() : void	488488	1.01	1.01	1.01	0.0 0.00%
removeAttributeName(java.lang.String) : boolean   removeAttributeName(java.lang.String) : boolean	499499	2.02	1.01	2.02	0.0 0.00%
removeAttributeNameAt(int) : java.lang.String   removeAttributeNameAt(int) : java.lang.String	511511	2.02	1.01	2.02	0.0 0.00%
setAttributeName(int,java.lang.String) : void   setAttributeName(int,java.lang.String) : void	525525	3.03	3.03	5.05	0.0 0.00%
setAttributeName(java.lang.String[]) : void   setAttributeName(java.lang.String[]) : void	545545	3.03	2.02	5.05	0.0 0.00%
setAutoScale(boolean) : void   setAutoScale(boolean) : void	562562	2.02	1.01	2.02	0.0 0.00%
setColourByLabel(boolean) : void   setColourByLabel(boolean) : void	574574	2.02	1.01	2.02	0.0 0.00%
setMax(float) : void   setMax(float) : void	586586	2.02	1.01	2.02	0.0 0.00%
setMin(float) : void   setMin(float) : void	598598	2.02	1.01	2.02	0.0 0.00%
setMinRGB(java.lang.String) : void   setMinRGB(java.lang.String) : void	610610	1.01	1.01	1.01	0.0 0.00%
setName(java.lang.String) : void   setName(java.lang.String) : void	623623	1.01	1.01	1.01	0.0 0.00%
setNoValueColour(jalview.binding.types.NoValueColour) : void   setNoValueColour(jalview.binding.types.NoValueColour) : void	634634	1.01	1.01	1.01	0.0 0.00%
setRGB(java.lang.String) : void   setRGB(java.lang.String) : void	646646	1.01	1.01	1.01	0.0 0.00%
setThreshType(jalview.binding.types.ColourThreshTypeType) : void   setThreshType(jalview.binding.types.ColourThreshTypeType) : void	657657	1.01	1.01	1.01	0.0 0.00%
setThreshold(float) : void   setThreshold(float) : void	669669	2.02	1.01	2.02	0.0 0.00%
unmarshal(java.io.Reader) : jalview.binding.Colour   unmarshal(java.io.Reader) : jalview.binding.Colour	686686	1.01	1.01	1.01	0.0 0.00%
validate() : void   validate() : void	701701	2.02	1.01	2.02	0.0 0.00%

 

Contributing tests

Source view

1		/*
2		* This class was automatically generated with
3		* <a href="http://www.castor.org">Castor 1.1</a>, using an XML
4		* Schema.
5		* $Id$
6		*/
7
8		package jalview.binding;
9
10		//---------------------------------/
11		//- Imported classes and packages -/
12		//---------------------------------/
13
14		import org.exolab.castor.xml.Marshaller;
15		import org.exolab.castor.xml.Unmarshaller;
16
17		/**
18		* Class Colour.
19		*
20		* @version $Revision$ $Date$
21		*/
		0% Uncovered Elements: 132 (132) Complexity: 57 Complexity Density: 0.78
22		public class Colour implements java.io.Serializable
23		{
24
25		// --------------------------/
26		// - Class/Member Variables -/
27		// --------------------------/
28
29		/**
30		* Single letter residue code for an alignment colour scheme, or feature type
31		* for a feature colour scheme
32		*/
33		private java.lang.String _name;
34
35		/**
36		* Field _RGB.
37		*/
38		private java.lang.String _RGB;
39
40		/**
41		* Field _minRGB.
42		*/
43		private java.lang.String _minRGB;
44
45		/**
46		* Field _noValueColour.
47		*/
48		private jalview.binding.types.NoValueColour _noValueColour = jalview.binding.types.NoValueColour
49		.valueOf("Min");
50
51		/**
52		* Field _threshType.
53		*/
54		private jalview.binding.types.ColourThreshTypeType _threshType;
55
56		/**
57		* Field _threshold.
58		*/
59		private float _threshold;
60
61		/**
62		* keeps track of state for field: _threshold
63		*/
64		private boolean _has_threshold;
65
66		/**
67		* Field _max.
68		*/
69		private float _max;
70
71		/**
72		* keeps track of state for field: _max
73		*/
74		private boolean _has_max;
75
76		/**
77		* Field _min.
78		*/
79		private float _min;
80
81		/**
82		* keeps track of state for field: _min
83		*/
84		private boolean _has_min;
85
86		/**
87		* Field _colourByLabel.
88		*/
89		private boolean _colourByLabel;
90
91		/**
92		* keeps track of state for field: _colourByLabel
93		*/
94		private boolean _has_colourByLabel;
95
96		/**
97		* Field _autoScale.
98		*/
99		private boolean _autoScale;
100
101		/**
102		* keeps track of state for field: _autoScale
103		*/
104		private boolean _has_autoScale;
105
106		/**
107		* name of feature attribute to colour by, or attribute and sub-attribute
108		*/
109		private java.util.Vector _attributeNameList;
110
111		// ----------------/
112		// - Constructors -/
113		// ----------------/
114
		0% Uncovered Elements: 3 (3) Complexity: 1 Complexity Density: 0.33
115	0	public Colour()...
116		{
117	0	super();
118	0	setNoValueColour(jalview.binding.types.NoValueColour.valueOf("Min"));
119	0	this._attributeNameList = new java.util.Vector();
120		}
121
122		// -----------/
123		// - Methods -/
124		// -----------/
125
126		/**
127		*
128		*
129		* @param vAttributeName
130		* @throws java.lang.IndexOutOfBoundsException
131		* if the index given is outside the bounds of the collection
132		*/
		0% Uncovered Elements: 5 (5) Complexity: 2 Complexity Density: 0.67
133	0	public void addAttributeName(final java.lang.String vAttributeName)...
134		throws java.lang.IndexOutOfBoundsException
135		{
136		// check for the maximum size
137	0	if (this._attributeNameList.size() >= 2)
138		{
139	0	throw new IndexOutOfBoundsException(
140		"addAttributeName has a maximum of 2");
141		}
142
143	0	this._attributeNameList.addElement(vAttributeName);
144		}
145
146		/**
147		*
148		*
149		* @param index
150		* @param vAttributeName
151		* @throws java.lang.IndexOutOfBoundsException
152		* if the index given is outside the bounds of the collection
153		*/
		0% Uncovered Elements: 5 (5) Complexity: 2 Complexity Density: 0.67
154	0	public void addAttributeName(final int index,...
155		final java.lang.String vAttributeName)
156		throws java.lang.IndexOutOfBoundsException
157		{
158		// check for the maximum size
159	0	if (this._attributeNameList.size() >= 2)
160		{
161	0	throw new IndexOutOfBoundsException(
162		"addAttributeName has a maximum of 2");
163		}
164
165	0	this._attributeNameList.add(index, vAttributeName);
166		}
167
168		/**
169		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
170	0	public void deleteAutoScale()...
171		{
172	0	this._has_autoScale = false;
173		}
174
175		/**
176		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
177	0	public void deleteColourByLabel()...
178		{
179	0	this._has_colourByLabel = false;
180		}
181
182		/**
183		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
184	0	public void deleteMax()...
185		{
186	0	this._has_max = false;
187		}
188
189		/**
190		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
191	0	public void deleteMin()...
192		{
193	0	this._has_min = false;
194		}
195
196		/**
197		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
198	0	public void deleteThreshold()...
199		{
200	0	this._has_threshold = false;
201		}
202
203		/**
204		* Method enumerateAttributeName.
205		*
206		* @return an Enumeration over all java.lang.String elements
207		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
208	0	public java.util.Enumeration enumerateAttributeName()...
209		{
210	0	return this._attributeNameList.elements();
211		}
212
213		/**
214		* Method getAttributeName.
215		*
216		* @param index
217		* @throws java.lang.IndexOutOfBoundsException
218		* if the index given is outside the bounds of the collection
219		* @return the value of the java.lang.String at the given index
220		*/
		0% Uncovered Elements: 5 (5) Complexity: 3 Complexity Density: 1
221	0	public java.lang.String getAttributeName(final int index)...
222		throws java.lang.IndexOutOfBoundsException
223		{
224		// check bounds for index
225	0	if (index < 0 || index >= this._attributeNameList.size())
226		{
227	0	throw new IndexOutOfBoundsException("getAttributeName: Index value '"
228		+ index + "' not in range [0.."
229		+ (this._attributeNameList.size() - 1) + "]");
230		}
231
232	0	return (java.lang.String) _attributeNameList.get(index);
233		}
234
235		/**
236		* Method getAttributeName.Returns the contents of the collection in an Array.
237		* <p>
238		* Note: Just in case the collection contents are changing in another thread,
239		* we pass a 0-length Array of the correct type into the API call. This way we
240		* <i>know</i> that the Array returned is of exactly the correct length.
241		*
242		* @return this collection as an Array
243		*/
		0% Uncovered Elements: 2 (2) Complexity: 1 Complexity Density: 0.5
244	0	public java.lang.String[] getAttributeName()...
245		{
246	0	java.lang.String[] array = new java.lang.String[0];
247	0	return (java.lang.String[]) this._attributeNameList.toArray(array);
248		}
249
250		/**
251		* Method getAttributeNameCount.
252		*
253		* @return the size of this collection
254		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
255	0	public int getAttributeNameCount()...
256		{
257	0	return this._attributeNameList.size();
258		}
259
260		/**
261		* Returns the value of field 'autoScale'.
262		*
263		* @return the value of field 'AutoScale'.
264		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
265	0	public boolean getAutoScale()...
266		{
267	0	return this._autoScale;
268		}
269
270		/**
271		* Returns the value of field 'colourByLabel'.
272		*
273		* @return the value of field 'ColourByLabel'.
274		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
275	0	public boolean getColourByLabel()...
276		{
277	0	return this._colourByLabel;
278		}
279
280		/**
281		* Returns the value of field 'max'.
282		*
283		* @return the value of field 'Max'.
284		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
285	0	public float getMax()...
286		{
287	0	return this._max;
288		}
289
290		/**
291		* Returns the value of field 'min'.
292		*
293		* @return the value of field 'Min'.
294		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
295	0	public float getMin()...
296		{
297	0	return this._min;
298		}
299
300		/**
301		* Returns the value of field 'minRGB'.
302		*
303		* @return the value of field 'MinRGB'.
304		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
305	0	public java.lang.String getMinRGB()...
306		{
307	0	return this._minRGB;
308		}
309
310		/**
311		* Returns the value of field 'name'. The field 'name' has the following
312		* description: Single letter residue code for an alignment colour scheme, or
313		* feature type for a feature colour scheme
314		*
315		* @return the value of field 'Name'.
316		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
317	0	public java.lang.String getName()...
318		{
319	0	return this._name;
320		}
321
322		/**
323		* Returns the value of field 'noValueColour'.
324		*
325		* @return the value of field 'NoValueColour'.
326		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
327	0	public jalview.binding.types.NoValueColour getNoValueColour()...
328		{
329	0	return this._noValueColour;
330		}
331
332		/**
333		* Returns the value of field 'RGB'.
334		*
335		* @return the value of field 'RGB'.
336		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
337	0	public java.lang.String getRGB()...
338		{
339	0	return this._RGB;
340		}
341
342		/**
343		* Returns the value of field 'threshType'.
344		*
345		* @return the value of field 'ThreshType'.
346		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
347	0	public jalview.binding.types.ColourThreshTypeType getThreshType()...
348		{
349	0	return this._threshType;
350		}
351
352		/**
353		* Returns the value of field 'threshold'.
354		*
355		* @return the value of field 'Threshold'.
356		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
357	0	public float getThreshold()...
358		{
359	0	return this._threshold;
360		}
361
362		/**
363		* Method hasAutoScale.
364		*
365		* @return true if at least one AutoScale has been added
366		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
367	0	public boolean hasAutoScale()...
368		{
369	0	return this._has_autoScale;
370		}
371
372		/**
373		* Method hasColourByLabel.
374		*
375		* @return true if at least one ColourByLabel has been added
376		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
377	0	public boolean hasColourByLabel()...
378		{
379	0	return this._has_colourByLabel;
380		}
381
382		/**
383		* Method hasMax.
384		*
385		* @return true if at least one Max has been added
386		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
387	0	public boolean hasMax()...
388		{
389	0	return this._has_max;
390		}
391
392		/**
393		* Method hasMin.
394		*
395		* @return true if at least one Min has been added
396		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
397	0	public boolean hasMin()...
398		{
399	0	return this._has_min;
400		}
401
402		/**
403		* Method hasThreshold.
404		*
405		* @return true if at least one Threshold has been added
406		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
407	0	public boolean hasThreshold()...
408		{
409	0	return this._has_threshold;
410		}
411
412		/**
413		* Returns the value of field 'autoScale'.
414		*
415		* @return the value of field 'AutoScale'.
416		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
417	0	public boolean isAutoScale()...
418		{
419	0	return this._autoScale;
420		}
421
422		/**
423		* Returns the value of field 'colourByLabel'.
424		*
425		* @return the value of field 'ColourByLabel'.
426		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
427	0	public boolean isColourByLabel()...
428		{
429	0	return this._colourByLabel;
430		}
431
432		/**
433		* Method isValid.
434		*
435		* @return true if this object is valid according to the schema
436		*/
		0% Uncovered Elements: 4 (4) Complexity: 2 Complexity Density: 0.5
437	0	public boolean isValid()...
438		{
439	0	try
440		{
441	0	validate();
442		} catch (org.exolab.castor.xml.ValidationException vex)
443		{
444	0	return false;
445		}
446	0	return true;
447		}
448
449		/**
450		*
451		*
452		* @param out
453		* @throws org.exolab.castor.xml.MarshalException
454		* if object is null or if any SAXException is thrown during
455		* marshaling
456		* @throws org.exolab.castor.xml.ValidationException
457		* if this object is an invalid instance according to the schema
458		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
459	0	public void marshal(final java.io.Writer out)...
460		throws org.exolab.castor.xml.MarshalException,
461		org.exolab.castor.xml.ValidationException
462		{
463	0	Marshaller.marshal(this, out);
464		}
465
466		/**
467		*
468		*
469		* @param handler
470		* @throws java.io.IOException
471		* if an IOException occurs during marshaling
472		* @throws org.exolab.castor.xml.ValidationException
473		* if this object is an invalid instance according to the schema
474		* @throws org.exolab.castor.xml.MarshalException
475		* if object is null or if any SAXException is thrown during
476		* marshaling
477		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
478	0	public void marshal(final org.xml.sax.ContentHandler handler)...
479		throws java.io.IOException,
480		org.exolab.castor.xml.MarshalException,
481		org.exolab.castor.xml.ValidationException
482		{
483	0	Marshaller.marshal(this, handler);
484		}
485
486		/**
487		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
488	0	public void removeAllAttributeName()...
489		{
490	0	this._attributeNameList.clear();
491		}
492
493		/**
494		* Method removeAttributeName.
495		*
496		* @param vAttributeName
497		* @return true if the object was removed from the collection.
498		*/
		0% Uncovered Elements: 2 (2) Complexity: 1 Complexity Density: 0.5
499	0	public boolean removeAttributeName(final java.lang.String vAttributeName)...
500		{
501	0	boolean removed = _attributeNameList.remove(vAttributeName);
502	0	return removed;
503		}
504
505		/**
506		* Method removeAttributeNameAt.
507		*
508		* @param index
509		* @return the element removed from the collection
510		*/
		0% Uncovered Elements: 2 (2) Complexity: 1 Complexity Density: 0.5
511	0	public java.lang.String removeAttributeNameAt(final int index)...
512		{
513	0	java.lang.Object obj = this._attributeNameList.remove(index);
514	0	return (java.lang.String) obj;
515		}
516
517		/**
518		*
519		*
520		* @param index
521		* @param vAttributeName
522		* @throws java.lang.IndexOutOfBoundsException
523		* if the index given is outside the bounds of the collection
524		*/
		0% Uncovered Elements: 5 (5) Complexity: 3 Complexity Density: 1
525	0	public void setAttributeName(final int index,...
526		final java.lang.String vAttributeName)
527		throws java.lang.IndexOutOfBoundsException
528		{
529		// check bounds for index
530	0	if (index < 0 || index >= this._attributeNameList.size())
531		{
532	0	throw new IndexOutOfBoundsException("setAttributeName: Index value '"
533		+ index + "' not in range [0.."
534		+ (this._attributeNameList.size() - 1) + "]");
535		}
536
537	0	this._attributeNameList.set(index, vAttributeName);
538		}
539
540		/**
541		*
542		*
543		* @param vAttributeNameArray
544		*/
		0% Uncovered Elements: 5 (5) Complexity: 2 Complexity Density: 0.67
545	0	public void setAttributeName(final java.lang.String[] vAttributeNameArray)...
546		{
547		// -- copy array
548	0	_attributeNameList.clear();
549
550	0	for (int i = 0; i < vAttributeNameArray.length; i++)
551		{
552	0	this._attributeNameList.add(vAttributeNameArray[i]);
553		}
554		}
555
556		/**
557		* Sets the value of field 'autoScale'.
558		*
559		* @param autoScale
560		* the value of field 'autoScale'.
561		*/
		0% Uncovered Elements: 2 (2) Complexity: 1 Complexity Density: 0.5
562	0	public void setAutoScale(final boolean autoScale)...
563		{
564	0	this._autoScale = autoScale;
565	0	this._has_autoScale = true;
566		}
567
568		/**
569		* Sets the value of field 'colourByLabel'.
570		*
571		* @param colourByLabel
572		* the value of field 'colourByLabel'.
573		*/
		0% Uncovered Elements: 2 (2) Complexity: 1 Complexity Density: 0.5
574	0	public void setColourByLabel(final boolean colourByLabel)...
575		{
576	0	this._colourByLabel = colourByLabel;
577	0	this._has_colourByLabel = true;
578		}
579
580		/**
581		* Sets the value of field 'max'.
582		*
583		* @param max
584		* the value of field 'max'.
585		*/
		0% Uncovered Elements: 2 (2) Complexity: 1 Complexity Density: 0.5
586	0	public void setMax(final float max)...
587		{
588	0	this._max = max;
589	0	this._has_max = true;
590		}
591
592		/**
593		* Sets the value of field 'min'.
594		*
595		* @param min
596		* the value of field 'min'.
597		*/
		0% Uncovered Elements: 2 (2) Complexity: 1 Complexity Density: 0.5
598	0	public void setMin(final float min)...
599		{
600	0	this._min = min;
601	0	this._has_min = true;
602		}
603
604		/**
605		* Sets the value of field 'minRGB'.
606		*
607		* @param minRGB
608		* the value of field 'minRGB'.
609		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
610	0	public void setMinRGB(final java.lang.String minRGB)...
611		{
612	0	this._minRGB = minRGB;
613		}
614
615		/**
616		* Sets the value of field 'name'. The field 'name' has the following
617		* description: Single letter residue code for an alignment colour scheme, or
618		* feature type for a feature colour scheme
619		*
620		* @param name
621		* the value of field 'name'.
622		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
623	0	public void setName(final java.lang.String name)...
624		{
625	0	this._name = name;
626		}
627
628		/**
629		* Sets the value of field 'noValueColour'.
630		*
631		* @param noValueColour
632		* the value of field 'noValueColour'.
633		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
634	0	public void setNoValueColour(...
635		final jalview.binding.types.NoValueColour noValueColour)
636		{
637	0	this._noValueColour = noValueColour;
638		}
639
640		/**
641		* Sets the value of field 'RGB'.
642		*
643		* @param RGB
644		* the value of field 'RGB'.
645		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
646	0	public void setRGB(final java.lang.String RGB)...
647		{
648	0	this._RGB = RGB;
649		}
650
651		/**
652		* Sets the value of field 'threshType'.
653		*
654		* @param threshType
655		* the value of field 'threshType'.
656		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
657	0	public void setThreshType(...
658		final jalview.binding.types.ColourThreshTypeType threshType)
659		{
660	0	this._threshType = threshType;
661		}
662
663		/**
664		* Sets the value of field 'threshold'.
665		*
666		* @param threshold
667		* the value of field 'threshold'.
668		*/
		0% Uncovered Elements: 2 (2) Complexity: 1 Complexity Density: 0.5
669	0	public void setThreshold(final float threshold)...
670		{
671	0	this._threshold = threshold;
672	0	this._has_threshold = true;
673		}
674
675		/**
676		* Method unmarshal.
677		*
678		* @param reader
679		* @throws org.exolab.castor.xml.MarshalException
680		* if object is null or if any SAXException is thrown during
681		* marshaling
682		* @throws org.exolab.castor.xml.ValidationException
683		* if this object is an invalid instance according to the schema
684		* @return the unmarshaled jalview.binding.Colour
685		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
686	0	public static jalview.binding.Colour unmarshal(...
687		final java.io.Reader reader)
688		throws org.exolab.castor.xml.MarshalException,
689		org.exolab.castor.xml.ValidationException
690		{
691	0	return (jalview.binding.Colour) Unmarshaller
692		.unmarshal(jalview.binding.Colour.class, reader);
693		}
694
695		/**
696		*
697		*
698		* @throws org.exolab.castor.xml.ValidationException
699		* if this object is an invalid instance according to the schema
700		*/
		0% Uncovered Elements: 2 (2) Complexity: 1 Complexity Density: 0.5
701	0	public void validate() throws org.exolab.castor.xml.ValidationException...
702		{
703	0	org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
704	0	validator.validate(this);
705		}
706
707		}